Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48499 * 109.46920 * 239.99378 * 3 2 1 5 5 H 1.48504 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47429 * 119.99351 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21618 * 120.00347 * 0.02562 * 15 14 13 17 17 C 1.47268 * 119.99645 * 180.02562 * 15 14 13 18 18 N 1.30553 * 125.54000 * 359.69664 * 17 15 14 19 19 C 1.30707 * 115.90046 * 179.78329 * 18 17 15 20 20 C 1.34232 * 115.78412 * 0.51157 * 19 18 17 21 21 S 1.71071 * 109.09143 * 359.72941 * 20 19 18 22 22 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 23 23 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 25 25 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 26 26 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 27 27 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 28 28 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 29 29 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 30 30 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 31 31 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 32 32 H 1.08006 * 122.10518 * 180.22037 * 19 18 17 33 33 H 1.08008 * 125.45282 * 179.72694 * 20 19 18 34 34 H 1.09001 * 113.61158 * 203.66864 * 22 10 9 35 35 H 1.08998 * 113.61196 * 334.56885 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6459 -6.5453 -1.2576 14 7 0.0448 -6.6652 -2.5882 15 6 -0.1381 -7.8821 -3.1378 16 8 0.1954 -8.8808 -2.5290 17 6 -0.7418 -8.0026 -4.4756 18 7 -1.1430 -7.0076 -5.2195 19 6 -1.6487 -7.3305 -6.3807 20 6 -1.6986 -8.6445 -6.6508 21 16 -1.0469 -9.5126 -5.3286 22 6 1.2467 -4.8365 0.5617 23 1 -0.4849 0.8401 -0.0004 24 1 0.3556 -2.3880 0.0005 25 1 3.0559 -3.5695 0.4304 26 1 1.8839 -3.7164 -2.2045 27 1 2.8651 -5.0720 -1.4967 28 1 -0.1652 -4.5095 -1.1102 29 1 1.6445 -6.9821 -1.2693 30 1 0.0275 -7.0720 -0.5308 31 1 -0.2209 -5.8688 -3.0738 32 1 -2.0083 -6.5873 -7.0770 33 1 -2.0879 -9.0833 -7.5577 34 1 1.8648 -5.6494 0.9428 35 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091297050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = 42.074090 kcal Electronic energy + Delta-G solvation = -18699.918963 eV Core-core repulsion = 15632.881567 eV Total energy + Delta-G solvation = -3067.037396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36586 -39.31784 -38.40007 -34.74611 -33.21676 -31.12927 -30.06405 -27.77280 -26.08730 -25.05118 -23.71716 -22.34485 -21.60009 -20.11516 -18.91781 -18.26277 -17.36097 -17.04285 -15.99846 -15.74928 -15.41468 -14.93943 -14.49862 -14.22246 -14.02073 -13.72253 -13.56323 -13.19765 -12.88813 -12.28930 -11.91376 -11.85309 -11.39580 -11.04464 -10.83500 -10.68550 -10.49959 -10.21470 -10.17670 -10.03339 -9.87099 -9.68231 -9.49993 -9.31481 -9.02565 -8.87308 -6.99600 -5.79955 -3.09053 -0.06421 0.82876 1.37461 2.08764 3.01807 3.07146 3.43100 3.47530 3.48465 3.91461 4.56331 4.73394 4.75957 5.00277 5.03654 5.06247 5.23007 5.45786 5.61010 5.66414 5.70386 5.84000 5.93910 6.08840 6.21041 6.31080 6.37608 6.58613 6.76224 6.88963 7.05188 7.10507 7.41780 7.69129 7.97294 8.39234 9.49811 10.07415 10.41618 11.42432 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.003075 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.756398 B = 9104.872686 C = 9863.653608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.169 4.169 12 C -0.121 4.121 13 C 0.130 3.870 14 N -0.694 5.694 15 C 0.594 3.406 16 O -0.534 6.534 17 C -0.016 4.016 18 N -0.424 5.424 19 C 0.030 3.970 20 C -0.283 4.283 21 S 0.243 5.757 22 C -0.146 4.146 23 H 0.256 0.744 24 H 0.385 0.615 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.414 0.586 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.078 0.922 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -19.103 -11.549 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.055 3.945 11 C -0.210 4.210 12 C -0.139 4.139 13 C 0.007 3.993 14 N -0.345 5.345 15 C 0.375 3.625 16 O -0.411 6.411 17 C -0.291 4.291 18 N -0.141 5.141 19 C -0.127 4.127 20 C -0.424 4.424 21 S 0.498 5.502 22 C -0.186 4.186 23 H 0.066 0.934 24 H 0.219 0.781 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.250 0.750 32 H 0.196 0.804 33 H 0.202 0.798 34 H 0.096 0.904 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.516 -20.150 -10.604 22.908 hybrid contribution -0.507 2.001 -1.225 2.400 sum -3.023 -18.149 -11.829 21.874 Atomic orbital electron populations 1.69651 1.05136 1.25900 1.57374 1.24761 0.95534 0.97776 1.02763 0.86246 0.78520 0.83394 0.77891 1.21215 1.21688 1.21202 1.19241 0.91091 0.83985 1.43098 0.91047 1.42166 1.05689 0.99428 1.87191 1.21049 0.95029 0.85605 0.92804 1.23949 0.95403 0.99640 1.02029 1.22779 0.99859 0.92717 0.98575 1.21634 0.98187 0.97641 0.81854 1.45861 1.61211 1.07829 1.19621 1.16738 0.78724 0.84449 0.82585 1.90852 1.51708 1.36592 1.61977 1.27810 1.07993 0.92222 1.01036 1.66831 1.09881 1.32919 1.04498 1.21774 1.01692 0.95012 0.94211 1.26934 1.09907 0.98972 1.06571 1.84047 1.50226 1.09738 1.06207 1.23425 1.00603 0.99694 0.94858 0.93385 0.78088 0.92018 0.91376 0.91368 0.88692 0.91036 0.91260 0.75006 0.80388 0.79841 0.90354 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.39 5.31 -52.64 -0.28 -17.67 16 10 C 0.17 3.25 4.55 -67.12 -0.31 2.94 16 11 C -0.17 -2.83 7.45 -25.78 -0.19 -3.02 16 12 C -0.12 -1.81 3.64 -89.67 -0.33 -2.13 16 13 C 0.13 1.74 5.51 -4.04 -0.02 1.71 16 14 N -0.69 -9.26 5.55 -61.44 -0.34 -9.60 16 15 C 0.59 8.33 7.81 -12.59 -0.10 8.23 16 16 O -0.53 -8.64 16.94 5.26 0.09 -8.55 16 17 C -0.02 -0.19 7.46 -14.43 -0.11 -0.30 16 18 N -0.42 -5.03 10.24 -11.50 -0.12 -5.15 16 19 C 0.03 0.27 11.24 -19.44 -0.22 0.05 16 20 C -0.28 -2.04 11.09 29.32 0.33 -1.72 16 21 S 0.24 2.19 23.03 -107.50 -2.48 -0.29 16 22 C -0.15 -2.31 7.38 -25.92 -0.19 -2.50 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.39 10.03 7.90 -40.82 -0.32 9.70 16 25 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 26 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.41 5.35 8.13 -40.82 -0.33 5.02 16 32 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.18 0.73 8.06 -52.48 -0.42 0.30 16 34 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -31.61 319.44 -8.39 -40.00 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.40 Total: 10.41 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.38 Total: -4.01 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.01 Total: -59.56 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.48 Total: -0.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.61 -8.39 -40.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091297050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.076 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds