Wall clock time and date at job start Wed Apr 15 2020 11:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38301 * 119.93468 * 2 1 4 4 C 1.38088 * 120.07695 * 179.70191 * 3 2 1 5 5 C 1.38899 * 119.92558 * 0.53567 * 4 3 2 6 6 N 1.39922 * 120.06812 * 179.74505 * 5 4 3 7 7 C 1.46507 * 119.99662 * 246.49178 * 6 5 4 8 8 C 1.50703 * 109.46821 * 90.00368 * 7 6 5 9 9 H 1.08001 * 120.00167 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99942 * 179.72618 * 8 7 6 11 11 N 1.31516 * 119.99730 * 0.27344 * 10 8 7 12 12 Si 1.86798 * 120.00051 * 180.27511 * 10 8 7 13 13 H 1.48499 * 109.47151 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47171 * 119.99681 * 12 10 8 15 15 H 1.48504 * 109.47181 * 239.99923 * 12 10 8 16 16 C 1.34772 * 120.00513 * 66.49560 * 6 5 4 17 17 O 1.21282 * 120.00352 * 184.43208 * 16 6 5 18 18 C 1.50701 * 119.99613 * 4.42960 * 16 6 5 19 19 Cl 1.80300 * 109.46937 * 174.70558 * 18 16 6 20 20 C 1.38853 * 119.85623 * 359.46580 * 5 4 3 21 21 C 1.38136 * 119.92945 * 0.27803 * 20 5 4 22 22 C 1.50704 * 119.96117 * 179.97438 * 21 20 5 23 23 H 1.08997 * 109.46872 * 270.02179 * 1 2 3 24 24 H 1.08999 * 109.47170 * 30.01605 * 1 2 3 25 25 H 1.09002 * 109.47003 * 150.02029 * 1 2 3 26 26 H 1.08008 * 119.95959 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.03729 * 180.29709 * 4 3 2 28 28 H 1.09003 * 109.47179 * 330.00662 * 7 6 5 29 29 H 1.08998 * 109.47272 * 210.00157 * 7 6 5 30 30 H 0.96998 * 119.99490 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.47467 * 294.70428 * 18 16 6 32 32 H 1.09003 * 109.47283 * 54.71212 * 18 16 6 33 33 H 1.07999 * 120.03219 * 180.30061 * 20 5 4 34 34 H 1.09001 * 109.46554 * 90.00088 * 22 21 20 35 35 H 1.09000 * 109.47039 * 210.00136 * 22 21 20 36 36 H 1.08997 * 109.46904 * 330.00358 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5780 1.2019 0.0062 5 6 4.2739 -0.0001 0.0012 6 7 5.6732 -0.0001 0.0021 7 6 6.4064 -0.5009 -1.1632 8 6 6.6581 0.6329 -2.1235 9 1 6.3068 1.6270 -1.8895 10 6 7.3416 0.4022 -3.2986 11 7 7.7690 -0.8084 -3.5838 12 14 7.6604 1.8091 -4.4854 13 1 7.0809 3.0611 -3.9359 14 1 9.1240 1.9795 -4.6693 15 1 7.0290 1.5050 -5.7947 16 6 6.3464 0.4606 1.0749 17 8 7.5566 0.5358 1.0450 18 6 5.5955 0.8822 2.3116 19 17 6.7698 1.2989 3.6148 20 6 3.5781 -1.2017 0.0012 21 6 2.1968 -1.1982 0.0004 22 6 1.4409 -2.5020 -0.0002 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6554 2.1329 -0.0004 27 1 4.1163 2.1383 0.0111 28 1 5.8175 -1.2728 -1.6588 29 1 7.3586 -0.9216 -0.8401 30 1 8.2495 -0.9707 -4.4107 31 1 4.9810 1.7533 2.0843 32 1 4.9572 0.0643 2.6457 33 1 4.1164 -2.1380 0.0022 34 1 1.2580 -2.8163 1.0273 35 1 0.4890 -2.3698 -0.5147 36 1 2.0289 -3.2626 -0.5137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003068449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:07 Heat of formation + Delta-G solvation = -23.933533 kcal Electronic energy + Delta-G solvation = -19784.120910 eV Core-core repulsion = 16679.884751 eV Total energy + Delta-G solvation = -3104.236159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.11847 -38.56156 -35.83939 -35.32340 -33.03744 -32.28557 -31.33577 -29.53505 -27.51115 -26.79097 -25.64863 -22.90419 -21.88693 -21.29254 -18.72912 -16.97330 -16.66595 -15.82249 -15.64704 -15.31386 -14.81889 -14.38862 -14.21979 -14.09488 -13.24740 -13.12123 -13.04899 -12.90955 -12.79684 -12.47658 -12.14207 -11.93238 -11.67483 -11.42224 -11.15800 -10.98425 -10.83783 -10.68604 -10.55152 -10.31152 -10.20906 -9.76084 -9.37167 -8.64034 -8.48626 -8.47461 -7.69903 -6.09746 -4.14071 1.42846 1.54187 2.22976 3.08452 3.28035 3.35504 3.39548 3.68872 3.84521 4.41248 4.71273 4.87603 4.94471 5.11620 5.13465 5.21867 5.23948 5.25968 5.44057 5.49465 5.60378 5.65688 5.82351 5.85524 5.87547 6.13616 6.24538 6.49581 6.69579 6.75588 6.89400 7.13090 7.27043 7.38015 7.85407 8.13033 8.18753 8.71604 8.90313 9.50520 10.98819 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.007226 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.108681 B = 3873.745459 C = 5610.359490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.104 4.104 4 C -0.130 4.130 5 C 0.156 3.844 6 N -0.557 5.557 7 C 0.249 3.751 8 C -0.525 4.525 9 H 0.059 0.941 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.899 3.101 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.502 3.498 17 O -0.501 6.501 18 C -0.057 4.057 19 Cl -0.148 7.148 20 C -0.119 4.119 21 C -0.076 4.076 22 C -0.115 4.115 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.328 0.041 9.698 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.122 4.122 4 C -0.149 4.149 5 C 0.064 3.936 6 N -0.286 5.286 7 C 0.132 3.868 8 C -0.564 4.564 9 H 0.077 0.923 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.727 3.273 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.209 1.209 16 C 0.287 3.713 17 O -0.375 6.375 18 C -0.123 4.123 19 Cl -0.121 7.121 20 C -0.139 4.139 21 C -0.076 4.076 22 C -0.172 4.172 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.406 -0.006 9.625 17.325 hybrid contribution 0.273 0.816 -0.865 1.220 sum -14.133 0.810 8.760 16.647 Atomic orbital electron populations 1.20806 0.91533 1.02646 1.01935 1.19682 0.95754 0.92608 1.02112 1.20822 0.93417 0.97395 1.00588 1.21332 0.94279 0.97565 1.01766 1.17720 0.83755 0.92974 0.99140 1.45929 1.03195 1.61929 1.17518 1.19478 0.92143 0.95014 0.80150 1.21381 1.36396 0.95268 1.03336 0.92293 1.24909 0.95230 0.95923 0.97905 1.69933 1.38189 1.20096 1.25081 0.86419 0.78131 0.82231 0.80541 1.19755 1.20767 1.20917 1.20101 0.88300 0.78924 0.83943 1.90767 1.13291 1.51421 1.82022 1.24341 0.93783 1.04891 0.89296 1.98709 1.65266 1.94739 1.53425 1.21156 0.93422 0.97741 1.01603 1.19563 0.92996 0.94899 1.00187 1.20845 1.00009 0.94220 1.02107 0.91509 0.91845 0.91341 0.85988 0.85839 0.94489 0.93405 0.92672 0.86546 0.86828 0.85640 0.91321 0.91231 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.60 36.01 0.35 -0.64 16 2 C -0.10 -1.22 5.88 -104.59 -0.62 -1.84 16 3 C -0.10 -1.32 9.69 -39.61 -0.38 -1.70 16 4 C -0.13 -2.00 8.43 -39.39 -0.33 -2.33 16 5 C 0.16 2.73 4.44 -83.69 -0.37 2.36 16 6 N -0.56 -11.72 2.51 -114.73 -0.29 -12.01 16 7 C 0.25 6.45 5.07 -5.19 -0.03 6.43 16 8 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 12 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.50 10.32 7.58 -10.99 -0.08 10.24 16 17 O -0.50 -12.49 15.65 5.56 0.09 -12.40 16 18 C -0.06 -0.86 5.80 36.01 0.21 -0.65 16 19 Cl -0.15 -2.35 28.38 -51.86 -1.47 -3.82 16 20 C -0.12 -1.86 9.30 -39.39 -0.37 -2.22 16 21 C -0.08 -0.98 5.88 -104.65 -0.62 -1.59 16 22 C -0.12 -1.14 9.60 36.01 0.35 -0.79 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.07 0.54 5.94 -51.93 -0.31 0.24 16 26 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 27 H 0.12 1.89 7.89 -52.49 -0.41 1.48 16 28 H 0.04 0.98 7.83 -51.93 -0.41 0.57 16 29 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.12 1.52 6.96 -51.93 -0.36 1.16 16 32 H 0.11 1.45 8.02 -51.93 -0.42 1.03 16 33 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 36 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -32.35 321.53 -8.10 -40.46 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.68 Total: -2.09 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.31 Total: -6.24 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.45 Total: -37.72 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -1.47 Total: -3.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.35 -8.10 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003068449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.524 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds