Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 N 1.46494 * 109.47105 * 239.99349 * 2 1 3 5 5 C 1.34781 * 119.99863 * 85.00356 * 4 2 1 6 6 O 1.21691 * 119.99960 * 359.97438 * 5 4 2 7 7 C 1.46687 * 119.99951 * 179.97438 * 5 4 2 8 8 C 1.35667 * 126.12570 * 180.02562 * 7 5 4 9 9 N 1.30944 * 114.18667 * 180.02562 * 8 7 5 10 10 C 1.29431 * 117.36424 * 359.97438 * 9 8 7 11 11 S 1.70951 * 110.39232 * 359.72841 * 10 9 8 12 12 C 1.53000 * 109.46774 * 119.99801 * 2 1 3 13 13 C 1.53498 * 114.20476 * 299.99885 * 12 2 1 14 14 N 1.47072 * 87.98531 * 87.52370 * 13 12 2 15 15 C 1.36937 * 136.05474 * 207.08946 * 14 13 12 16 16 H 1.07997 * 120.00175 * 6.65345 * 15 14 13 17 17 C 1.38812 * 119.99799 * 186.65772 * 15 14 13 18 18 N 1.31617 * 119.99791 * 6.44001 * 17 15 14 19 19 Si 1.86796 * 120.00183 * 186.44246 * 17 15 14 20 20 H 1.48498 * 109.47075 * 265.01704 * 19 17 15 21 21 H 1.48500 * 109.46850 * 25.01427 * 19 17 15 22 22 H 1.48496 * 109.47374 * 145.01871 * 19 17 15 23 23 C 1.47066 * 87.88224 * 27.34172 * 14 13 12 24 24 H 1.08995 * 109.47689 * 300.00395 * 1 2 3 25 25 H 1.08999 * 109.46965 * 60.00649 * 1 2 3 26 26 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00380 * 264.99872 * 4 2 1 28 28 H 1.07991 * 122.90782 * 0.03209 * 8 7 5 29 29 H 1.07999 * 124.80263 * 180.02562 * 10 9 8 30 30 H 1.08994 * 113.41432 * 166.80325 * 12 2 1 31 31 H 1.09000 * 113.47213 * 332.73897 * 13 12 2 32 32 H 1.09002 * 113.52190 * 202.30784 * 13 12 2 33 33 H 0.97000 * 119.99892 * 179.97438 * 18 17 15 34 34 H 1.09000 * 113.46757 * 87.44265 * 23 14 13 35 35 H 1.08999 * 113.46471 * 217.87772 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8573 1.1622 -2.4119 7 6 2.6366 -0.7099 -3.5546 8 6 2.8137 -0.1574 -4.7809 9 7 3.2629 -0.9912 -5.6852 10 6 3.4800 -2.2118 -5.3133 11 16 3.1073 -2.4049 -3.6562 12 6 2.0399 -0.7212 1.2493 13 6 1.5897 -0.0845 2.5714 14 7 0.3743 -0.9090 2.4946 15 6 -0.9132 -0.8124 2.9511 16 1 -1.2493 0.0949 3.4309 17 6 -1.7861 -1.8807 2.7972 18 7 -1.3448 -3.0289 2.3291 19 14 -3.5870 -1.6886 3.2543 20 1 -3.7999 -2.1730 4.6418 21 1 -3.9701 -0.2566 3.1657 22 1 -4.4227 -2.4834 2.3189 23 6 1.1518 -1.8858 1.7173 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2491 -1.6319 -1.1524 28 1 2.6027 0.8802 -4.9930 29 1 3.8494 -2.9960 -5.9575 30 1 3.1024 -0.9609 1.2077 31 1 1.3944 0.9851 2.4938 32 1 2.2316 -0.3353 3.4159 33 1 -1.9547 -3.7755 2.2219 34 1 1.6788 -2.6121 2.3360 35 1 0.5833 -2.3509 0.9120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969359626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = 77.636180 kcal Electronic energy + Delta-G solvation = -19699.841785 eV Core-core repulsion = 16634.346477 eV Total energy + Delta-G solvation = -3065.495308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.27103 -39.45726 -38.29034 -34.53291 -32.25623 -31.16549 -29.38782 -27.73997 -26.19449 -24.75645 -24.21283 -22.45775 -20.89964 -20.16302 -19.19316 -18.28162 -16.89632 -16.52429 -16.01135 -15.27264 -15.18055 -14.87442 -14.36638 -14.19839 -14.10520 -13.79527 -13.59960 -12.64628 -12.43470 -11.89967 -11.73065 -11.26365 -11.14288 -11.02020 -10.79701 -10.62456 -10.42019 -10.23658 -9.93881 -9.83172 -9.75341 -9.73776 -9.29949 -9.22636 -8.77280 -8.75059 -6.86142 -5.82145 -3.12118 0.06943 0.98268 1.37001 2.33564 3.18322 3.24084 3.36990 3.43505 3.44599 4.04927 4.43835 4.80155 4.91797 5.12213 5.23124 5.25527 5.34450 5.51671 5.85225 5.88372 6.01021 6.26204 6.32953 6.44860 6.58875 6.65376 6.68504 6.94692 7.12953 7.21264 7.32845 7.41860 7.50490 7.63369 7.93156 8.23681 9.00340 9.67110 10.61309 11.36397 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.004213 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.965117 B = 6643.738524 C = 6859.354840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.081 0.919 4 N -0.710 5.710 5 C 0.592 3.408 6 O -0.529 6.529 7 C -0.280 4.280 8 C 0.108 3.892 9 N -0.477 5.477 10 C 0.024 3.976 11 S 0.174 5.826 12 C -0.164 4.164 13 C 0.126 3.874 14 N -0.603 5.603 15 C -0.215 4.215 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.919 5.919 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.279 1.279 22 H -0.290 1.290 23 C 0.165 3.835 24 H 0.089 0.911 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.396 0.604 28 H 0.188 0.812 29 H 0.204 0.796 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.253 0.747 34 H 0.028 0.972 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.173 -0.298 -11.776 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.073 3.927 3 H 0.099 0.901 4 N -0.359 5.359 5 C 0.376 3.624 6 O -0.408 6.408 7 C -0.404 4.404 8 C -0.050 4.050 9 N -0.190 5.190 10 C -0.271 4.271 11 S 0.428 5.572 12 C -0.184 4.184 13 C -0.001 4.001 14 N -0.329 5.329 15 C -0.343 4.343 16 H 0.098 0.902 17 C -0.200 4.200 18 N -0.565 5.565 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.205 1.205 22 H -0.217 1.217 23 C 0.039 3.961 24 H 0.108 0.892 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.230 0.770 28 H 0.205 0.795 29 H 0.221 0.779 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.767 -0.309 -11.600 15.830 hybrid contribution -0.961 0.118 0.181 0.985 sum 9.805 -0.191 -11.420 15.053 Atomic orbital electron populations 1.22169 0.92941 1.03936 1.01439 1.20658 0.95706 0.95340 0.81028 0.90105 1.46114 1.66230 1.13769 1.09829 1.16690 0.77936 0.86158 0.81589 1.90834 1.50688 1.14854 1.84379 1.25999 1.15771 0.97792 1.00855 1.22244 0.95416 1.01180 0.86115 1.66263 1.15275 1.01951 1.35530 1.28799 1.02679 0.97817 0.97777 1.84122 1.56403 1.07161 1.09559 1.23392 0.98524 1.01699 0.94766 1.22346 0.89031 0.95856 0.92817 1.45762 1.04172 1.20636 1.62313 1.18885 0.83533 0.98787 1.33057 0.90175 1.24754 0.98245 0.95262 1.01788 1.69832 1.33868 1.01750 1.51095 0.86181 0.84951 0.77455 0.77705 1.21717 1.20471 1.21658 1.22090 0.89352 0.90595 0.94095 0.89200 0.95088 0.91084 0.76960 0.79492 0.77898 0.91041 0.93937 0.94726 0.93709 0.95423 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.06 37.16 0.30 -2.65 16 2 C 0.18 3.02 2.76 -67.93 -0.19 2.83 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 4 N -0.71 -10.66 5.07 -55.12 -0.28 -10.94 16 5 C 0.59 9.21 7.75 -12.85 -0.10 9.11 16 6 O -0.53 -9.88 16.53 5.20 0.09 -9.80 16 7 C -0.28 -3.55 6.48 -37.09 -0.24 -3.79 16 8 C 0.11 1.32 11.09 -18.85 -0.21 1.11 16 9 N -0.48 -5.43 10.51 -15.38 -0.16 -5.59 16 10 C 0.02 0.21 12.22 51.75 0.63 0.84 16 11 S 0.17 1.59 22.35 -107.50 -2.40 -0.81 16 12 C -0.16 -2.83 4.25 -89.97 -0.38 -3.21 16 13 C 0.13 2.44 7.86 -8.51 -0.07 2.37 16 14 N -0.60 -14.32 2.16 -184.59 -0.40 -14.72 16 15 C -0.22 -5.71 9.57 -15.06 -0.14 -5.85 16 16 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 17 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 18 N -0.92 -26.10 11.81 55.49 0.66 -25.44 16 19 Si 0.91 21.64 29.56 -169.99 -5.02 16.61 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 C 0.16 3.54 6.22 -8.38 -0.05 3.49 16 24 H 0.09 1.98 5.93 -51.93 -0.31 1.67 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.60 6.32 -51.93 -0.33 1.27 16 27 H 0.40 5.23 7.79 -40.82 -0.32 4.91 16 28 H 0.19 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.51 6.17 -51.93 -0.32 1.19 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -31.36 307.80 -7.61 -38.97 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.17 Total: 3.02 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.55 Total: 4.06 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.19 Total: -56.70 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.40 Total: -0.81 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.36 -7.61 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969359626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.603 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds