Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48498 * 109.46746 * 269.99497 * 3 2 1 5 5 H 1.48498 * 109.47028 * 29.99356 * 3 2 1 6 6 H 1.48501 * 109.47477 * 149.99849 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.53002 * 113.62545 * 220.02302 * 12 11 10 14 14 N 1.46502 * 109.46813 * 272.49316 * 13 12 11 15 15 C 1.34780 * 119.99751 * 179.97438 * 14 13 12 16 16 O 1.21688 * 119.99880 * 0.02562 * 15 14 13 17 17 C 1.46680 * 119.99926 * 180.02562 * 15 14 13 18 18 C 1.35665 * 126.12960 * 179.72143 * 17 15 14 19 19 N 1.30947 * 114.18893 * 179.78568 * 18 17 15 20 20 C 1.29435 * 117.36018 * 0.51607 * 19 18 17 21 21 S 1.70950 * 110.39633 * 359.71526 * 20 19 18 22 22 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 23 23 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 25 25 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 26 26 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 27 27 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 28 28 H 1.09005 * 113.68989 * 89.12112 * 12 11 10 29 29 H 1.09005 * 109.46483 * 32.48989 * 13 12 11 30 30 H 1.08995 * 109.47301 * 152.49438 * 13 12 11 31 31 H 0.97002 * 119.99977 * 0.02562 * 14 13 12 32 32 H 1.07994 * 122.90345 * 359.95052 * 18 17 15 33 33 H 1.08002 * 124.79774 * 179.68711 * 20 19 18 34 34 H 1.09001 * 113.61158 * 203.66864 * 22 10 9 35 35 H 1.09000 * 113.61379 * 334.48654 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6478 -6.5453 -1.2582 14 7 0.0466 -6.6654 -2.5888 15 6 -0.1348 -7.8823 -3.1390 16 8 0.2004 -8.8813 -2.5304 17 6 -0.7362 -8.0025 -4.4714 18 6 -0.9702 -9.1583 -5.1421 19 7 -1.5228 -8.9940 -6.3178 20 6 -1.7650 -7.7803 -6.6969 21 16 -1.2775 -6.6710 -5.4910 22 6 1.2467 -4.8365 0.5617 23 1 -0.4849 0.8401 -0.0004 24 1 0.3556 -2.3880 0.0005 25 1 3.0559 -3.5695 0.4304 26 1 1.8839 -3.7164 -2.2045 27 1 2.8651 -5.0720 -1.4967 28 1 -0.1661 -4.5106 -1.1097 29 1 1.6471 -6.9807 -1.2704 30 1 0.0303 -7.0731 -0.5315 31 1 -0.2203 -5.8690 -3.0741 32 1 -0.7246 -10.1300 -4.7399 33 1 -2.2115 -7.5071 -7.6416 34 1 1.8648 -5.6494 0.9428 35 1 0.4649 -4.5361 1.2594 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090943306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = 18.267426 kcal Electronic energy + Delta-G solvation = -18711.383198 eV Core-core repulsion = 15643.313467 eV Total energy + Delta-G solvation = -3068.069731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29065 -40.41984 -39.66127 -36.08492 -35.00957 -32.33142 -31.65858 -28.91510 -26.89557 -26.43733 -25.64290 -23.52183 -22.58366 -21.12743 -20.23687 -19.56172 -19.27382 -17.89397 -17.20662 -16.76256 -16.62727 -16.11867 -15.83013 -15.41486 -15.32436 -14.99076 -14.81248 -14.69011 -14.53985 -13.76841 -13.28436 -12.93540 -12.92590 -12.64788 -12.61770 -12.15997 -12.07323 -11.67461 -11.49178 -11.33358 -10.95895 -10.84980 -10.74548 -10.68757 -10.21530 -10.07105 -8.99073 -7.94614 -5.22718 -0.81515 0.15343 0.54550 1.36903 1.49270 1.49924 1.58484 1.99118 2.05905 2.56604 3.28987 3.38184 3.65136 3.73351 3.76734 3.89518 4.11421 4.15771 4.31492 4.32798 4.39349 4.71576 4.74046 4.93685 4.97729 4.99408 5.09598 5.19430 5.34346 5.44502 5.53740 5.66121 6.27632 6.29295 6.52070 6.95172 7.34461 8.11479 8.33811 9.28618 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.003288 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.412287 B = 8514.425527 C = 9388.678190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.143 3.857 11 C -0.155 4.155 12 C -0.104 4.104 13 C 0.139 3.861 14 N -0.712 5.712 15 C 0.594 3.406 16 O -0.567 6.567 17 C -0.319 4.319 18 C 0.113 3.887 19 N -0.504 5.504 20 C 0.045 3.955 21 S 0.212 5.788 22 C -0.133 4.133 23 H 0.251 0.749 24 H 0.375 0.625 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.407 0.593 32 H 0.186 0.814 33 H 0.245 0.755 34 H 0.107 0.893 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -15.024 -11.958 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.359 5.359 10 C 0.033 3.967 11 C -0.195 4.195 12 C -0.123 4.123 13 C 0.016 3.984 14 N -0.362 5.362 15 C 0.380 3.620 16 O -0.448 6.448 17 C -0.443 4.443 18 C -0.045 4.045 19 N -0.217 5.217 20 C -0.248 4.248 21 S 0.467 5.533 22 C -0.172 4.172 23 H 0.060 0.940 24 H 0.207 0.793 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.243 0.757 32 H 0.203 0.797 33 H 0.261 0.739 34 H 0.126 0.874 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.377 -14.862 -11.807 19.129 hybrid contribution -0.056 0.570 0.158 0.594 sum -2.433 -14.293 -11.648 18.598 Atomic orbital electron populations 1.69804 1.06519 1.26053 1.59500 1.25521 0.96359 1.00952 1.03754 0.85176 0.77723 0.79666 0.77414 1.21398 1.22366 1.19541 1.19658 0.91512 0.85196 1.41049 0.90616 1.42304 1.05342 1.00552 1.87658 1.21381 0.95074 0.84946 0.95252 1.23780 0.97140 0.99260 0.99341 1.22566 0.98485 0.93493 0.97755 1.21433 0.98563 0.96050 0.82352 1.45935 1.62749 1.07550 1.20008 1.16956 0.77714 0.83528 0.83785 1.90811 1.52955 1.37596 1.63470 1.25722 1.17324 0.98972 1.02306 1.22353 0.94066 0.99581 0.88537 1.66347 1.16427 1.23516 1.15421 1.29570 1.00109 0.89924 1.05244 1.84108 1.51694 1.09200 1.08286 1.23328 1.00043 0.98651 0.95157 0.94017 0.79316 0.92279 0.93238 0.88941 0.89941 0.90725 0.91174 0.75694 0.79664 0.73897 0.87445 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.97 45.02 29.55 68.60 2.03 47.04 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.24 -13.07 9.97 84.04 0.84 -12.23 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.78 5.31 -320.45 -1.70 -36.48 16 10 C 0.14 5.29 4.55 45.51 0.21 5.50 16 11 C -0.15 -4.72 7.45 31.21 0.23 -4.49 16 12 C -0.10 -2.84 3.65 -10.18 -0.04 -2.88 16 13 C 0.14 3.35 5.51 86.38 0.48 3.83 16 14 N -0.71 -16.56 5.55 -467.07 -2.59 -19.16 16 15 C 0.59 15.38 7.79 86.45 0.67 16.06 16 16 O -0.57 -18.37 16.87 -4.31 -0.07 -18.44 16 17 C -0.32 -6.74 6.48 23.88 0.15 -6.59 16 18 C 0.11 2.36 11.09 84.23 0.93 3.30 16 19 N -0.50 -9.47 10.51 -202.56 -2.13 -11.59 16 20 C 0.05 0.56 12.22 130.60 1.60 2.15 16 21 S 0.21 2.99 22.35 -56.49 -1.26 1.72 16 22 C -0.13 -3.86 7.38 31.12 0.23 -3.63 16 23 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.37 19.34 7.90 -92.71 -0.73 18.61 16 25 H 0.06 2.19 8.11 -2.39 -0.02 2.18 16 26 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.09 2.41 7.90 -2.39 -0.02 2.39 16 28 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 29 H 0.07 1.79 7.85 -2.38 -0.02 1.77 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.41 8.34 7.66 -92.71 -0.71 7.63 16 32 H 0.19 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.11 2.54 8.10 -2.39 -0.02 2.52 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.67 318.45 0.01 -68.66 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.32 Total: 28.21 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.77 Total: -2.63 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.14 Total: -124.57 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.07 Total: -18.44 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.26 Total: 1.72 kcal Total: -68.67 0.01 -68.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090943306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.931 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds