Wall clock time and date at job start Wed Apr 15 2020 11:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48496 * 109.47207 * 269.99748 * 3 2 1 5 5 H 1.48497 * 109.47292 * 29.99784 * 3 2 1 6 6 H 1.48500 * 109.47138 * 150.00007 * 3 2 1 7 7 C 1.38810 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00313 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47141 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47144 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00046 * 180.02562 * 12 11 10 14 14 O 1.21684 * 119.99860 * 359.97438 * 13 12 11 15 15 C 1.46681 * 119.99693 * 180.02562 * 13 12 11 16 16 C 1.35659 * 126.13303 * 359.97438 * 15 13 12 17 17 N 1.30942 * 114.19387 * 180.02562 * 16 15 13 18 18 C 1.29434 * 117.36033 * 0.02562 * 17 16 15 19 19 C 1.50702 * 124.80108 * 179.97438 * 18 17 16 20 20 C 1.53003 * 117.49845 * 8.65072 * 19 18 17 21 21 C 1.53000 * 117.50139 * 300.02680 * 19 18 17 22 22 S 1.70945 * 110.39171 * 0.02562 * 18 17 16 23 23 H 0.97006 * 119.99899 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99826 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46458 * 60.00755 * 10 9 7 26 26 H 1.08997 * 109.46902 * 300.00935 * 10 9 7 27 27 H 1.08996 * 109.47233 * 60.00544 * 11 10 9 28 28 H 1.08997 * 109.47734 * 300.00117 * 11 10 9 29 29 H 0.97000 * 119.99858 * 359.97438 * 12 11 10 30 30 H 1.08004 * 122.90245 * 359.97438 * 16 15 13 31 31 H 1.08998 * 115.54560 * 154.35140 * 19 18 17 32 32 H 1.09000 * 117.49760 * 359.97438 * 20 19 18 33 33 H 1.08998 * 117.49706 * 145.02376 * 20 19 18 34 34 H 1.09001 * 117.49435 * 214.98252 * 21 19 18 35 35 H 1.08997 * 117.49828 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 6 1.0637 -4.8196 -0.0021 12 7 1.7961 -6.0885 -0.0026 13 6 1.1221 -7.2557 -0.0035 14 8 -0.0947 -7.2556 -0.0035 15 6 1.8555 -8.5260 -0.0035 16 6 3.2044 -8.6709 -0.0030 17 7 3.6103 -9.9158 -0.0036 18 6 2.7018 -10.8377 -0.0050 19 6 2.9796 -12.3189 -0.0065 20 6 4.4284 -12.7662 0.1979 21 6 3.7778 -12.8870 -1.1816 22 16 1.1424 -10.1373 -0.0065 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 2.6851 -3.7150 0.8879 26 1 2.6840 -3.7141 -0.8921 27 1 0.4367 -4.7613 -0.8918 28 1 0.4373 -4.7625 0.8881 29 1 2.7661 -6.0885 -0.0030 30 1 3.8846 -7.8320 -0.0031 31 1 2.1946 -12.9447 0.4182 32 1 5.1807 -11.9892 0.3330 33 1 4.5968 -13.6866 0.7571 34 1 3.5182 -13.8867 -1.5300 35 1 4.1017 -12.1894 -1.9540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148612428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:57 Heat of formation + Delta-G solvation = 21.721304 kcal Electronic energy + Delta-G solvation = -18170.730245 eV Core-core repulsion = 15102.810286 eV Total energy + Delta-G solvation = -3067.919959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.36942 -40.38905 -37.81049 -37.36153 -35.59162 -33.32429 -31.77573 -29.29408 -27.57676 -25.59939 -24.01126 -23.27194 -23.21526 -22.44871 -20.40505 -19.50684 -19.14255 -18.20121 -17.07675 -16.87351 -16.70571 -16.37270 -15.83897 -15.57400 -15.38072 -15.09393 -15.07345 -14.87037 -14.53484 -13.20345 -13.14805 -13.05424 -12.71398 -12.68726 -12.49716 -12.36129 -12.09220 -11.92987 -11.86512 -11.73194 -11.36390 -11.00302 -10.67611 -10.59824 -10.29963 -9.83891 -9.07687 -7.97526 -5.29044 -0.88606 0.01882 0.59383 1.27516 1.48424 1.50737 1.59133 2.00858 2.01942 2.57187 2.82440 3.02045 3.36839 3.61958 3.71313 3.88523 3.95797 4.05304 4.06820 4.17166 4.18392 4.30030 4.55222 4.81522 4.87024 4.95652 4.96204 5.10385 5.15345 5.24226 5.30607 5.48114 6.23150 6.30247 6.49303 6.97911 7.29566 8.00927 8.23825 9.26097 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046942 B = 0.002558 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.341019 B =10941.707661 C =11445.746966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.747 5.747 10 C 0.149 3.851 11 C 0.129 3.871 12 N -0.696 5.696 13 C 0.594 3.406 14 O -0.581 6.581 15 C -0.328 4.328 16 C 0.113 3.887 17 N -0.498 5.498 18 C 0.083 3.917 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.145 4.145 22 S 0.235 5.765 23 H 0.252 0.748 24 H 0.374 0.626 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.417 0.583 30 H 0.207 0.793 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -29.454 -0.388 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.379 4.379 8 H 0.102 0.898 9 N -0.391 5.391 10 C 0.022 3.978 11 C 0.004 3.996 12 N -0.348 5.348 13 C 0.380 3.620 14 O -0.462 6.462 15 C -0.452 4.452 16 C -0.046 4.046 17 N -0.213 5.213 18 C -0.189 4.189 19 C -0.141 4.141 20 C -0.182 4.182 21 C -0.184 4.184 22 S 0.496 5.504 23 H 0.061 0.939 24 H 0.206 0.794 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.255 0.745 30 H 0.223 0.777 31 H 0.170 0.830 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.491 -29.910 -0.371 31.094 hybrid contribution 0.608 2.175 0.010 2.258 sum 9.099 -27.735 -0.361 29.192 Atomic orbital electron populations 1.69837 1.06826 1.26296 1.59125 1.25683 0.96457 1.01503 1.03372 0.85053 0.77708 0.78958 0.77484 1.21284 1.22338 1.19015 1.19646 0.91751 0.84794 1.41708 0.89832 1.42415 1.05792 1.01046 1.89808 1.20850 0.93522 0.83931 0.99517 1.21240 0.94862 0.81794 1.01655 1.45424 1.11173 1.04253 1.73975 1.16968 0.86200 0.82964 0.75862 1.90835 1.14815 1.88060 1.52522 1.25524 0.98620 0.98469 1.22600 1.22557 0.91750 0.95095 0.95246 1.66150 1.36765 0.99912 1.18451 1.27111 0.92555 1.00376 0.98897 1.20895 0.99211 0.85447 1.08554 1.23098 0.92147 1.03551 0.99451 1.23157 1.00945 1.03025 0.91262 1.84045 1.08349 0.94271 1.63689 0.93901 0.79403 0.94218 0.94226 0.92308 0.92308 0.74491 0.77679 0.83039 0.88790 0.85663 0.85240 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.75 -37.82 5.60 -343.45 -1.92 -39.74 16 10 C 0.15 5.59 6.37 86.37 0.55 6.14 16 11 C 0.13 4.41 5.79 86.37 0.50 4.91 16 12 N -0.70 -18.75 5.54 -467.09 -2.59 -21.33 16 13 C 0.59 17.88 7.79 86.45 0.67 18.55 16 14 O -0.58 -22.41 16.97 -4.30 -0.07 -22.48 16 15 C -0.33 -7.82 6.48 23.88 0.15 -7.67 16 16 C 0.11 2.20 10.93 84.23 0.92 3.12 16 17 N -0.50 -9.91 9.98 -190.30 -1.90 -11.81 16 18 C 0.08 1.46 6.96 88.46 0.62 2.07 16 19 C -0.12 -1.31 6.28 -11.54 -0.07 -1.39 16 20 C -0.14 -1.32 10.12 30.60 0.31 -1.01 16 21 C -0.14 -1.25 10.23 30.60 0.31 -0.93 16 22 S 0.24 4.74 23.01 -56.49 -1.30 3.44 16 23 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 24 H 0.37 20.50 7.67 -92.71 -0.71 19.79 16 25 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.42 8.19 7.18 -92.71 -0.67 7.52 16 30 H 0.21 2.73 7.15 -2.91 -0.02 2.71 16 31 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.20 7.84 -2.39 -0.02 1.19 16 33 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.13 0.50 8.14 -2.39 -0.02 0.49 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -72.98 322.59 -0.45 -73.43 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.24 Total: 23.38 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 5.27 Total: 7.00 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -6.13 Total: -132.50 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.07 Total: -22.48 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.30 Total: 3.44 kcal Total: -72.98 -0.45 -73.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148612428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.147 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds