Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47538 * 2 1 4 4 C 1.34723 * 126.53349 * 90.02639 * 3 2 1 5 5 S 1.71201 * 125.11363 * 359.96536 * 4 3 2 6 6 N 1.33207 * 109.77397 * 179.97438 * 4 3 2 7 7 C 1.32262 * 110.15507 * 359.97438 * 6 4 3 8 8 O 1.35297 * 126.29489 * 180.02562 * 7 6 4 9 9 C 1.39969 * 126.53720 * 269.71798 * 3 2 1 10 10 C 1.36405 * 127.13698 * 0.03654 * 9 3 2 11 11 C 1.51276 * 125.18286 * 11.23768 * 10 9 3 12 12 C 1.54407 * 105.19757 * 177.86057 * 11 10 9 13 13 C 1.54516 * 102.60192 * 344.67756 * 12 11 10 14 14 N 1.36125 * 125.18197 * 191.54525 * 10 9 3 15 15 C 1.36477 * 125.32699 * 20.37961 * 14 10 9 16 16 H 1.08003 * 119.99767 * 232.07921 * 15 14 10 17 17 C 1.39049 * 120.00207 * 52.08832 * 15 14 10 18 18 N 1.31351 * 120.00187 * 193.86967 * 17 15 14 19 19 Si 1.86801 * 120.00073 * 13.86404 * 17 15 14 20 20 H 1.48503 * 109.47262 * 85.69259 * 19 17 15 21 21 H 1.48503 * 109.47024 * 205.69571 * 19 17 15 22 22 H 1.48506 * 109.46763 * 325.69436 * 19 17 15 23 23 H 1.08996 * 109.47473 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46697 * 300.00143 * 1 2 3 25 25 H 1.08999 * 109.47518 * 59.99472 * 1 2 3 26 26 H 1.09009 * 109.46599 * 240.00398 * 2 1 3 27 27 H 1.08996 * 109.47076 * 120.00772 * 2 1 3 28 28 H 0.96707 * 113.99722 * 359.97438 * 8 7 6 29 29 H 1.08999 * 110.29843 * 296.92143 * 11 10 9 30 30 H 1.09008 * 110.29370 * 59.05554 * 11 10 9 31 31 H 1.09003 * 110.94546 * 226.31526 * 12 11 10 32 32 H 1.08994 * 110.75582 * 102.95218 * 12 11 10 33 33 H 1.09005 * 110.44100 * 268.08546 * 13 12 11 34 34 H 1.08992 * 110.54839 * 145.60967 * 13 12 11 35 35 H 0.97004 * 120.00365 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2863 2.1371 1.0825 5 16 2.1064 1.6289 2.7074 6 7 2.7119 3.3395 0.6984 7 6 2.7383 3.4132 -0.6219 8 8 3.1179 4.4839 -1.3568 9 6 2.3014 2.1649 -1.1246 10 6 2.1790 1.8015 -2.4336 11 6 1.4837 0.5532 -2.9303 12 6 1.5687 0.6281 -4.4702 13 6 1.9554 2.1039 -4.7152 14 7 2.6691 2.5038 -3.4917 15 6 3.6659 3.4338 -3.4280 16 1 3.5156 4.4163 -3.8505 17 6 4.8751 3.1164 -2.8192 18 7 5.7259 4.0689 -2.5122 19 14 5.2896 1.3353 -2.4378 20 1 5.9052 0.7036 -3.6325 21 1 6.2448 1.2817 -1.3020 22 1 4.0484 0.6049 -2.0758 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.3880 5.2476 -0.8286 29 1 1.9963 -0.3363 -2.5641 30 1 0.4415 0.5485 -2.6108 31 1 0.6048 0.4000 -4.9253 32 1 2.3411 -0.0420 -4.8474 33 1 1.0623 2.7138 -4.8515 34 1 2.6096 2.1890 -5.5827 35 1 6.5696 3.8475 -2.0878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075249397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = 50.606760 kcal Electronic energy + Delta-G solvation = -21391.119669 eV Core-core repulsion = 18324.452278 eV Total energy + Delta-G solvation = -3066.667392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.21921 -39.41838 -36.83971 -34.20716 -33.88523 -31.85633 -30.93183 -29.22539 -26.66574 -25.85224 -23.49294 -21.91585 -21.86166 -20.66747 -20.02454 -17.85328 -17.06343 -16.73555 -15.99858 -15.81165 -15.00736 -14.66828 -14.48737 -14.43332 -13.91591 -13.50014 -13.03402 -12.92646 -12.69979 -12.49837 -12.38794 -12.16600 -11.71812 -11.63738 -11.43007 -11.34598 -11.17404 -10.73239 -10.64631 -10.13765 -10.03990 -9.42228 -9.11615 -8.65079 -7.82531 -7.46953 -6.35600 -6.22715 -4.97787 0.94990 2.63894 2.75830 2.81518 3.02171 3.16480 3.47939 3.64761 3.78489 4.00664 4.06488 4.34227 4.56950 4.71755 4.76903 5.04973 5.20701 5.38519 5.46871 5.52041 5.54507 5.65941 5.69072 5.78292 5.88026 5.96734 6.11723 6.20783 6.45334 6.51509 6.76186 6.98564 7.18317 7.45810 7.76859 7.97086 8.21714 8.29569 8.87273 9.50696 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.009984 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.752586 B = 2803.780060 C = 3596.952370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.467 5.467 4 C 0.465 3.535 5 S -0.746 6.746 6 N -0.580 5.580 7 C 0.338 3.662 8 O -0.388 6.388 9 C -0.108 4.108 10 C 0.174 3.826 11 C -0.104 4.104 12 C -0.136 4.136 13 C 0.067 3.933 14 N -0.347 5.347 15 C -0.250 4.250 16 H 0.130 0.870 17 C 0.087 3.913 18 N -0.764 5.764 19 Si 0.869 3.131 20 H -0.264 1.264 21 H -0.265 1.265 22 H -0.237 1.237 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.382 0.618 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 -5.938 -13.683 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.164 5.164 4 C 0.100 3.900 5 S -0.614 6.614 6 N -0.321 5.321 7 C 0.144 3.856 8 O -0.180 6.180 9 C -0.220 4.220 10 C 0.038 3.962 11 C -0.142 4.142 12 C -0.174 4.174 13 C -0.055 4.055 14 N -0.020 5.020 15 C -0.381 4.381 16 H 0.147 0.853 17 C -0.135 4.135 18 N -0.388 5.388 19 Si 0.691 3.309 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.160 1.160 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.235 0.765 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.749 -5.802 -12.874 14.898 hybrid contribution 0.610 -0.491 -0.569 0.968 sum -4.139 -6.292 -13.443 15.409 Atomic orbital electron populations 1.22141 0.94926 1.02074 1.03041 1.21670 0.95116 0.80403 1.03850 1.45790 1.54369 1.12233 1.04022 1.22810 0.89639 0.85655 0.91895 1.92254 1.82688 1.83337 1.03131 1.71238 1.30675 1.20563 1.09581 1.20119 0.89571 0.87800 0.88063 1.85650 1.78718 1.21634 1.31959 1.15856 1.27678 0.92454 0.86029 1.19754 0.92070 0.96687 0.87725 1.21638 1.01659 0.95570 0.95331 1.22611 1.03030 0.96180 0.95603 1.23021 0.97999 0.95100 0.89341 1.43268 1.24248 1.30200 1.04326 1.19488 0.88886 0.94705 1.35013 0.85255 1.25725 0.95230 0.99824 0.92735 1.69584 1.08682 1.34092 1.26464 0.86644 0.81523 0.83060 0.79693 1.18911 1.18969 1.15986 0.91417 0.91088 0.92662 0.90393 0.88225 0.76502 0.89383 0.88660 0.89187 0.90243 0.90012 0.88698 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.08 37.16 0.37 -2.01 16 2 C 0.11 1.96 5.86 -4.05 -0.02 1.93 16 3 N -0.47 -10.19 2.83 -115.71 -0.33 -10.52 16 4 C 0.46 12.22 7.93 -88.36 -0.70 11.52 16 5 S -0.75 -21.42 30.30 -107.50 -3.26 -24.67 16 6 N -0.58 -15.18 11.22 -13.71 -0.15 -15.33 16 7 C 0.34 7.74 7.54 -16.13 -0.12 7.62 16 8 O -0.39 -8.02 8.89 -17.58 -0.16 -8.18 16 9 C -0.11 -2.26 4.91 -83.57 -0.41 -2.67 16 10 C 0.17 2.98 3.75 -81.07 -0.30 2.68 16 11 C -0.10 -1.28 4.96 -26.86 -0.13 -1.42 16 12 C -0.14 -1.26 7.16 -25.20 -0.18 -1.44 16 13 C 0.07 0.76 7.26 -2.87 -0.02 0.73 16 14 N -0.35 -5.68 2.38 -109.31 -0.26 -5.94 16 15 C -0.25 -4.79 6.98 -15.18 -0.11 -4.90 16 16 H 0.13 2.60 8.06 -52.48 -0.42 2.18 16 17 C 0.09 1.81 3.71 -17.46 -0.06 1.74 16 18 N -0.76 -16.58 13.64 55.50 0.76 -15.82 16 19 Si 0.87 17.24 26.68 -169.99 -4.53 12.71 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.24 -4.61 4.65 56.52 0.26 -4.34 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 25 H 0.05 0.74 6.33 -51.93 -0.33 0.41 16 26 H 0.08 1.14 5.22 -51.92 -0.27 0.87 16 27 H 0.10 1.87 7.62 -51.93 -0.40 1.48 16 28 H 0.38 6.98 9.06 45.56 0.41 7.40 16 29 H 0.09 1.06 6.00 -51.93 -0.31 0.75 16 30 H 0.10 1.05 6.22 -51.92 -0.32 0.73 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.30 6.26 8.31 -40.82 -0.34 5.92 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -32.96 290.60 -8.69 -41.66 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.45 Total: 7.93 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -1.69 Total: 13.79 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.02 Total: -47.62 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.16 Total: -8.18 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -4.53 Total: 12.71 kcal Atomic # 16 Polarization: -21.42 SS G_CDS: -3.26 Total: -24.67 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.96 -8.69 -41.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075249397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.264 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds