Wall clock time and date at job start Wed Apr 15 2020 11:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38301 * 119.93468 * 2 1 4 4 C 1.38088 * 120.07695 * 179.70191 * 3 2 1 5 5 C 1.38899 * 119.92558 * 0.53567 * 4 3 2 6 6 N 1.39922 * 120.06812 * 179.74505 * 5 4 3 7 7 C 1.46507 * 119.99662 * 246.49178 * 6 5 4 8 8 C 1.50703 * 109.46821 * 90.00368 * 7 6 5 9 9 H 1.08001 * 120.00167 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99942 * 179.72618 * 8 7 6 11 11 N 1.31516 * 119.99730 * 0.27344 * 10 8 7 12 12 Si 1.86798 * 120.00051 * 180.27511 * 10 8 7 13 13 H 1.48499 * 109.47151 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47171 * 119.99681 * 12 10 8 15 15 H 1.48504 * 109.47181 * 239.99923 * 12 10 8 16 16 C 1.34772 * 120.00513 * 66.49560 * 6 5 4 17 17 O 1.21282 * 120.00352 * 184.43208 * 16 6 5 18 18 C 1.50701 * 119.99613 * 4.42960 * 16 6 5 19 19 Cl 1.80300 * 109.46937 * 174.70558 * 18 16 6 20 20 C 1.38853 * 119.85623 * 359.46580 * 5 4 3 21 21 C 1.38136 * 119.92945 * 0.27803 * 20 5 4 22 22 C 1.50704 * 119.96117 * 179.97438 * 21 20 5 23 23 H 1.08997 * 109.46872 * 270.02179 * 1 2 3 24 24 H 1.08999 * 109.47170 * 30.01605 * 1 2 3 25 25 H 1.09002 * 109.47003 * 150.02029 * 1 2 3 26 26 H 1.08008 * 119.95959 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.03729 * 180.29709 * 4 3 2 28 28 H 1.09003 * 109.47179 * 330.00662 * 7 6 5 29 29 H 1.08998 * 109.47272 * 210.00157 * 7 6 5 30 30 H 0.96998 * 119.99490 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.47467 * 294.70428 * 18 16 6 32 32 H 1.09003 * 109.47283 * 54.71212 * 18 16 6 33 33 H 1.07999 * 120.03219 * 180.30061 * 20 5 4 34 34 H 1.09001 * 109.46554 * 90.00088 * 22 21 20 35 35 H 1.09000 * 109.47039 * 210.00136 * 22 21 20 36 36 H 1.08997 * 109.46904 * 330.00358 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5780 1.2019 0.0062 5 6 4.2739 -0.0001 0.0012 6 7 5.6732 -0.0001 0.0021 7 6 6.4064 -0.5009 -1.1632 8 6 6.6581 0.6329 -2.1235 9 1 6.3068 1.6270 -1.8895 10 6 7.3416 0.4022 -3.2986 11 7 7.7690 -0.8084 -3.5838 12 14 7.6604 1.8091 -4.4854 13 1 7.0809 3.0611 -3.9359 14 1 9.1240 1.9795 -4.6693 15 1 7.0290 1.5050 -5.7947 16 6 6.3464 0.4606 1.0749 17 8 7.5566 0.5358 1.0450 18 6 5.5955 0.8822 2.3116 19 17 6.7698 1.2989 3.6148 20 6 3.5781 -1.2017 0.0012 21 6 2.1968 -1.1982 0.0004 22 6 1.4409 -2.5020 -0.0002 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6554 2.1329 -0.0004 27 1 4.1163 2.1383 0.0111 28 1 5.8175 -1.2728 -1.6588 29 1 7.3586 -0.9216 -0.8401 30 1 8.2495 -0.9707 -4.4107 31 1 4.9810 1.7533 2.0843 32 1 4.9572 0.0643 2.6457 33 1 4.1164 -2.1380 0.0022 34 1 1.2580 -2.8163 1.0273 35 1 0.4890 -2.3698 -0.5147 36 1 2.0289 -3.2626 -0.5137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003068449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:05 Heat of formation + Delta-G solvation = -42.231083 kcal Electronic energy + Delta-G solvation = -19784.914352 eV Core-core repulsion = 16679.884751 eV Total energy + Delta-G solvation = -3105.029600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.51217 -39.91799 -37.18698 -36.81632 -35.01767 -33.44783 -32.50841 -31.11023 -28.90514 -28.10801 -26.80386 -24.84643 -23.02023 -22.54304 -20.13574 -18.79178 -18.36414 -17.55240 -17.01862 -16.44932 -16.33913 -16.03574 -15.35980 -15.03778 -14.66512 -14.61831 -14.49151 -14.10372 -13.89287 -13.50194 -13.48352 -13.41209 -12.98936 -12.76254 -12.71418 -12.61936 -12.33848 -12.02060 -11.98018 -11.87269 -11.69672 -11.55914 -10.97695 -10.69623 -10.07184 -9.65560 -9.10070 -8.27544 -6.41936 0.28292 0.44886 0.94569 1.32959 1.35482 1.46261 1.52577 2.13898 2.36413 2.73186 3.02684 3.34168 3.89587 3.97865 4.02011 4.07026 4.12905 4.33515 4.42138 4.63183 4.81196 4.83823 4.88643 4.93332 5.01276 5.04893 5.10858 5.22921 5.31795 5.43683 5.50111 5.63154 5.71944 5.76883 5.96970 6.07016 6.55220 6.65761 7.12327 7.29725 8.80081 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.007226 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.108681 B = 3873.745459 C = 5610.359490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.098 4.098 4 C -0.138 4.138 5 C 0.119 3.881 6 N -0.557 5.557 7 C 0.267 3.733 8 C -0.540 4.540 9 H 0.052 0.948 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.967 3.033 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.269 1.269 16 C 0.493 3.507 17 O -0.559 6.559 18 C -0.039 4.039 19 Cl -0.152 7.152 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.115 4.115 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.154 0.846 27 H 0.119 0.881 28 H 0.023 0.977 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.736 1.174 9.889 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.284 5.284 7 C 0.147 3.853 8 C -0.579 4.579 9 H 0.071 0.929 10 C -0.189 4.189 11 N -0.567 5.567 12 Si 0.791 3.209 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.194 1.194 16 C 0.281 3.719 17 O -0.437 6.437 18 C -0.104 4.104 19 Cl -0.126 7.126 20 C -0.153 4.153 21 C -0.077 4.077 22 C -0.171 4.171 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.171 0.829 27 H 0.137 0.863 28 H 0.041 0.959 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.874 1.124 9.836 20.432 hybrid contribution 1.212 0.402 -0.907 1.566 sum -16.662 1.525 8.928 18.965 Atomic orbital electron populations 1.20907 0.88484 1.03890 1.03547 1.20162 0.97866 0.91760 0.99419 1.21171 0.92212 0.99170 0.99067 1.21354 0.95547 0.96386 1.02443 1.17942 0.81711 0.94701 1.02836 1.45714 1.04975 1.61436 1.16324 1.18869 0.90659 0.94184 0.81547 1.21626 1.36678 0.95418 1.04163 0.92928 1.25825 0.94802 0.98585 0.99718 1.70045 1.38717 1.22080 1.25814 0.85376 0.78023 0.78992 0.78519 1.19137 1.20487 1.19367 1.21026 0.87993 0.77725 0.85107 1.90729 1.15787 1.53968 1.83185 1.24307 0.92818 1.06878 0.86440 1.98712 1.65884 1.94765 1.53194 1.21194 0.94840 0.96654 1.02608 1.19920 0.91909 0.96964 0.98908 1.20923 1.00289 0.92346 1.03521 0.89520 0.90586 0.90220 0.82877 0.86318 0.95854 0.97634 0.92282 0.83909 0.83988 0.86862 0.89455 0.89168 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.60 71.24 0.68 -0.71 16 2 C -0.09 -1.88 5.88 -19.84 -0.12 -2.00 16 3 C -0.10 -2.18 9.69 22.25 0.22 -1.97 16 4 C -0.14 -4.08 8.43 22.39 0.19 -3.89 16 5 C 0.12 4.18 4.44 38.16 0.17 4.35 16 6 N -0.56 -24.54 2.51 -635.29 -1.60 -26.13 16 7 C 0.27 14.72 5.07 85.63 0.43 15.15 16 8 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 9 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 10 C 0.01 0.58 5.46 84.65 0.46 1.04 16 11 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 12 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 C 0.49 21.06 7.58 87.66 0.66 21.72 16 17 O -0.56 -29.39 15.65 -3.04 -0.05 -29.44 16 18 C -0.04 -1.16 5.80 71.24 0.41 -0.74 16 19 Cl -0.15 -4.77 28.38 -2.72 -0.08 -4.85 16 20 C -0.13 -4.15 9.30 22.39 0.21 -3.94 16 21 C -0.08 -1.81 5.88 -19.88 -0.12 -1.92 16 22 C -0.11 -1.93 9.60 71.24 0.68 -1.25 16 23 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.81 8.08 -2.39 -0.02 0.80 16 25 H 0.08 0.86 5.94 -2.39 -0.01 0.84 16 26 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 27 H 0.12 3.55 7.89 -2.91 -0.02 3.53 16 28 H 0.02 1.32 7.83 -2.39 -0.02 1.31 16 29 H 0.01 0.35 7.49 -2.39 -0.02 0.33 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.14 3.50 6.96 -2.39 -0.02 3.48 16 32 H 0.14 3.42 8.02 -2.39 -0.02 3.40 16 33 H 0.11 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.16 5.94 -2.39 -0.01 1.15 16 36 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 Total: -1.00 -74.08 321.53 5.80 -68.28 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.08 Total: 6.43 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.13 Total: -5.67 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.31 Total: -82.40 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -4.77 SS G_CDS: -0.08 Total: -4.85 kcal Total: -74.08 5.80 -68.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003068449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.052 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds