Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47387 * 2 1 4 4 C 1.34620 * 126.26534 * 276.31222 * 3 2 1 5 5 S 1.71205 * 125.03315 * 359.93701 * 4 3 2 6 6 N 1.34332 * 109.93416 * 179.97438 * 4 3 2 7 7 C 1.34726 * 109.62313 * 359.71294 * 6 4 3 8 8 O 1.21799 * 126.47885 * 180.27153 * 7 6 4 9 9 C 1.40309 * 126.26116 * 96.28430 * 3 2 1 10 10 C 1.35820 * 127.04180 * 0.02562 * 9 3 2 11 11 C 1.51276 * 125.21810 * 213.72405 * 10 9 3 12 12 C 1.54378 * 105.23580 * 177.99660 * 11 10 9 13 13 C 1.54497 * 102.60749 * 344.30653 * 12 11 10 14 14 N 1.36702 * 125.15076 * 33.60700 * 10 9 3 15 15 C 1.36580 * 125.44072 * 20.44107 * 14 10 9 16 16 H 1.07999 * 120.00340 * 14.11043 * 15 14 10 17 17 C 1.38965 * 119.99742 * 194.10374 * 15 14 10 18 18 N 1.31426 * 119.99854 * 14.41857 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 194.41640 * 17 15 14 20 20 H 1.48498 * 109.47219 * 90.00162 * 19 17 15 21 21 H 1.48504 * 109.47102 * 210.00504 * 19 17 15 22 22 H 1.48507 * 109.46990 * 330.00004 * 19 17 15 23 23 H 1.08993 * 109.47159 * 300.00245 * 1 2 3 24 24 H 1.09001 * 109.46324 * 60.00046 * 1 2 3 25 25 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47134 * 239.99605 * 2 1 3 27 27 H 1.08997 * 109.46978 * 120.00277 * 2 1 3 28 28 H 0.96999 * 125.19338 * 179.97438 * 6 4 3 29 29 H 1.09000 * 110.28965 * 59.06052 * 11 10 9 30 30 H 1.08993 * 110.37364 * 296.97782 * 11 10 9 31 31 H 1.09003 * 110.78229 * 226.02106 * 12 11 10 32 32 H 1.09011 * 110.94261 * 102.66238 * 12 11 10 33 33 H 1.09002 * 110.43967 * 145.82883 * 13 12 11 34 34 H 1.08998 * 110.43670 * 268.22224 * 13 12 11 35 35 H 0.97005 * 120.00441 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1714 2.1717 -1.0788 5 16 1.8217 1.7131 -2.6908 6 7 2.6398 3.3734 -0.7033 7 6 2.7987 3.3993 0.6343 8 8 3.2011 4.3382 1.2977 9 6 2.4119 2.1223 1.1246 10 6 2.4165 1.7068 2.4176 11 6 2.1348 2.5845 3.6171 12 6 2.2104 1.6413 4.8368 13 6 2.1279 0.2421 4.1867 14 7 2.6743 0.4302 2.8332 15 6 3.3362 -0.5199 2.1089 16 1 3.8986 -0.2359 1.2317 17 6 3.2862 -1.8522 2.5008 18 7 2.3923 -2.2453 3.3804 19 14 4.4896 -3.0844 1.7776 20 1 5.7093 -3.1397 2.6228 21 1 3.8566 -4.4270 1.7333 22 1 4.8594 -2.6659 0.4015 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.8306 4.1114 -1.3032 29 1 1.1399 3.0228 3.5394 30 1 2.8874 3.3687 3.6985 31 1 1.3667 1.8070 5.5068 32 1 3.1542 1.7660 5.3679 33 1 2.7318 -0.4732 4.7450 34 1 1.0921 -0.0933 4.1358 35 1 2.3570 -3.1754 3.6537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000210951309.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = 11.839569 kcal Electronic energy + Delta-G solvation = -20955.760752 eV Core-core repulsion = 17887.412288 eV Total energy + Delta-G solvation = -3068.348463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.16198 -40.76734 -38.34985 -35.97622 -35.82369 -32.90170 -32.48285 -30.73219 -27.90922 -27.68601 -25.46067 -23.69667 -22.88295 -22.21564 -21.15463 -19.91821 -18.87980 -17.62740 -17.45462 -17.10047 -16.67581 -16.53169 -16.34806 -15.78186 -15.28758 -14.86913 -14.57897 -14.49494 -14.19733 -13.65166 -13.41288 -13.29843 -13.13419 -12.82084 -12.75911 -12.67837 -12.45108 -12.24394 -12.19586 -12.03682 -11.33878 -11.19855 -10.89277 -10.62760 -9.48178 -9.21665 -8.77122 -8.17294 -6.39699 -0.21500 0.88351 1.07746 1.29047 1.39457 1.45302 1.90243 1.94810 2.19875 2.33532 2.44552 2.68395 3.63303 3.82157 3.95894 4.11774 4.17498 4.21018 4.34022 4.47491 4.61573 4.68953 4.71708 4.83067 4.88737 4.95607 5.03227 5.10285 5.16595 5.27415 5.30736 5.36891 5.55461 5.87502 6.10774 6.23522 6.43840 6.83896 7.32439 7.76308 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.008741 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.871839 B = 3202.692715 C = 4310.072073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 N -0.390 5.390 4 C 0.453 3.547 5 S -0.780 6.780 6 N -0.606 5.606 7 C 0.499 3.501 8 O -0.599 6.599 9 C -0.241 4.241 10 C 0.142 3.858 11 C -0.074 4.074 12 C -0.127 4.127 13 C 0.096 3.904 14 N -0.304 5.304 15 C -0.286 4.286 16 H 0.109 0.891 17 C 0.031 3.969 18 N -0.792 5.792 19 Si 0.990 3.010 20 H -0.255 1.255 21 H -0.255 1.255 22 H -0.269 1.269 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.431 0.569 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -4.393 10.644 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 N -0.079 5.079 4 C 0.090 3.910 5 S -0.652 6.652 6 N -0.250 5.250 7 C 0.304 3.696 8 O -0.488 6.488 9 C -0.350 4.350 10 C -0.002 4.002 11 C -0.113 4.113 12 C -0.165 4.165 13 C -0.025 4.025 14 N 0.031 4.969 15 C -0.417 4.417 16 H 0.127 0.873 17 C -0.187 4.187 18 N -0.417 5.417 19 Si 0.810 3.190 20 H -0.179 1.179 21 H -0.179 1.179 22 H -0.193 1.193 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.154 0.846 28 H 0.273 0.727 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.993 -5.032 10.552 11.732 hybrid contribution 0.731 0.113 -0.549 0.921 sum -0.262 -4.918 10.003 11.150 Atomic orbital electron populations 1.21907 0.93442 1.03438 1.01656 1.22824 0.96516 0.77637 1.06584 1.45159 1.46560 1.12148 1.03993 1.21287 0.93875 0.84256 0.91626 1.92784 1.81635 1.86923 1.03904 1.43807 1.56766 1.13422 1.10990 1.16694 0.83076 0.88971 0.80828 1.90727 1.55713 1.40952 1.61444 1.17015 1.36534 0.93870 0.87593 1.19729 1.01110 0.87430 0.91886 1.21154 1.03364 0.97099 0.89688 1.22751 1.05211 0.91880 0.96669 1.22863 1.00588 0.98492 0.80555 1.44516 1.30138 1.09195 1.13040 1.20411 1.21418 0.87913 1.11990 0.87299 1.26419 0.97634 0.98901 0.95789 1.69867 1.26579 1.21815 1.23474 0.84895 0.77943 0.76851 0.79356 1.17913 1.17892 1.19297 0.92769 0.93139 0.89036 0.90336 0.84569 0.72695 0.89038 0.89870 0.86359 0.89471 0.88267 0.89200 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 10.24 71.98 0.74 -4.30 16 2 C 0.08 3.28 5.80 86.38 0.50 3.78 16 3 N -0.39 -16.75 2.80 -518.59 -1.45 -18.21 16 4 C 0.45 20.93 7.95 179.24 1.43 22.36 16 5 S -0.78 -39.68 30.39 -56.49 -1.72 -41.39 16 6 N -0.61 -26.30 5.87 -321.26 -1.88 -28.19 16 7 C 0.50 22.57 8.24 85.22 0.70 23.27 16 8 O -0.60 -28.88 17.26 -4.67 -0.08 -28.96 16 9 C -0.24 -10.23 6.15 38.19 0.23 -10.00 16 10 C 0.14 5.26 6.27 41.42 0.26 5.52 16 11 C -0.07 -2.18 6.33 30.50 0.19 -1.99 16 12 C -0.13 -2.78 7.16 31.57 0.23 -2.56 16 13 C 0.10 2.65 5.51 86.76 0.48 3.12 16 14 N -0.30 -10.51 2.81 -499.82 -1.40 -11.91 16 15 C -0.29 -10.47 6.03 84.13 0.51 -9.96 16 16 H 0.11 4.46 7.48 -2.91 -0.02 4.44 16 17 C 0.03 1.03 5.13 84.93 0.44 1.47 16 18 N -0.79 -25.14 11.00 21.67 0.24 -24.90 16 19 Si 0.99 27.73 29.58 68.60 2.03 29.75 16 20 H -0.25 -6.99 7.11 99.48 0.71 -6.29 16 21 H -0.26 -6.75 7.11 99.48 0.71 -6.04 16 22 H -0.27 -8.38 7.11 99.48 0.71 -7.67 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.08 3.21 7.80 -2.39 -0.02 3.19 16 27 H 0.14 5.22 3.48 -2.39 -0.01 5.21 16 28 H 0.43 16.84 8.96 -92.71 -0.83 16.01 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.08 2.66 7.74 -2.39 -0.02 2.64 16 31 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 2.77 6.97 -2.39 -0.02 2.76 16 34 H 0.09 2.47 8.13 -2.39 -0.02 2.45 16 35 H 0.31 8.91 8.31 -92.70 -0.77 8.14 16 Total: -1.00 -57.59 303.58 1.73 -55.86 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.30 Total: 37.24 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 5.70 Total: 30.71 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -4.50 Total: -83.21 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.08 Total: -28.96 kcal Atomic # 14 Polarization: 27.73 SS G_CDS: 2.03 Total: 29.75 kcal Atomic # 16 Polarization: -39.68 SS G_CDS: -1.72 Total: -41.39 kcal Total: -57.59 1.73 -55.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210951309.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.701 kcal (2) G-P(sol) polarization free energy of solvation -57.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds