Wall clock time and date at job start Wed Apr 15 2020 11:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47015 * 2 1 4 4 N 1.46504 * 109.46987 * 240.00279 * 2 1 3 5 5 C 1.34774 * 120.00193 * 84.99932 * 4 2 1 6 6 O 1.21634 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.47099 * 120.00126 * 180.27529 * 5 4 2 8 8 C 1.38390 * 127.99712 * 179.42751 * 7 5 4 9 9 C 1.37577 * 111.25844 * 179.88357 * 8 7 5 10 10 N 1.29557 * 117.95313 * 0.43768 * 9 8 7 11 11 S 1.56303 * 110.37911 * 359.74714 * 10 9 8 12 12 C 1.52999 * 109.47342 * 120.00095 * 2 1 3 13 13 C 1.53942 * 113.74138 * 281.82235 * 12 2 1 14 14 N 1.47809 * 86.03725 * 222.08246 * 13 12 2 15 15 C 1.36934 * 134.45442 * 204.64041 * 14 13 12 16 16 H 1.08005 * 119.99323 * 179.86655 * 15 14 13 17 17 C 1.38808 * 120.00187 * 359.87381 * 15 14 13 18 18 N 1.31620 * 120.00271 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46653 * 59.99686 * 19 17 15 21 21 H 1.48499 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47136 * 299.99962 * 19 17 15 23 23 C 1.47578 * 91.04733 * 24.54955 * 14 13 12 24 24 H 1.08993 * 109.46708 * 300.07195 * 1 2 3 25 25 H 1.08999 * 109.46960 * 60.07724 * 1 2 3 26 26 H 1.09002 * 109.46331 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99753 * 264.99673 * 4 2 1 28 28 H 1.07998 * 124.37206 * 0.03323 * 8 7 5 29 29 H 1.08002 * 121.02360 * 180.18482 * 9 8 7 30 30 H 1.08998 * 112.94255 * 53.41155 * 12 2 1 31 31 H 1.08999 * 113.76851 * 336.35082 * 13 12 2 32 32 H 1.09001 * 113.76946 * 107.74443 * 13 12 2 33 33 H 0.96996 * 120.00033 * 180.02562 * 18 17 15 34 34 H 1.09002 * 113.76739 * 221.14709 * 23 14 13 35 35 H 1.09008 * 113.86976 * 89.77146 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8574 1.1618 -2.4118 7 6 2.6316 -0.7131 -3.5598 8 6 2.8149 -0.1925 -4.8289 9 6 3.2867 -1.1495 -5.6973 10 7 3.4768 -2.3458 -5.2377 11 16 3.1081 -2.4109 -3.7202 12 6 2.0401 -0.7213 1.2492 13 6 1.9745 0.1329 2.5282 14 7 3.3099 -0.4179 2.8416 15 6 4.0195 -0.6143 3.9961 16 1 5.0067 -1.0504 3.9555 17 6 3.4699 -0.2532 5.2185 18 7 2.2669 0.2786 5.2679 19 14 4.4376 -0.5219 6.7937 20 1 5.7080 0.2446 6.7309 21 1 3.6355 -0.0557 7.9531 22 1 4.7390 -1.9677 6.9489 23 6 3.5701 -0.6729 1.4115 24 1 -0.3632 0.5149 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 -0.3632 -1.0277 0.0005 27 1 2.2491 -1.6317 -1.1527 28 1 2.6157 0.8333 -5.1017 29 1 3.4884 -0.9120 -6.7314 30 1 1.6177 -1.7193 1.3659 31 1 1.9752 1.2065 2.3400 32 1 1.1955 -0.1777 3.2245 33 1 1.8830 0.5313 6.1221 34 1 4.0628 -1.6258 1.2177 35 1 4.0409 0.1624 0.8929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969781775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:28 Heat of formation + Delta-G solvation = 61.663888 kcal Electronic energy + Delta-G solvation = -19236.057064 eV Core-core repulsion = 16169.869145 eV Total energy + Delta-G solvation = -3066.187919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.08752 -39.20081 -37.98153 -34.89943 -32.36191 -31.82655 -30.38187 -27.50181 -26.35307 -24.78865 -24.07255 -22.55630 -20.84964 -20.35609 -19.32268 -18.45447 -17.16457 -16.73241 -16.04897 -15.41790 -15.20589 -14.79935 -14.44533 -14.05226 -13.90044 -13.62207 -13.54546 -13.18086 -12.36152 -12.11382 -11.69141 -11.58091 -11.39952 -11.25414 -11.04033 -10.88917 -10.70685 -10.39453 -10.24076 -9.95434 -9.85569 -9.79309 -9.44968 -9.13928 -8.96292 -8.79754 -6.88623 -5.77384 -3.09557 0.05590 1.02104 1.60110 1.96654 3.01757 3.03470 3.39510 3.43654 3.44880 4.44339 4.47908 4.70878 4.85463 5.08509 5.13909 5.36239 5.39221 5.51191 5.54930 5.60445 5.77663 5.94238 6.02570 6.18253 6.23247 6.32878 6.41178 6.49653 6.59911 6.73847 7.20742 7.34069 7.43556 7.54770 7.97468 8.08863 9.04096 9.70402 10.59119 11.39820 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.003564 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.333576 B = 7854.308581 C = 8364.899283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.091 0.909 4 N -0.710 5.710 5 C 0.593 3.407 6 O -0.525 6.525 7 C -0.261 4.261 8 C -0.115 4.115 9 C 0.057 3.943 10 N -0.522 5.522 11 S 0.420 5.580 12 C -0.149 4.149 13 C 0.176 3.824 14 N -0.612 5.612 15 C -0.225 4.225 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.124 3.876 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.397 0.603 28 H 0.175 0.825 29 H 0.183 0.817 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.041 0.959 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 -4.264 -19.327 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.109 0.891 4 N -0.360 5.360 5 C 0.377 3.623 6 O -0.402 6.402 7 C -0.395 4.395 8 C -0.150 4.150 9 C -0.135 4.135 10 N -0.352 5.352 11 S 0.574 5.426 12 C -0.169 4.169 13 C 0.050 3.950 14 N -0.338 5.338 15 C -0.352 4.352 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.002 4.002 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.231 0.769 28 H 0.193 0.807 29 H 0.200 0.800 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.763 -5.516 -18.581 19.462 hybrid contribution 0.467 1.303 0.103 1.388 sum -1.296 -4.213 -18.477 18.996 Atomic orbital electron populations 1.22122 0.95099 1.01998 1.02492 1.21225 0.94032 0.97561 0.82513 0.89066 1.46043 1.66467 1.13867 1.09603 1.16740 0.77910 0.86075 0.81563 1.90828 1.50025 1.14853 1.84480 1.27010 1.11235 1.02059 0.99242 1.22134 0.99698 1.02599 0.90594 1.22293 1.01273 0.86790 1.03131 1.72220 1.24514 1.26327 1.12107 1.81739 1.50710 1.05877 1.04230 1.23894 0.97679 1.00892 0.94403 1.22231 0.89676 0.93887 0.89160 1.45964 1.16318 1.71882 0.99601 1.18978 0.98478 1.34960 0.82816 0.90342 1.24773 0.97055 1.01059 0.97477 1.69791 1.15357 1.47177 1.24534 0.86206 0.78896 0.77842 0.82846 1.21210 1.21537 1.21078 1.22549 0.92987 0.97763 0.86916 0.90788 0.92721 0.92593 0.76874 0.80745 0.80028 0.89133 0.95346 0.90605 0.93559 0.94052 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.44 37.16 0.35 -1.76 16 2 C 0.15 2.22 2.29 -67.93 -0.16 2.06 16 3 H 0.09 1.55 7.48 -51.93 -0.39 1.16 16 4 N -0.71 -8.92 4.94 -54.98 -0.27 -9.20 16 5 C 0.59 8.04 7.77 -12.67 -0.10 7.94 16 6 O -0.52 -8.88 16.62 5.25 0.09 -8.79 16 7 C -0.26 -2.87 6.76 -35.93 -0.24 -3.11 16 8 C -0.11 -1.08 10.40 -39.77 -0.41 -1.49 16 9 C 0.06 0.49 11.14 -18.75 -0.21 0.28 16 10 N -0.52 -5.36 11.29 21.63 0.24 -5.12 16 11 S 0.42 3.88 22.81 -107.50 -2.45 1.43 16 12 C -0.15 -2.56 3.35 -89.70 -0.30 -2.86 16 13 C 0.18 3.98 6.98 -2.84 -0.02 3.96 16 14 N -0.61 -15.45 3.70 -177.72 -0.66 -16.10 16 15 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 16 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -27.03 11.39 55.49 0.63 -26.40 16 19 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.12 2.44 8.37 -2.97 -0.02 2.41 16 24 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.40 4.10 7.98 -40.82 -0.33 3.78 16 28 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 32 H 0.08 1.89 7.17 -51.93 -0.37 1.51 16 33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.64 8.10 -51.92 -0.42 0.22 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -33.03 316.01 -8.48 -41.50 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.43 Total: 0.22 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.37 Total: 0.71 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.05 Total: -56.82 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.45 Total: 1.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.03 -8.48 -41.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969781775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.168 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds