Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48496 * 109.47207 * 269.99748 * 3 2 1 5 5 H 1.48497 * 109.47292 * 29.99784 * 3 2 1 6 6 H 1.48500 * 109.47138 * 150.00007 * 3 2 1 7 7 C 1.38810 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00313 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47141 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47144 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00046 * 180.02562 * 12 11 10 14 14 O 1.21684 * 119.99860 * 359.97438 * 13 12 11 15 15 C 1.46681 * 119.99693 * 180.02562 * 13 12 11 16 16 C 1.35659 * 126.13303 * 359.97438 * 15 13 12 17 17 N 1.30942 * 114.19387 * 180.02562 * 16 15 13 18 18 C 1.29434 * 117.36033 * 0.02562 * 17 16 15 19 19 C 1.50702 * 124.80108 * 179.97438 * 18 17 16 20 20 C 1.53003 * 117.49845 * 8.65072 * 19 18 17 21 21 C 1.53000 * 117.50139 * 300.02680 * 19 18 17 22 22 S 1.70945 * 110.39171 * 0.02562 * 18 17 16 23 23 H 0.97006 * 119.99899 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99826 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46458 * 60.00755 * 10 9 7 26 26 H 1.08997 * 109.46902 * 300.00935 * 10 9 7 27 27 H 1.08996 * 109.47233 * 60.00544 * 11 10 9 28 28 H 1.08997 * 109.47734 * 300.00117 * 11 10 9 29 29 H 0.97000 * 119.99858 * 359.97438 * 12 11 10 30 30 H 1.08004 * 122.90245 * 359.97438 * 16 15 13 31 31 H 1.08998 * 115.54560 * 154.35140 * 19 18 17 32 32 H 1.09000 * 117.49760 * 359.97438 * 20 19 18 33 33 H 1.08998 * 117.49706 * 145.02376 * 20 19 18 34 34 H 1.09001 * 117.49435 * 214.98252 * 21 19 18 35 35 H 1.08997 * 117.49828 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0637 -4.8196 -0.0021 12 7 1.7961 -6.0885 -0.0026 13 6 1.1221 -7.2557 -0.0035 14 8 -0.0947 -7.2556 -0.0035 15 6 1.8555 -8.5260 -0.0035 16 6 3.2044 -8.6709 -0.0030 17 7 3.6103 -9.9158 -0.0036 18 6 2.7018 -10.8377 -0.0050 19 6 2.9796 -12.3189 -0.0065 20 6 4.4284 -12.7662 0.1979 21 6 3.7778 -12.8870 -1.1816 22 16 1.1424 -10.1373 -0.0065 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 2.6851 -3.7150 0.8879 26 1 2.6840 -3.7141 -0.8921 27 1 0.4367 -4.7613 -0.8918 28 1 0.4373 -4.7625 0.8881 29 1 2.7661 -6.0885 -0.0030 30 1 3.8846 -7.8320 -0.0031 31 1 2.1946 -12.9447 0.4182 32 1 5.1807 -11.9892 0.3330 33 1 4.5968 -13.6866 0.7571 34 1 3.5182 -13.8867 -1.5300 35 1 4.1017 -12.1894 -1.9540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148612428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = 45.944824 kcal Electronic energy + Delta-G solvation = -18169.679835 eV Core-core repulsion = 15102.810286 eV Total energy + Delta-G solvation = -3066.869549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.44713 -39.30456 -37.24806 -35.75176 -33.93167 -31.61321 -30.56150 -27.80734 -26.62753 -23.78906 -23.16507 -22.80958 -21.70584 -21.37358 -19.36973 -18.59848 -17.40599 -17.10974 -16.19381 -15.62813 -15.48467 -14.93146 -14.65744 -14.57180 -14.45495 -13.77991 -13.64376 -13.21836 -12.91465 -12.64319 -11.96708 -11.80515 -11.54391 -11.28093 -11.14974 -11.09359 -10.86364 -10.82690 -10.43862 -10.12227 -9.83965 -9.73358 -9.71261 -9.18081 -9.00449 -8.87221 -7.02108 -5.81487 -3.12521 -0.03408 0.84404 1.40603 2.16002 3.08433 3.19705 3.37646 3.41413 3.46473 3.48343 3.65225 4.28586 4.36395 4.50688 4.55525 4.65746 4.86021 4.94782 5.20581 5.33169 5.44537 5.47543 5.54413 5.70718 5.72432 5.76800 5.90717 6.08490 6.38118 6.65441 6.66002 7.29731 7.43179 7.64086 8.11529 8.35891 9.47301 10.01350 10.36111 11.41019 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046942 B = 0.002558 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.341019 B =10941.707661 C =11445.746966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.112 3.888 12 N -0.709 5.709 13 C 0.591 3.409 14 O -0.535 6.535 15 C -0.294 4.294 16 C 0.094 3.906 17 N -0.479 5.479 18 C 0.067 3.933 19 C -0.103 4.103 20 C -0.147 4.147 21 C -0.154 4.154 22 S 0.238 5.762 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.400 0.600 30 H 0.183 0.817 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -27.744 -0.393 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.016 3.984 11 C -0.011 4.011 12 N -0.360 5.360 13 C 0.375 3.625 14 O -0.413 6.413 15 C -0.418 4.418 16 C -0.065 4.065 17 N -0.193 5.193 18 C -0.207 4.207 19 C -0.124 4.124 20 C -0.187 4.187 21 C -0.193 4.193 22 S 0.498 5.502 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.235 0.765 30 H 0.200 0.800 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.165 -28.159 -0.375 28.828 hybrid contribution 1.219 1.831 0.021 2.200 sum 7.383 -26.327 -0.355 27.345 Atomic orbital electron populations 1.69668 1.05159 1.25886 1.57111 1.24789 0.95582 0.97859 1.02613 0.86138 0.78606 0.83542 0.77559 1.21604 1.21673 1.20690 1.19185 0.91043 0.83805 1.43537 0.90999 1.42179 1.06019 0.99509 1.89736 1.20759 0.93448 0.85612 0.98569 1.21665 0.95502 0.81010 1.02963 1.45678 1.10448 1.05531 1.74330 1.16665 0.86651 0.82091 0.77115 1.90863 1.12806 1.87391 1.50285 1.25836 0.97993 0.99129 1.18891 1.22158 0.92124 0.94325 0.97851 1.66019 1.36563 0.99718 1.17029 1.26512 0.93250 0.99130 1.01761 1.20563 0.97834 0.87025 1.07027 1.23031 0.93480 1.03182 0.98961 1.23071 1.02081 1.02283 0.91860 1.84052 1.07706 0.94978 1.63505 0.93332 0.77964 0.95658 0.95679 0.90875 0.90874 0.76529 0.80041 0.85255 0.87223 0.87929 0.87680 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.43 5.60 -59.91 -0.34 -18.77 16 10 C 0.14 2.79 6.37 -4.04 -0.03 2.76 16 11 C 0.11 1.91 5.79 -4.04 -0.02 1.88 16 12 N -0.71 -9.80 5.54 -61.62 -0.34 -10.14 16 13 C 0.59 8.89 7.79 -12.85 -0.10 8.79 16 14 O -0.54 -10.05 16.97 5.20 0.09 -9.96 16 15 C -0.29 -3.60 6.48 -37.10 -0.24 -3.84 16 16 C 0.09 0.99 10.93 -18.85 -0.21 0.79 16 17 N -0.48 -5.17 9.98 -11.50 -0.11 -5.29 16 18 C 0.07 0.64 6.96 -13.29 -0.09 0.55 16 19 C -0.10 -0.69 6.28 -91.77 -0.58 -1.27 16 20 C -0.15 -0.87 10.12 -26.73 -0.27 -1.15 16 21 C -0.15 -0.87 10.23 -26.73 -0.27 -1.14 16 22 S 0.24 2.47 23.01 -107.50 -2.47 0.00 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.39 10.34 7.67 -40.82 -0.31 10.02 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.40 4.29 7.18 -40.82 -0.29 4.00 16 30 H 0.18 1.43 7.15 -52.48 -0.38 1.06 16 31 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.11 0.80 7.84 -51.93 -0.41 0.40 16 33 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -33.73 322.59 -8.99 -42.71 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.32 Total: 6.85 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.06 Total: -0.03 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.07 Total: -61.68 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.47 Total: 0.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.73 -8.99 -42.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148612428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.660 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds