Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48497 * 109.47281 * 270.00182 * 3 2 1 5 5 H 1.48498 * 109.46876 * 30.00008 * 3 2 1 6 6 H 1.48500 * 109.46903 * 150.00074 * 3 2 1 7 7 C 1.38811 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99797 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.85032 * 336.19842 * 10 9 7 12 12 C 1.53782 * 113.68971 * 107.46371 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.19569 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 N 1.46494 * 109.47391 * 87.55384 * 15 13 12 17 17 C 1.34772 * 120.00463 * 180.02562 * 16 15 13 18 18 O 1.21578 * 120.00107 * 359.97438 * 17 16 15 19 19 C 1.47693 * 120.00381 * 180.02562 * 17 16 15 20 20 C 1.39485 * 122.10483 * 179.97438 * 19 17 16 21 21 C 1.34999 * 111.68298 * 179.97438 * 20 19 17 22 22 S 1.71757 * 105.45282 * 0.02562 * 21 20 19 23 23 N 1.30610 * 122.10277 * 359.70734 * 19 17 16 24 24 C 1.53781 * 113.61266 * 204.99945 * 10 9 7 25 25 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99515 * 359.97438 * 9 7 2 27 27 H 1.08997 * 113.61668 * 203.67120 * 12 10 9 28 28 H 1.08998 * 113.61674 * 334.49629 * 12 10 9 29 29 H 1.09002 * 109.47053 * 207.55709 * 15 13 12 30 30 H 1.09004 * 109.47121 * 327.55345 * 15 13 12 31 31 H 0.97000 * 119.99680 * 359.97438 * 16 15 13 32 32 H 1.07994 * 124.15988 * 359.96016 * 20 19 17 33 33 H 1.08002 * 127.27303 * 180.02562 * 21 20 19 34 34 H 1.09002 * 113.61445 * 25.35018 * 24 10 9 35 35 H 1.09002 * 113.61408 * 156.16749 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0657 -3.5637 -0.4059 12 6 2.0011 -4.4032 1.3428 13 6 0.7218 -5.0831 0.8219 14 1 -0.1898 -4.5302 1.0484 15 6 0.6239 -6.5665 1.1834 16 7 -0.0070 -6.7083 2.4979 17 6 -0.1982 -7.9338 3.0250 18 8 0.1524 -8.9218 2.4094 19 6 -0.8347 -8.0767 4.3501 20 6 -1.0542 -9.3231 4.9365 21 6 -1.6466 -9.2088 6.1441 22 16 -1.8566 -7.5224 6.3931 23 7 -1.2229 -7.0437 5.0487 24 6 1.2602 -4.8288 -0.5960 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 0.0002 27 1 2.8305 -5.0940 1.4940 28 1 1.8333 -3.7495 2.1987 29 1 0.0240 -7.0841 0.4347 30 1 1.6235 -7.0004 1.2114 31 1 -0.2864 -5.9200 2.9892 32 1 -0.7838 -10.2639 4.4804 33 1 -1.9289 -10.0088 6.8126 34 1 0.4929 -4.5188 -1.3054 35 1 1.8872 -5.6353 -0.9762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086397415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = 37.189064 kcal Electronic energy + Delta-G solvation = -18761.107652 eV Core-core repulsion = 15693.858426 eV Total energy + Delta-G solvation = -3067.249227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57359 -38.93624 -38.06534 -34.73617 -33.22552 -31.84489 -30.19391 -28.07201 -26.04127 -25.03858 -23.70560 -22.15764 -21.41849 -20.27062 -18.66077 -18.43758 -17.78106 -17.19280 -15.92130 -15.76897 -15.08155 -14.85462 -14.56331 -14.02150 -13.96650 -13.59344 -13.47383 -13.15760 -12.87520 -12.27086 -11.90939 -11.56065 -11.49680 -11.38673 -11.03817 -10.84858 -10.49305 -10.25017 -10.19816 -10.15788 -9.84009 -9.68780 -9.47831 -9.20728 -8.94553 -8.87445 -6.99872 -5.80455 -3.09552 0.29992 1.14630 1.51167 1.52871 3.11322 3.12595 3.42101 3.47362 3.49006 4.41651 4.55956 4.70395 4.99330 5.05499 5.08155 5.22491 5.25081 5.45662 5.48142 5.62907 5.69684 5.85648 5.94922 6.02837 6.10609 6.21880 6.37936 6.40012 6.59508 6.76252 6.90224 7.05316 7.47611 7.69166 8.08283 8.38723 9.49323 10.07027 10.41200 11.42011 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.003170 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.968492 B = 8830.993912 C = 9723.040074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.130 3.870 16 N -0.703 5.703 17 C 0.587 3.413 18 O -0.536 6.536 19 C 0.050 3.950 20 C -0.134 4.134 21 C -0.287 4.287 22 S 0.471 5.529 23 N -0.517 5.517 24 C -0.147 4.147 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.411 0.589 32 H 0.172 0.828 33 H 0.187 0.813 34 H 0.068 0.932 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 -18.758 12.429 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.139 4.139 14 H 0.112 0.888 15 C 0.007 3.993 16 N -0.353 5.353 17 C 0.368 3.632 18 O -0.413 6.413 19 C -0.125 4.125 20 C -0.167 4.167 21 C -0.436 4.436 22 S 0.626 5.374 23 N -0.352 5.352 24 C -0.187 4.187 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.247 0.753 32 H 0.189 0.811 33 H 0.204 0.796 34 H 0.087 0.913 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.053 -17.365 12.791 21.945 hybrid contribution 0.455 -0.396 -0.608 0.857 sum -3.597 -17.761 12.183 21.836 Atomic orbital electron populations 1.69660 1.05140 1.25783 1.57474 1.24766 0.95541 0.97793 1.02792 0.86167 0.78663 0.83682 0.77545 1.21659 1.21763 1.20698 1.19294 0.91122 0.83974 1.42945 0.90989 1.42176 1.05701 0.99448 1.87124 1.21046 0.95098 0.85584 0.92737 0.91928 1.23930 0.95599 0.99630 1.01819 1.22749 0.99724 0.92754 0.98692 0.88815 1.21576 0.97714 0.97325 0.82696 1.45938 1.60532 1.07991 1.20889 1.17245 0.78730 0.83934 0.83285 1.90795 1.51599 1.37840 1.61028 1.21252 1.04649 0.88495 0.98136 1.21417 1.01049 0.99412 0.94830 1.27227 1.07595 1.06594 1.02172 1.80588 1.47141 0.93940 1.15780 1.72290 1.19279 1.33745 1.09868 1.23444 1.00501 0.99701 0.95023 0.93439 0.78099 0.91396 0.91476 0.91457 0.91223 0.75300 0.81071 0.79603 0.91282 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.71 -17.56 5.31 -52.64 -0.28 -17.84 16 10 C 0.17 3.30 4.56 -67.12 -0.31 3.00 16 11 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 12 C -0.17 -2.88 7.44 -25.82 -0.19 -3.08 16 13 C -0.12 -1.86 3.65 -89.71 -0.33 -2.19 16 14 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.13 1.81 5.51 -4.05 -0.02 1.79 16 16 N -0.70 -9.77 5.55 -61.30 -0.34 -10.11 16 17 C 0.59 8.51 7.81 -12.40 -0.10 8.42 16 18 O -0.54 -8.98 16.66 5.30 0.09 -8.89 16 19 C 0.05 0.61 6.66 -84.06 -0.56 0.05 16 20 C -0.13 -1.31 9.98 -40.27 -0.40 -1.72 16 21 C -0.29 -2.00 11.41 29.58 0.34 -1.66 16 22 S 0.47 3.62 23.20 -107.50 -2.49 1.12 16 23 N -0.52 -6.04 10.71 24.84 0.27 -5.77 16 24 C -0.15 -2.38 7.38 -25.92 -0.19 -2.57 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.39 10.12 7.90 -40.82 -0.32 9.80 16 27 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 31 H 0.41 5.56 7.94 -40.82 -0.32 5.24 16 32 H 0.17 1.54 7.99 -52.49 -0.42 1.12 16 33 H 0.19 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -32.11 317.77 -8.66 -40.77 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.38 Total: 11.19 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.01 Total: -5.27 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.37 Total: -60.98 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.49 Total: 1.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.11 -8.66 -40.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086397415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.963 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds