Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 N 1.46494 * 109.47105 * 239.99349 * 2 1 3 5 5 C 1.34781 * 119.99863 * 85.00356 * 4 2 1 6 6 O 1.21691 * 119.99960 * 359.97438 * 5 4 2 7 7 C 1.46687 * 119.99951 * 179.97438 * 5 4 2 8 8 C 1.35667 * 126.12570 * 180.02562 * 7 5 4 9 9 N 1.30944 * 114.18667 * 180.02562 * 8 7 5 10 10 C 1.29431 * 117.36424 * 359.97438 * 9 8 7 11 11 S 1.70951 * 110.39232 * 359.72841 * 10 9 8 12 12 C 1.53000 * 109.46774 * 119.99801 * 2 1 3 13 13 C 1.53498 * 114.20476 * 299.99885 * 12 2 1 14 14 N 1.47072 * 87.98531 * 87.52370 * 13 12 2 15 15 C 1.36937 * 136.05474 * 207.08946 * 14 13 12 16 16 H 1.07997 * 120.00175 * 6.65345 * 15 14 13 17 17 C 1.38812 * 119.99799 * 186.65772 * 15 14 13 18 18 N 1.31617 * 119.99791 * 6.44001 * 17 15 14 19 19 Si 1.86796 * 120.00183 * 186.44246 * 17 15 14 20 20 H 1.48498 * 109.47075 * 265.01704 * 19 17 15 21 21 H 1.48500 * 109.46850 * 25.01427 * 19 17 15 22 22 H 1.48496 * 109.47374 * 145.01871 * 19 17 15 23 23 C 1.47066 * 87.88224 * 27.34172 * 14 13 12 24 24 H 1.08995 * 109.47689 * 300.00395 * 1 2 3 25 25 H 1.08999 * 109.46965 * 60.00649 * 1 2 3 26 26 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00380 * 264.99872 * 4 2 1 28 28 H 1.07991 * 122.90782 * 0.03209 * 8 7 5 29 29 H 1.07999 * 124.80263 * 180.02562 * 10 9 8 30 30 H 1.08994 * 113.41432 * 166.80325 * 12 2 1 31 31 H 1.09000 * 113.47213 * 332.73897 * 13 12 2 32 32 H 1.09002 * 113.52190 * 202.30784 * 13 12 2 33 33 H 0.97000 * 119.99892 * 179.97438 * 18 17 15 34 34 H 1.09000 * 113.46757 * 87.44265 * 23 14 13 35 35 H 1.08999 * 113.46471 * 217.87772 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8573 1.1622 -2.4119 7 6 2.6366 -0.7099 -3.5546 8 6 2.8137 -0.1574 -4.7809 9 7 3.2629 -0.9912 -5.6852 10 6 3.4800 -2.2118 -5.3133 11 16 3.1073 -2.4049 -3.6562 12 6 2.0399 -0.7212 1.2493 13 6 1.5897 -0.0845 2.5714 14 7 0.3743 -0.9090 2.4946 15 6 -0.9132 -0.8124 2.9511 16 1 -1.2493 0.0949 3.4309 17 6 -1.7861 -1.8807 2.7972 18 7 -1.3448 -3.0289 2.3291 19 14 -3.5870 -1.6886 3.2543 20 1 -3.7999 -2.1730 4.6418 21 1 -3.9701 -0.2566 3.1657 22 1 -4.4227 -2.4834 2.3189 23 6 1.1518 -1.8858 1.7173 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2491 -1.6319 -1.1524 28 1 2.6027 0.8802 -4.9930 29 1 3.8494 -2.9960 -5.9575 30 1 3.1024 -0.9609 1.2077 31 1 1.3944 0.9851 2.4938 32 1 2.2316 -0.3353 3.4159 33 1 -1.9547 -3.7755 2.2219 34 1 1.6788 -2.6121 2.3360 35 1 0.5833 -2.3509 0.9120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969359626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = 56.327902 kcal Electronic energy + Delta-G solvation = -19700.765781 eV Core-core repulsion = 16634.346477 eV Total energy + Delta-G solvation = -3066.419304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43553 -40.65042 -39.66135 -35.96281 -34.18125 -32.32362 -30.69799 -29.58145 -27.11596 -26.42031 -25.88053 -23.86427 -22.30116 -21.20124 -20.33410 -19.58396 -18.65609 -17.67004 -17.23902 -16.87164 -16.54820 -16.34764 -15.71563 -15.57782 -15.08903 -14.96081 -14.77452 -14.49055 -13.96174 -13.54936 -13.05126 -12.93369 -12.77537 -12.61554 -12.55950 -12.39499 -12.10587 -11.67257 -11.51787 -11.40765 -10.92578 -10.78858 -10.69271 -10.64045 -10.16188 -10.03572 -8.78304 -7.87696 -5.15839 -0.77243 0.19015 0.58480 1.41582 1.46094 1.47625 1.55435 1.99834 2.12012 2.50194 3.32047 3.36625 3.55318 3.68773 3.74598 3.92048 4.15869 4.34647 4.36187 4.52944 4.70758 4.82474 4.89969 5.00972 5.03383 5.07102 5.09672 5.27775 5.45097 5.54948 5.62377 5.72942 5.97879 6.37971 6.56042 6.97464 7.04140 7.66282 8.67801 9.31081 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.004213 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.965117 B = 6643.738524 C = 6859.354840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.184 3.816 3 H 0.084 0.916 4 N -0.704 5.704 5 C 0.595 3.405 6 O -0.568 6.568 7 C -0.317 4.317 8 C 0.112 3.888 9 N -0.504 5.504 10 C 0.044 3.956 11 S 0.219 5.781 12 C -0.130 4.130 13 C 0.124 3.876 14 N -0.629 5.629 15 C -0.215 4.215 16 H 0.080 0.920 17 C -0.057 4.057 18 N -0.948 5.948 19 Si 0.962 3.038 20 H -0.290 1.290 21 H -0.271 1.271 22 H -0.297 1.297 23 C 0.164 3.836 24 H 0.068 0.932 25 H 0.025 0.975 26 H 0.042 0.958 27 H 0.407 0.593 28 H 0.184 0.816 29 H 0.247 0.753 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.246 0.754 34 H 0.020 0.980 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.806 -0.759 -12.628 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.102 0.898 4 N -0.354 5.354 5 C 0.381 3.619 6 O -0.449 6.449 7 C -0.442 4.442 8 C -0.046 4.046 9 N -0.217 5.217 10 C -0.250 4.250 11 S 0.474 5.526 12 C -0.150 4.150 13 C -0.002 4.002 14 N -0.356 5.356 15 C -0.343 4.343 16 H 0.097 0.903 17 C -0.250 4.250 18 N -0.597 5.597 19 Si 0.792 3.208 20 H -0.217 1.217 21 H -0.196 1.196 22 H -0.224 1.224 23 C 0.038 3.962 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.243 0.757 28 H 0.201 0.799 29 H 0.263 0.737 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.435 -0.779 -12.442 17.608 hybrid contribution -1.397 0.232 0.379 1.466 sum 11.037 -0.547 -12.063 16.360 Atomic orbital electron populations 1.21941 0.95323 1.01513 1.00093 1.20405 0.93577 0.95882 0.82081 0.89763 1.45927 1.66081 1.14189 1.09223 1.17001 0.76976 0.85764 0.82171 1.90804 1.52398 1.16609 1.85082 1.25702 1.18393 1.00289 0.99796 1.22313 0.94641 1.01462 0.86217 1.66339 1.16857 1.02999 1.35530 1.29581 0.99686 0.97656 0.98045 1.83971 1.55218 1.03837 1.09567 1.23144 0.99751 0.98474 0.93622 1.22537 0.87348 0.95975 0.94310 1.46022 1.04692 1.22223 1.62619 1.19154 0.85210 0.98444 1.31488 0.90259 1.25385 1.01472 0.95318 1.02873 1.69972 1.34511 1.02213 1.52994 0.85299 0.81089 0.77485 0.76961 1.21723 1.19603 1.22407 1.22058 0.89592 0.91389 0.93162 0.91318 0.95549 0.93882 0.75749 0.79917 0.73726 0.87132 0.93046 0.93110 0.94487 0.96249 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.06 71.98 0.58 -4.74 16 2 C 0.18 6.17 2.76 44.99 0.12 6.29 16 3 H 0.08 2.86 7.58 -2.39 -0.02 2.84 16 4 N -0.70 -20.37 5.07 -446.50 -2.27 -22.64 16 5 C 0.59 18.14 7.75 86.45 0.67 18.81 16 6 O -0.57 -21.30 16.53 -4.32 -0.07 -21.37 16 7 C -0.32 -7.67 6.48 23.88 0.15 -7.51 16 8 C 0.11 2.64 11.09 84.23 0.93 3.57 16 9 N -0.50 -10.38 10.51 -202.57 -2.13 -12.51 16 10 C 0.04 0.60 12.22 130.60 1.60 2.19 16 11 S 0.22 3.42 22.35 -56.49 -1.26 2.15 16 12 C -0.13 -4.24 4.25 -10.37 -0.04 -4.28 16 13 C 0.12 4.57 7.86 83.18 0.65 5.23 16 14 N -0.63 -29.82 2.16 -737.93 -1.60 -31.42 16 15 C -0.21 -11.47 9.57 84.03 0.80 -10.66 16 16 H 0.08 4.13 7.84 -2.91 -0.02 4.11 16 17 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 18 N -0.95 -55.00 11.81 21.65 0.26 -54.75 16 19 Si 0.96 45.15 29.56 68.60 2.03 47.18 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 C 0.16 7.00 6.22 83.26 0.52 7.52 16 24 H 0.07 3.07 5.93 -2.39 -0.01 3.05 16 25 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 1.98 6.32 -2.38 -0.02 1.97 16 27 H 0.41 10.06 7.79 -92.70 -0.72 9.34 16 28 H 0.18 4.24 8.06 -2.92 -0.02 4.21 16 29 H 0.25 1.02 8.06 -2.91 -0.02 1.00 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 1.92 6.17 -2.39 -0.01 1.90 16 Total: -1.00 -69.18 307.80 1.82 -67.36 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.40 Total: 12.24 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.46 Total: 13.75 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -5.74 Total: -121.32 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.26 Total: 2.15 kcal Total: -69.18 1.82 -67.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969359626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.691 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds