Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47538 * 2 1 4 4 C 1.34723 * 126.53349 * 90.02639 * 3 2 1 5 5 S 1.71201 * 125.11363 * 359.96536 * 4 3 2 6 6 N 1.33207 * 109.77397 * 179.97438 * 4 3 2 7 7 C 1.32262 * 110.15507 * 359.97438 * 6 4 3 8 8 O 1.35297 * 126.29489 * 180.02562 * 7 6 4 9 9 C 1.39969 * 126.53720 * 269.71798 * 3 2 1 10 10 C 1.36405 * 127.13698 * 0.03654 * 9 3 2 11 11 C 1.51276 * 125.18286 * 11.23768 * 10 9 3 12 12 C 1.54407 * 105.19757 * 177.86057 * 11 10 9 13 13 C 1.54516 * 102.60192 * 344.67756 * 12 11 10 14 14 N 1.36125 * 125.18197 * 191.54525 * 10 9 3 15 15 C 1.36477 * 125.32699 * 20.37961 * 14 10 9 16 16 H 1.08003 * 119.99767 * 232.07921 * 15 14 10 17 17 C 1.39049 * 120.00207 * 52.08832 * 15 14 10 18 18 N 1.31351 * 120.00187 * 193.86967 * 17 15 14 19 19 Si 1.86801 * 120.00073 * 13.86404 * 17 15 14 20 20 H 1.48503 * 109.47262 * 85.69259 * 19 17 15 21 21 H 1.48503 * 109.47024 * 205.69571 * 19 17 15 22 22 H 1.48506 * 109.46763 * 325.69436 * 19 17 15 23 23 H 1.08996 * 109.47473 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46697 * 300.00143 * 1 2 3 25 25 H 1.08999 * 109.47518 * 59.99472 * 1 2 3 26 26 H 1.09009 * 109.46599 * 240.00398 * 2 1 3 27 27 H 1.08996 * 109.47076 * 120.00772 * 2 1 3 28 28 H 0.96707 * 113.99722 * 359.97438 * 8 7 6 29 29 H 1.08999 * 110.29843 * 296.92143 * 11 10 9 30 30 H 1.09008 * 110.29370 * 59.05554 * 11 10 9 31 31 H 1.09003 * 110.94546 * 226.31526 * 12 11 10 32 32 H 1.08994 * 110.75582 * 102.95218 * 12 11 10 33 33 H 1.09005 * 110.44100 * 268.08546 * 13 12 11 34 34 H 1.08992 * 110.54839 * 145.60967 * 13 12 11 35 35 H 0.97004 * 120.00365 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2863 2.1371 1.0825 5 16 2.1064 1.6289 2.7074 6 7 2.7119 3.3395 0.6984 7 6 2.7383 3.4132 -0.6219 8 8 3.1179 4.4839 -1.3568 9 6 2.3014 2.1649 -1.1246 10 6 2.1790 1.8015 -2.4336 11 6 1.4837 0.5532 -2.9303 12 6 1.5687 0.6281 -4.4702 13 6 1.9554 2.1039 -4.7152 14 7 2.6691 2.5038 -3.4917 15 6 3.6659 3.4338 -3.4280 16 1 3.5156 4.4163 -3.8505 17 6 4.8751 3.1164 -2.8192 18 7 5.7259 4.0689 -2.5122 19 14 5.2896 1.3353 -2.4378 20 1 5.9052 0.7036 -3.6325 21 1 6.2448 1.2817 -1.3020 22 1 4.0484 0.6049 -2.0758 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.3880 5.2476 -0.8286 29 1 1.9963 -0.3363 -2.5641 30 1 0.4415 0.5485 -2.6108 31 1 0.6048 0.4000 -4.9253 32 1 2.3411 -0.0420 -4.8474 33 1 1.0623 2.7138 -4.8515 34 1 2.6096 2.1890 -5.5827 35 1 6.5696 3.8475 -2.0878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075249397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = 24.910165 kcal Electronic energy + Delta-G solvation = -21392.233957 eV Core-core repulsion = 18324.452278 eV Total energy + Delta-G solvation = -3067.781680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.86809 -40.78008 -38.44078 -35.70763 -35.42590 -33.12271 -32.35564 -30.70147 -28.02190 -27.32547 -24.96889 -23.29991 -23.21191 -22.02542 -21.58065 -19.40615 -18.69517 -18.25959 -17.52731 -17.13250 -16.59880 -16.11417 -15.93997 -15.90178 -15.34347 -14.82491 -14.52463 -14.43060 -14.10619 -13.79583 -13.58108 -13.29244 -13.10315 -12.94207 -12.78588 -12.53594 -12.37941 -12.25581 -12.19185 -11.97092 -11.32551 -10.99940 -10.88847 -10.25232 -9.60687 -9.13259 -8.56975 -8.12232 -6.65973 -0.60154 1.03643 1.12130 1.17889 1.33460 1.47929 1.86414 1.94942 2.20682 2.27505 2.54872 2.93888 3.38843 3.67321 3.77015 3.91257 4.04281 4.13350 4.17685 4.36872 4.58857 4.63783 4.69118 4.77495 4.82900 4.91774 4.97812 5.06263 5.18887 5.21839 5.30012 5.48024 5.55280 5.90312 6.12953 6.38121 6.52412 6.73619 7.13562 7.87125 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.009984 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.752586 B = 2803.780060 C = 3596.952370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 N -0.446 5.446 4 C 0.430 3.570 5 S -0.834 6.834 6 N -0.611 5.611 7 C 0.296 3.704 8 O -0.388 6.388 9 C -0.099 4.099 10 C 0.168 3.832 11 C -0.108 4.108 12 C -0.120 4.120 13 C 0.057 3.943 14 N -0.331 5.331 15 C -0.243 4.243 16 H 0.124 0.876 17 C 0.069 3.931 18 N -0.788 5.788 19 Si 0.889 3.111 20 H -0.236 1.236 21 H -0.306 1.306 22 H -0.227 1.227 23 H 0.108 0.892 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.387 0.613 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -8.165 -18.756 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 N -0.141 5.141 4 C 0.061 3.939 5 S -0.706 6.706 6 N -0.352 5.352 7 C 0.107 3.893 8 O -0.181 6.181 9 C -0.212 4.212 10 C 0.027 3.973 11 C -0.145 4.145 12 C -0.158 4.158 13 C -0.062 4.062 14 N -0.001 5.001 15 C -0.375 4.375 16 H 0.141 0.859 17 C -0.151 4.151 18 N -0.413 5.413 19 Si 0.712 3.288 20 H -0.159 1.159 21 H -0.233 1.233 22 H -0.150 1.150 23 H 0.127 0.873 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.134 0.866 27 H 0.096 0.904 28 H 0.241 0.759 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.497 -8.041 -18.058 20.808 hybrid contribution 1.190 0.261 0.595 1.356 sum -5.307 -7.779 -17.464 19.841 Atomic orbital electron populations 1.22076 0.92312 1.04465 1.02086 1.22129 0.97261 0.78085 1.04648 1.45969 1.51769 1.13232 1.03104 1.22057 0.93812 0.86822 0.91187 1.92144 1.86554 1.84592 1.07312 1.70945 1.30973 1.21302 1.11962 1.20273 0.92398 0.89407 0.87248 1.85585 1.79283 1.21647 1.31617 1.16241 1.26196 0.91504 0.87235 1.20411 0.91393 0.99101 0.86400 1.21878 1.02261 0.92580 0.97820 1.22722 1.05956 0.94227 0.92862 1.23483 0.98641 0.97244 0.86875 1.43870 1.22225 1.27590 1.06380 1.19443 0.88892 0.95515 1.33667 0.85896 1.26077 0.95876 1.00719 0.92450 1.69638 1.09203 1.34885 1.27622 0.86332 0.81010 0.82317 0.79158 1.15921 1.23303 1.14991 0.87303 0.94847 0.90718 0.86582 0.90375 0.75910 0.88328 0.86374 0.84899 0.88813 0.87569 0.86656 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 10.08 71.98 0.73 -3.28 16 2 C 0.10 3.28 5.86 86.38 0.51 3.79 16 3 N -0.45 -19.38 2.83 -519.98 -1.47 -20.84 16 4 C 0.43 23.57 7.93 179.56 1.42 25.00 16 5 S -0.83 -50.97 30.30 -56.49 -1.71 -52.68 16 6 N -0.61 -33.52 11.22 -310.35 -3.48 -37.00 16 7 C 0.30 13.78 7.54 85.43 0.64 14.43 16 8 O -0.39 -16.25 8.89 -85.84 -0.76 -17.02 16 9 C -0.10 -3.99 4.91 38.21 0.19 -3.80 16 10 C 0.17 5.04 3.75 41.65 0.16 5.19 16 11 C -0.11 -1.92 4.96 30.51 0.15 -1.77 16 12 C -0.12 -1.22 7.16 31.59 0.23 -0.99 16 13 C 0.06 0.89 7.26 86.76 0.63 1.52 16 14 N -0.33 -9.31 2.38 -499.76 -1.19 -10.50 16 15 C -0.24 -8.64 6.98 84.17 0.59 -8.05 16 16 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 17 C 0.07 2.77 3.71 84.96 0.32 3.08 16 18 N -0.79 -34.25 13.64 21.68 0.30 -33.95 16 19 Si 0.89 33.44 26.68 68.60 1.83 35.27 16 20 H -0.24 -7.80 7.11 99.48 0.71 -7.09 16 21 H -0.31 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.23 -8.03 4.65 99.48 0.46 -7.57 16 23 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.07 1.67 6.33 -2.39 -0.02 1.66 16 26 H 0.12 2.89 5.22 -2.38 -0.01 2.87 16 27 H 0.08 2.95 7.62 -2.39 -0.02 2.94 16 28 H 0.39 14.85 9.06 -74.05 -0.67 14.18 16 29 H 0.10 1.67 6.00 -2.39 -0.01 1.65 16 30 H 0.12 1.70 6.22 -2.38 -0.01 1.68 16 31 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.30 12.66 8.31 -92.71 -0.77 11.89 16 Total: -1.00 -79.99 290.60 -0.72 -80.71 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.22 Total: 20.90 kcal Atomic # 6 Polarization: 29.56 SS G_CDS: 5.55 Total: 35.11 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -5.85 Total: -102.30 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.76 Total: -17.02 kcal Atomic # 14 Polarization: 33.44 SS G_CDS: 1.83 Total: 35.27 kcal Atomic # 16 Polarization: -50.97 SS G_CDS: -1.71 Total: -52.68 kcal Total: -79.99 -0.72 -80.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075249397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.620 kcal (2) G-P(sol) polarization free energy of solvation -79.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds