Wall clock time and date at job start Wed Apr 15 2020 11:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48499 * 109.46920 * 239.99378 * 3 2 1 5 5 H 1.48504 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47429 * 119.99351 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21618 * 120.00347 * 0.02562 * 15 14 13 17 17 C 1.47268 * 119.99645 * 180.02562 * 15 14 13 18 18 N 1.30553 * 125.54000 * 359.69664 * 17 15 14 19 19 C 1.30707 * 115.90046 * 179.78329 * 18 17 15 20 20 C 1.34232 * 115.78412 * 0.51157 * 19 18 17 21 21 S 1.71071 * 109.09143 * 359.72941 * 20 19 18 22 22 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 23 23 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 25 25 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 26 26 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 27 27 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 28 28 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 29 29 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 30 30 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 31 31 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 32 32 H 1.08006 * 122.10518 * 180.22037 * 19 18 17 33 33 H 1.08008 * 125.45282 * 179.72694 * 20 19 18 34 34 H 1.09001 * 113.61158 * 203.66864 * 22 10 9 35 35 H 1.08998 * 113.61196 * 334.56885 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6459 -6.5453 -1.2576 14 7 0.0448 -6.6652 -2.5882 15 6 -0.1381 -7.8821 -3.1378 16 8 0.1954 -8.8808 -2.5290 17 6 -0.7418 -8.0026 -4.4756 18 7 -1.1430 -7.0076 -5.2195 19 6 -1.6487 -7.3305 -6.3807 20 6 -1.6986 -8.6445 -6.6508 21 16 -1.0469 -9.5126 -5.3286 22 6 1.2467 -4.8365 0.5617 23 1 -0.4849 0.8401 -0.0004 24 1 0.3556 -2.3880 0.0005 25 1 3.0559 -3.5695 0.4304 26 1 1.8839 -3.7164 -2.2045 27 1 2.8651 -5.0720 -1.4967 28 1 -0.1652 -4.5095 -1.1102 29 1 1.6445 -6.9821 -1.2693 30 1 0.0275 -7.0720 -0.5308 31 1 -0.2209 -5.8688 -3.0738 32 1 -2.0083 -6.5873 -7.0770 33 1 -2.0879 -9.0833 -7.5577 34 1 1.8648 -5.6494 0.9428 35 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091297050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:55 Heat of formation + Delta-G solvation = 19.332745 kcal Electronic energy + Delta-G solvation = -18700.905102 eV Core-core repulsion = 15632.881567 eV Total energy + Delta-G solvation = -3068.023535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28361 -40.34897 -39.67693 -36.07600 -34.99231 -32.28209 -31.57597 -28.95577 -27.07222 -26.43186 -25.61203 -23.45241 -22.75210 -21.05327 -19.93674 -19.52080 -19.21104 -18.02284 -17.11988 -16.76496 -16.66585 -16.22002 -15.88677 -15.54631 -15.26464 -14.88193 -14.69695 -14.46502 -14.32422 -13.74000 -13.27596 -12.92603 -12.91209 -12.61640 -12.50262 -12.19672 -12.07797 -11.79165 -11.49695 -11.39959 -11.01747 -10.89692 -10.76500 -10.74122 -10.25311 -9.89984 -8.99460 -7.94644 -5.23048 -0.82341 0.09843 0.70153 1.27922 1.48075 1.50837 1.56870 2.10396 2.11344 2.56446 3.06833 3.37827 3.71330 3.77743 3.83754 4.01192 4.14659 4.28577 4.32565 4.37684 4.40613 4.71229 4.73794 4.93884 4.99403 5.05595 5.10567 5.20664 5.35084 5.44332 5.53590 5.66803 6.22614 6.28915 6.51968 6.94242 7.33777 8.11371 8.33421 9.28542 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.003075 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.756398 B = 9104.872686 C = 9863.653608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.721 5.721 10 C 0.144 3.856 11 C -0.156 4.156 12 C -0.105 4.105 13 C 0.138 3.862 14 N -0.695 5.695 15 C 0.594 3.406 16 O -0.563 6.563 17 C -0.062 4.062 18 N -0.441 5.441 19 C 0.007 3.993 20 C -0.252 4.252 21 S 0.272 5.728 22 C -0.130 4.130 23 H 0.251 0.749 24 H 0.374 0.626 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.414 0.586 32 H 0.201 0.799 33 H 0.223 0.777 34 H 0.110 0.890 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 -20.617 -12.889 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.034 3.966 11 C -0.196 4.196 12 C -0.124 4.124 13 C 0.015 3.985 14 N -0.346 5.346 15 C 0.377 3.623 16 O -0.443 6.443 17 C -0.335 4.335 18 N -0.160 5.160 19 C -0.150 4.150 20 C -0.393 4.393 21 S 0.526 5.474 22 C -0.169 4.169 23 H 0.060 0.940 24 H 0.206 0.794 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.251 0.749 32 H 0.218 0.782 33 H 0.240 0.760 34 H 0.129 0.871 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.049 -21.694 -11.940 24.847 hybrid contribution -0.644 2.344 -0.914 2.597 sum -2.694 -19.350 -12.854 23.386 Atomic orbital electron populations 1.69808 1.06595 1.26140 1.59461 1.25560 0.96379 1.01086 1.03732 0.85218 0.77195 0.79196 0.78193 1.20454 1.22257 1.20337 1.19643 0.91538 0.85218 1.41169 0.90542 1.42315 1.05329 1.00625 1.87656 1.21388 0.95150 0.84948 0.95139 1.23789 0.97240 0.99302 0.99286 1.22552 0.98339 0.93598 0.97872 1.21501 0.98736 0.96039 0.82188 1.45850 1.61170 1.07978 1.19562 1.16972 0.78160 0.83938 0.83255 1.90818 1.53163 1.37257 1.63032 1.27483 1.10870 0.94041 1.01089 1.66800 1.09931 1.33771 1.05533 1.22191 1.02363 0.96488 0.93915 1.27429 1.06980 0.98113 1.06809 1.83950 1.49253 1.08169 1.06047 1.23323 1.00000 0.98637 0.94969 0.94022 0.79400 0.92083 0.93727 0.88792 0.90367 0.90346 0.90791 0.74938 0.78194 0.75988 0.87124 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.32 13.06 21.65 0.28 -59.03 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.24 -13.53 9.97 84.04 0.84 -12.69 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.72 -36.11 5.31 -320.45 -1.70 -37.81 16 10 C 0.14 5.51 4.55 45.51 0.21 5.72 16 11 C -0.16 -5.09 7.45 31.21 0.23 -4.85 16 12 C -0.10 -3.07 3.64 -10.18 -0.04 -3.11 16 13 C 0.14 3.55 5.51 86.38 0.48 4.03 16 14 N -0.70 -18.41 5.55 -466.54 -2.59 -21.00 16 15 C 0.59 16.55 7.81 86.62 0.68 17.22 16 16 O -0.56 -18.07 16.94 -4.09 -0.07 -18.14 16 17 C -0.06 -1.48 7.46 87.26 0.65 -0.83 16 18 N -0.44 -10.14 10.24 -190.30 -1.95 -12.09 16 19 C 0.01 0.11 11.24 83.95 0.94 1.05 16 20 C -0.25 -2.83 11.09 66.90 0.74 -2.09 16 21 S 0.27 4.37 23.03 -56.49 -1.30 3.07 16 22 C -0.13 -3.94 7.38 31.12 0.23 -3.71 16 23 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 24 H 0.37 20.08 7.90 -92.71 -0.73 19.34 16 25 H 0.06 2.33 8.11 -2.39 -0.02 2.31 16 26 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.09 2.60 7.91 -2.39 -0.02 2.58 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.08 1.94 7.85 -2.39 -0.02 1.92 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.41 10.84 8.13 -92.71 -0.75 10.09 16 32 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -69.34 319.44 -0.23 -69.58 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.36 Total: 30.41 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.43 Total: -3.12 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -5.96 Total: -129.92 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.07 Total: -18.14 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.30 Total: 3.07 kcal Total: -69.34 -0.23 -69.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091297050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.910 kcal (2) G-P(sol) polarization free energy of solvation -69.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds