Wall clock time and date at job start Wed Apr 15 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47387 * 2 1 4 4 C 1.34620 * 126.26534 * 276.31222 * 3 2 1 5 5 S 1.71205 * 125.03315 * 359.93701 * 4 3 2 6 6 N 1.34332 * 109.93416 * 179.97438 * 4 3 2 7 7 C 1.34726 * 109.62313 * 359.71294 * 6 4 3 8 8 O 1.21799 * 126.47885 * 180.27153 * 7 6 4 9 9 C 1.40309 * 126.26116 * 96.28430 * 3 2 1 10 10 C 1.35820 * 127.04180 * 0.02562 * 9 3 2 11 11 C 1.51276 * 125.21810 * 213.72405 * 10 9 3 12 12 C 1.54378 * 105.23580 * 177.99660 * 11 10 9 13 13 C 1.54497 * 102.60749 * 344.30653 * 12 11 10 14 14 N 1.36702 * 125.15076 * 33.60700 * 10 9 3 15 15 C 1.36580 * 125.44072 * 20.44107 * 14 10 9 16 16 H 1.07999 * 120.00340 * 14.11043 * 15 14 10 17 17 C 1.38965 * 119.99742 * 194.10374 * 15 14 10 18 18 N 1.31426 * 119.99854 * 14.41857 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 194.41640 * 17 15 14 20 20 H 1.48498 * 109.47219 * 90.00162 * 19 17 15 21 21 H 1.48504 * 109.47102 * 210.00504 * 19 17 15 22 22 H 1.48507 * 109.46990 * 330.00004 * 19 17 15 23 23 H 1.08993 * 109.47159 * 300.00245 * 1 2 3 24 24 H 1.09001 * 109.46324 * 60.00046 * 1 2 3 25 25 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47134 * 239.99605 * 2 1 3 27 27 H 1.08997 * 109.46978 * 120.00277 * 2 1 3 28 28 H 0.96999 * 125.19338 * 179.97438 * 6 4 3 29 29 H 1.09000 * 110.28965 * 59.06052 * 11 10 9 30 30 H 1.08993 * 110.37364 * 296.97782 * 11 10 9 31 31 H 1.09003 * 110.78229 * 226.02106 * 12 11 10 32 32 H 1.09011 * 110.94261 * 102.66238 * 12 11 10 33 33 H 1.09002 * 110.43967 * 145.82883 * 13 12 11 34 34 H 1.08998 * 110.43670 * 268.22224 * 13 12 11 35 35 H 0.97005 * 120.00441 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1714 2.1717 -1.0788 5 16 1.8217 1.7131 -2.6908 6 7 2.6398 3.3734 -0.7033 7 6 2.7987 3.3993 0.6343 8 8 3.2011 4.3382 1.2977 9 6 2.4119 2.1223 1.1246 10 6 2.4165 1.7068 2.4176 11 6 2.1348 2.5845 3.6171 12 6 2.2104 1.6413 4.8368 13 6 2.1279 0.2421 4.1867 14 7 2.6743 0.4302 2.8332 15 6 3.3362 -0.5199 2.1089 16 1 3.8986 -0.2359 1.2317 17 6 3.2862 -1.8522 2.5008 18 7 2.3923 -2.2453 3.3804 19 14 4.4896 -3.0844 1.7776 20 1 5.7093 -3.1397 2.6228 21 1 3.8566 -4.4270 1.7333 22 1 4.8594 -2.6659 0.4015 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.8306 4.1114 -1.3032 29 1 1.1399 3.0228 3.5394 30 1 2.8874 3.3687 3.6985 31 1 1.3667 1.8070 5.5068 32 1 3.1542 1.7660 5.3679 33 1 2.7318 -0.4732 4.7450 34 1 1.0921 -0.0933 4.1358 35 1 2.3570 -3.1754 3.6537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000210951309.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:52 Heat of formation + Delta-G solvation = 25.965660 kcal Electronic energy + Delta-G solvation = -20955.148198 eV Core-core repulsion = 17887.412288 eV Total energy + Delta-G solvation = -3067.735910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.51571 -39.32593 -36.68536 -34.47476 -34.21345 -31.53031 -30.93871 -29.21612 -26.45538 -26.15730 -23.85012 -22.16807 -21.58423 -20.59970 -19.67080 -18.27596 -17.32843 -16.06596 -15.97023 -15.45608 -15.13241 -15.01192 -14.84416 -14.27480 -13.74853 -13.30938 -13.21497 -12.97978 -12.79222 -12.32995 -12.03858 -11.89165 -11.62788 -11.45639 -11.36332 -11.19455 -11.01097 -10.91661 -10.66591 -10.55045 -9.97191 -9.70496 -9.24010 -9.08547 -7.77998 -7.64554 -6.84607 -6.48306 -4.80128 1.34877 2.51239 2.61391 2.68794 2.71211 2.85301 3.24627 3.58455 3.78768 3.81855 4.04339 4.22825 4.88017 5.06410 5.22509 5.52432 5.57142 5.72543 5.78004 5.95229 5.98159 6.02349 6.15490 6.17217 6.25845 6.29138 6.36532 6.41491 6.57843 6.66593 6.72238 6.95370 7.13906 7.39806 7.76570 7.85118 7.99300 8.40018 8.97062 9.26218 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.008741 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.871839 B = 3202.692715 C = 4310.072073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.086 3.914 3 N -0.404 5.404 4 C 0.476 3.524 5 S -0.722 6.722 6 N -0.620 5.620 7 C 0.520 3.480 8 O -0.571 6.571 9 C -0.239 4.239 10 C 0.178 3.822 11 C -0.080 4.080 12 C -0.145 4.145 13 C 0.100 3.900 14 N -0.320 5.320 15 C -0.279 4.279 16 H 0.128 0.872 17 C 0.042 3.958 18 N -0.804 5.804 19 Si 0.943 3.057 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.251 1.251 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.136 0.864 28 H 0.425 0.575 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -2.314 7.793 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.035 4.035 3 N -0.094 5.094 4 C 0.114 3.886 5 S -0.593 6.593 6 N -0.264 5.264 7 C 0.323 3.677 8 O -0.457 6.457 9 C -0.348 4.348 10 C 0.036 3.964 11 C -0.119 4.119 12 C -0.184 4.184 13 C -0.022 4.022 14 N 0.012 4.988 15 C -0.409 4.409 16 H 0.145 0.855 17 C -0.175 4.175 18 N -0.431 5.431 19 Si 0.764 3.236 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.174 1.174 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.153 0.847 28 H 0.266 0.734 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.727 -2.946 7.676 8.254 hybrid contribution 0.611 -0.176 0.029 0.636 sum -0.116 -3.122 7.705 8.314 Atomic orbital electron populations 1.21994 0.95181 1.02029 1.02390 1.22715 0.95174 0.78433 1.07168 1.44957 1.48373 1.11974 1.04130 1.21754 0.90953 0.83480 0.92379 1.92851 1.78970 1.86118 1.01388 1.43928 1.57848 1.13671 1.10983 1.16568 0.81960 0.88427 0.80785 1.90763 1.53544 1.40157 1.61210 1.16738 1.37006 0.94119 0.86922 1.19390 0.98998 0.86419 0.91591 1.21174 1.03334 0.97413 0.89969 1.22735 1.02935 0.95083 0.97612 1.22640 1.00744 0.96596 0.82233 1.44168 1.32778 1.09750 1.12094 1.20338 1.21613 0.86889 1.12054 0.85494 1.25962 0.96943 0.98692 0.95898 1.69893 1.27511 1.20550 1.25106 0.85565 0.79103 0.78050 0.80858 1.18537 1.19127 1.17413 0.92973 0.91578 0.91559 0.89335 0.84684 0.73414 0.89840 0.88777 0.89850 0.90662 0.88253 0.89690 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 37.16 0.38 -2.41 16 2 C 0.09 1.68 5.80 -4.04 -0.02 1.65 16 3 N -0.40 -8.54 2.80 -115.26 -0.32 -8.87 16 4 C 0.48 10.66 7.95 -87.46 -0.70 9.96 16 5 S -0.72 -17.71 30.39 -107.50 -3.27 -20.97 16 6 N -0.62 -12.96 5.87 -15.53 -0.09 -13.05 16 7 C 0.52 11.46 8.24 -14.78 -0.12 11.34 16 8 O -0.57 -13.43 17.26 5.10 0.09 -13.34 16 9 C -0.24 -5.04 6.15 -83.34 -0.51 -5.55 16 10 C 0.18 3.38 6.27 -81.00 -0.51 2.87 16 11 C -0.08 -1.25 6.33 -26.88 -0.17 -1.43 16 12 C -0.15 -1.87 7.16 -25.22 -0.18 -2.05 16 13 C 0.10 1.56 5.51 -2.89 -0.02 1.54 16 14 N -0.32 -5.87 2.81 -109.33 -0.31 -6.18 16 15 C -0.28 -5.36 6.03 -15.17 -0.09 -5.45 16 16 H 0.13 2.63 7.48 -52.49 -0.39 2.24 16 17 C 0.04 0.75 5.13 -17.46 -0.09 0.66 16 18 N -0.80 -14.36 11.00 55.50 0.61 -13.75 16 19 Si 0.94 14.76 29.58 -169.99 -5.03 9.74 16 20 H -0.26 -4.09 7.11 56.52 0.40 -3.69 16 21 H -0.27 -4.13 7.11 56.52 0.40 -3.73 16 22 H -0.25 -4.15 7.11 56.52 0.40 -3.74 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.79 7.80 -51.93 -0.40 1.38 16 27 H 0.14 2.67 3.48 -51.93 -0.18 2.49 16 28 H 0.42 7.90 8.96 -40.82 -0.37 7.54 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.55 7.74 -51.93 -0.40 1.15 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.10 1.59 6.97 -51.93 -0.36 1.23 16 34 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 35 H 0.30 4.94 8.31 -40.82 -0.34 4.60 16 LS Contribution 303.58 15.07 4.57 4.57 Total: -1.00 -26.68 303.58 -9.97 -36.65 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -4.20 Total: 14.07 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -2.03 Total: 11.13 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.11 Total: -41.84 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 14.76 SS G_CDS: -5.03 Total: 9.74 kcal Atomic # 16 Polarization: -17.71 SS G_CDS: -3.27 Total: -20.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.68 -9.97 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210951309.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.616 kcal (2) G-P(sol) polarization free energy of solvation -26.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds