Wall clock time and date at job start Wed Apr 15 2020 11:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47444 * 2 1 4 4 N 1.46506 * 109.46954 * 120.00170 * 2 1 3 5 5 C 1.34781 * 119.99483 * 274.99713 * 4 2 1 6 6 O 1.21629 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.47261 * 119.99579 * 180.02562 * 5 4 2 8 8 C 1.35210 * 123.14110 * 179.73561 * 7 5 4 9 9 S 1.70941 * 108.82762 * 179.90183 * 8 7 5 10 10 C 1.70770 * 91.12869 * 0.29780 * 9 8 7 11 11 N 1.28644 * 110.55949 * 359.82246 * 10 9 8 12 12 C 1.53005 * 109.46986 * 239.99852 * 2 1 3 13 13 C 1.53493 * 114.20333 * 175.68350 * 12 2 1 14 14 N 1.47068 * 87.98247 * 220.34227 * 13 12 2 15 15 C 1.36939 * 136.05828 * 207.07791 * 14 13 12 16 16 H 1.08009 * 119.99828 * 7.52211 * 15 14 13 17 17 C 1.38813 * 120.00039 * 187.51422 * 15 14 13 18 18 N 1.31617 * 119.99817 * 174.40609 * 17 15 14 19 19 Si 1.86797 * 120.00119 * 354.40216 * 17 15 14 20 20 H 1.48497 * 109.47380 * 174.95493 * 19 17 15 21 21 H 1.48500 * 109.47407 * 294.96137 * 19 17 15 22 22 H 1.48510 * 109.46672 * 54.95765 * 19 17 15 23 23 C 1.47063 * 87.88230 * 27.34587 * 14 13 12 24 24 H 1.09006 * 109.46878 * 304.63989 * 1 2 3 25 25 H 1.08999 * 109.46928 * 64.63574 * 1 2 3 26 26 H 1.08995 * 109.47282 * 184.64014 * 1 2 3 27 27 H 0.96995 * 120.00344 * 94.99757 * 4 2 1 28 28 H 1.07999 * 125.58795 * 0.02562 * 8 7 5 29 29 H 1.08001 * 124.71665 * 179.82536 * 10 9 8 30 30 H 1.08999 * 113.41352 * 308.87752 * 12 2 1 31 31 H 1.09006 * 113.46896 * 105.56573 * 13 12 2 32 32 H 1.09001 * 113.52744 * 335.13074 * 13 12 2 33 33 H 0.97005 * 120.00278 * 355.00769 * 18 17 15 34 34 H 1.08996 * 113.47209 * 87.43719 * 23 14 13 35 35 H 1.09002 * 113.46065 * 217.87613 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8574 1.1618 2.4118 7 6 2.6384 -0.7123 3.5594 8 6 2.7967 -0.0992 4.7541 9 16 3.3798 -1.2395 5.8863 10 6 3.3869 -2.4660 4.6982 11 7 2.9745 -2.0049 3.5703 12 6 2.0400 -0.7213 -1.2493 13 6 3.5659 -0.6941 -1.4128 14 7 3.3557 -0.4732 -2.8515 15 6 4.0528 -0.7332 -4.0012 16 1 4.9535 -1.3281 -3.9638 17 6 3.6017 -0.2323 -5.2147 18 7 4.3277 -0.3878 -6.3015 19 14 1.9644 0.6623 -5.3052 20 1 1.7700 1.2016 -6.6751 21 1 0.8652 -0.2834 -4.9849 22 1 1.9565 1.7801 -4.3275 23 6 2.0706 0.1558 -2.5117 24 1 -0.3633 0.5842 0.8456 25 1 -0.3633 0.4402 -0.9286 26 1 -0.3633 -1.0242 0.0831 27 1 2.2490 -1.6318 1.1527 28 1 2.5871 0.9401 4.9598 29 1 3.6948 -3.4869 4.8699 30 1 1.5924 -1.7045 -1.3948 31 1 4.0440 -1.6469 -1.1852 32 1 4.0425 0.1472 -0.9096 33 1 5.2096 -0.7875 -6.2426 34 1 2.1519 1.2215 -2.2979 35 1 1.2746 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969369176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:09 Heat of formation + Delta-G solvation = 42.995361 kcal Electronic energy + Delta-G solvation = -19412.643655 eV Core-core repulsion = 16345.646208 eV Total energy + Delta-G solvation = -3066.997447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.62854 -40.58977 -39.43048 -36.36754 -34.53431 -32.29229 -31.41301 -29.61578 -27.24638 -26.72380 -25.46353 -23.88462 -22.23105 -21.35253 -20.63582 -19.85447 -19.56009 -17.83392 -17.43525 -16.93905 -16.58815 -16.33365 -15.89370 -15.52695 -15.16788 -15.05306 -14.78314 -14.43051 -14.28599 -13.70389 -13.37297 -13.16564 -13.13487 -12.90520 -12.62943 -12.37083 -12.04706 -11.71748 -11.39712 -11.23833 -11.09346 -10.86183 -10.82093 -10.71582 -10.23612 -9.88201 -9.26074 -8.64744 -5.51027 -0.45209 0.34436 0.65885 0.95725 1.38430 1.49266 1.67862 2.13093 2.31153 2.53813 2.94309 3.13008 3.16422 3.51729 3.79774 3.99120 4.14323 4.18780 4.26230 4.37975 4.44931 4.54735 4.61404 4.71162 4.74226 4.82910 4.87682 5.01699 5.15347 5.26568 5.39137 5.46732 5.91956 6.29057 6.61819 6.66849 7.11539 7.29179 8.24297 8.86929 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.003655 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.961171 B = 7659.189332 C = 8142.999809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.073 0.927 4 N -0.695 5.695 5 C 0.588 3.412 6 O -0.573 6.573 7 C -0.021 4.021 8 C -0.240 4.240 9 S 0.296 5.704 10 C -0.006 4.006 11 N -0.471 5.471 12 C -0.105 4.105 13 C 0.127 3.873 14 N -0.661 5.661 15 C -0.295 4.295 16 H 0.049 0.951 17 C -0.085 4.085 18 N -0.970 5.970 19 Si 1.107 2.893 20 H -0.304 1.304 21 H -0.263 1.263 22 H -0.262 1.262 23 C 0.100 3.900 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.415 0.585 28 H 0.190 0.810 29 H 0.239 0.761 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.246 0.754 34 H 0.053 0.947 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -4.019 29.764 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.092 0.908 4 N -0.345 5.345 5 C 0.373 3.627 6 O -0.453 6.453 7 C -0.156 4.156 8 C -0.383 4.383 9 S 0.551 5.449 10 C -0.305 4.305 11 N -0.186 5.186 12 C -0.125 4.125 13 C 0.001 3.999 14 N -0.389 5.389 15 C -0.423 4.423 16 H 0.067 0.933 17 C -0.277 4.277 18 N -0.615 5.615 19 Si 0.932 3.068 20 H -0.232 1.232 21 H -0.189 1.189 22 H -0.187 1.187 23 C -0.025 4.025 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.252 0.748 28 H 0.207 0.793 29 H 0.255 0.745 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.757 -2.912 29.109 30.265 hybrid contribution 1.690 -0.663 -0.418 1.863 sum -6.067 -3.575 28.690 29.542 Atomic orbital electron populations 1.22090 0.93208 1.03137 1.02787 1.20878 0.95381 0.96168 0.82259 0.90839 1.45809 1.65312 1.14836 1.08496 1.17446 0.76992 0.85471 0.82752 1.90780 1.52775 1.16386 1.85402 1.20330 1.09295 0.90660 0.95355 1.26922 1.05648 1.08254 0.97504 1.82650 1.53675 0.96908 1.11626 1.29114 1.02819 1.07385 0.91175 1.66943 1.13593 1.10552 1.27531 1.23273 0.95922 1.00431 0.92842 1.22463 0.95224 0.98659 0.83512 1.46092 1.21054 1.70000 1.01785 1.20047 1.07347 1.29141 0.85735 0.93328 1.27151 1.08725 1.00886 0.90894 1.71023 1.12000 1.48784 1.29683 0.83312 0.72083 0.76495 0.74895 1.23178 1.18912 1.18711 1.22944 0.88464 0.96493 0.94577 0.92711 0.90386 0.90886 0.74792 0.79274 0.74473 0.86514 0.93289 0.94555 0.94534 0.92981 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.48 71.98 0.68 -2.96 16 2 C 0.16 4.44 2.35 44.99 0.11 4.55 16 3 H 0.07 2.37 7.41 -2.39 -0.02 2.35 16 4 N -0.69 -18.29 4.94 -445.93 -2.20 -20.50 16 5 C 0.59 16.83 7.76 86.61 0.67 17.50 16 6 O -0.57 -19.68 16.37 -4.12 -0.07 -19.75 16 7 C -0.02 -0.49 6.70 40.56 0.27 -0.22 16 8 C -0.24 -4.18 10.62 67.12 0.71 -3.47 16 9 S 0.30 2.53 22.97 -56.49 -1.30 1.23 16 10 C -0.01 -0.07 12.17 130.71 1.59 1.52 16 11 N -0.47 -9.31 10.12 -193.03 -1.95 -11.26 16 12 C -0.10 -3.38 3.52 -10.37 -0.04 -3.41 16 13 C 0.13 5.02 8.12 83.17 0.68 5.70 16 14 N -0.66 -33.03 3.69 -738.05 -2.72 -35.75 16 15 C -0.30 -17.83 11.08 84.03 0.93 -16.90 16 16 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 17 C -0.09 -5.23 5.50 84.86 0.47 -4.77 16 18 N -0.97 -64.31 13.70 21.65 0.30 -64.01 16 19 Si 1.11 54.28 25.16 68.60 1.73 56.00 16 20 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 21 H -0.26 -11.57 6.51 99.48 0.65 -10.92 16 22 H -0.26 -11.68 6.21 99.48 0.62 -11.06 16 23 C 0.10 4.06 5.27 83.26 0.44 4.50 16 24 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.42 9.89 8.12 -92.71 -0.75 9.13 16 28 H 0.19 3.13 8.03 -2.91 -0.02 3.11 16 29 H 0.24 0.74 8.06 -2.91 -0.02 0.72 16 30 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 32 H 0.04 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.25 16.36 8.73 -92.70 -0.81 15.55 16 34 H 0.05 2.08 7.50 -2.39 -0.02 2.07 16 35 H 0.06 2.34 4.72 -2.39 -0.01 2.32 16 Total: -1.00 -79.31 308.80 0.47 -78.84 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.18 Total: 13.14 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.51 Total: 2.04 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -6.58 Total: -131.52 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.07 Total: -19.75 kcal Atomic # 14 Polarization: 54.28 SS G_CDS: 1.73 Total: 56.00 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.30 Total: 1.23 kcal Total: -79.31 0.47 -78.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969369176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.836 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds