Wall clock time and date at job start Wed Apr 15 2020 11:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47015 * 2 1 4 4 N 1.46504 * 109.46987 * 240.00279 * 2 1 3 5 5 C 1.34774 * 120.00193 * 84.99932 * 4 2 1 6 6 O 1.21634 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.47099 * 120.00126 * 180.27529 * 5 4 2 8 8 C 1.38390 * 127.99712 * 179.42751 * 7 5 4 9 9 C 1.37577 * 111.25844 * 179.88357 * 8 7 5 10 10 N 1.29557 * 117.95313 * 0.43768 * 9 8 7 11 11 S 1.56303 * 110.37911 * 359.74714 * 10 9 8 12 12 C 1.52999 * 109.47342 * 120.00095 * 2 1 3 13 13 C 1.53942 * 113.74138 * 281.82235 * 12 2 1 14 14 N 1.47809 * 86.03725 * 222.08246 * 13 12 2 15 15 C 1.36934 * 134.45442 * 204.64041 * 14 13 12 16 16 H 1.08005 * 119.99323 * 179.86655 * 15 14 13 17 17 C 1.38808 * 120.00187 * 359.87381 * 15 14 13 18 18 N 1.31620 * 120.00271 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46653 * 59.99686 * 19 17 15 21 21 H 1.48499 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47136 * 299.99962 * 19 17 15 23 23 C 1.47578 * 91.04733 * 24.54955 * 14 13 12 24 24 H 1.08993 * 109.46708 * 300.07195 * 1 2 3 25 25 H 1.08999 * 109.46960 * 60.07724 * 1 2 3 26 26 H 1.09002 * 109.46331 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99753 * 264.99673 * 4 2 1 28 28 H 1.07998 * 124.37206 * 0.03323 * 8 7 5 29 29 H 1.08002 * 121.02360 * 180.18482 * 9 8 7 30 30 H 1.08998 * 112.94255 * 53.41155 * 12 2 1 31 31 H 1.08999 * 113.76851 * 336.35082 * 13 12 2 32 32 H 1.09001 * 113.76946 * 107.74443 * 13 12 2 33 33 H 0.96996 * 120.00033 * 180.02562 * 18 17 15 34 34 H 1.09002 * 113.76739 * 221.14709 * 23 14 13 35 35 H 1.09008 * 113.86976 * 89.77146 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8574 1.1618 -2.4118 7 6 2.6316 -0.7131 -3.5598 8 6 2.8149 -0.1925 -4.8289 9 6 3.2867 -1.1495 -5.6973 10 7 3.4768 -2.3458 -5.2377 11 16 3.1081 -2.4109 -3.7202 12 6 2.0401 -0.7213 1.2492 13 6 1.9745 0.1329 2.5282 14 7 3.3099 -0.4179 2.8416 15 6 4.0195 -0.6143 3.9961 16 1 5.0067 -1.0504 3.9555 17 6 3.4699 -0.2532 5.2185 18 7 2.2669 0.2786 5.2679 19 14 4.4376 -0.5219 6.7937 20 1 5.7080 0.2446 6.7309 21 1 3.6355 -0.0557 7.9531 22 1 4.7390 -1.9677 6.9489 23 6 3.5701 -0.6729 1.4115 24 1 -0.3632 0.5149 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 -0.3632 -1.0277 0.0005 27 1 2.2491 -1.6317 -1.1527 28 1 2.6157 0.8333 -5.1017 29 1 3.4884 -0.9120 -6.7314 30 1 1.6177 -1.7193 1.3659 31 1 1.9752 1.2065 2.3400 32 1 1.1955 -0.1777 3.2245 33 1 1.8830 0.5313 6.1221 34 1 4.0628 -1.6258 1.2177 35 1 4.0409 0.1624 0.8929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969781775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:26 Heat of formation + Delta-G solvation = 38.867258 kcal Electronic energy + Delta-G solvation = -19237.045600 eV Core-core repulsion = 16169.869145 eV Total energy + Delta-G solvation = -3067.176455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.17373 -40.14880 -39.42077 -36.23814 -34.17365 -32.91762 -31.53524 -29.32424 -27.25881 -26.41464 -25.66167 -23.72689 -22.15068 -21.43557 -20.59017 -19.47945 -18.77388 -17.94636 -17.24247 -16.80216 -16.41010 -16.15975 -15.80721 -15.32604 -15.16371 -14.82211 -14.66750 -14.26345 -14.02926 -13.40285 -13.25273 -13.07116 -12.94579 -12.65426 -12.47641 -12.33392 -12.03538 -11.79386 -11.73127 -11.58163 -11.24587 -11.10603 -10.84421 -10.78204 -10.14766 -9.78908 -8.90589 -7.89253 -5.22539 -0.73768 0.26836 0.89724 1.24385 1.46597 1.49790 1.55919 1.96900 2.04514 2.48672 3.30962 3.39637 3.55778 3.79701 3.96269 4.04433 4.12502 4.27103 4.45046 4.58792 4.75080 4.78444 4.82933 4.87929 4.90327 4.96826 5.08179 5.26663 5.32742 5.43699 5.51151 5.55939 5.66297 5.95725 6.41843 6.93510 7.06246 7.62272 8.57824 9.27486 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.003564 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.333576 B = 7854.308581 C = 8364.899283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.068 0.932 4 N -0.701 5.701 5 C 0.596 3.404 6 O -0.565 6.565 7 C -0.289 4.289 8 C -0.107 4.107 9 C 0.063 3.937 10 N -0.543 5.543 11 S 0.450 5.550 12 C -0.111 4.111 13 C 0.171 3.829 14 N -0.644 5.644 15 C -0.239 4.239 16 H 0.083 0.917 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.978 3.022 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.125 3.875 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.411 0.589 28 H 0.185 0.815 29 H 0.215 0.785 30 H 0.108 0.892 31 H 0.013 0.987 32 H 0.048 0.952 33 H 0.249 0.751 34 H 0.063 0.937 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -5.694 -20.972 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.057 3.943 3 H 0.086 0.914 4 N -0.352 5.352 5 C 0.382 3.618 6 O -0.445 6.445 7 C -0.422 4.422 8 C -0.143 4.143 9 C -0.129 4.129 10 N -0.373 5.373 11 S 0.606 5.394 12 C -0.130 4.130 13 C 0.045 3.955 14 N -0.370 5.370 15 C -0.367 4.367 16 H 0.101 0.899 17 C -0.259 4.259 18 N -0.601 5.601 19 Si 0.806 3.194 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.199 1.199 23 C 0.000 4.000 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.247 0.753 28 H 0.203 0.797 29 H 0.231 0.769 30 H 0.127 0.873 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.121 -6.996 -20.257 21.461 hybrid contribution 0.317 1.740 0.507 1.840 sum -0.804 -5.256 -19.750 20.453 Atomic orbital electron populations 1.22062 0.93664 1.03218 1.02184 1.20868 0.95013 0.96074 0.82315 0.91425 1.45828 1.66219 1.14386 1.08747 1.16991 0.77031 0.85599 0.82163 1.90809 1.51840 1.16624 1.85183 1.26804 1.13163 1.03491 0.98768 1.22403 0.98497 1.03330 0.90081 1.22669 1.00012 0.85827 1.04350 1.72231 1.25132 1.27199 1.12749 1.81573 1.49980 1.04107 1.03774 1.23487 0.96034 1.00572 0.92955 1.22139 0.88205 0.93774 0.91373 1.46395 1.17326 1.72151 1.01135 1.19399 0.98836 1.34235 0.84219 0.89933 1.25612 0.98131 1.01534 1.00616 1.69982 1.16852 1.48585 1.24698 0.85166 0.77425 0.78111 0.78703 1.20674 1.22042 1.19937 1.22707 0.94845 0.98572 0.83886 0.91471 0.92691 0.90586 0.75281 0.79742 0.76882 0.87349 0.96922 0.93375 0.94225 0.91894 0.94948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.44 71.98 0.68 -3.23 16 2 C 0.16 4.65 2.29 44.99 0.10 4.75 16 3 H 0.07 2.32 7.48 -2.39 -0.02 2.30 16 4 N -0.70 -16.53 4.94 -446.11 -2.20 -18.73 16 5 C 0.60 15.50 7.77 86.57 0.67 16.18 16 6 O -0.56 -18.96 16.62 -4.14 -0.07 -19.03 16 7 C -0.29 -5.81 6.76 24.63 0.17 -5.65 16 8 C -0.11 -1.77 10.40 22.15 0.23 -1.54 16 9 C 0.06 0.89 11.14 84.87 0.95 1.84 16 10 N -0.54 -9.73 11.29 -85.49 -0.97 -10.69 16 11 S 0.45 7.28 22.81 -56.49 -1.29 5.99 16 12 C -0.11 -3.71 3.35 -10.14 -0.03 -3.74 16 13 C 0.17 7.90 6.98 86.44 0.60 8.51 16 14 N -0.64 -32.67 3.70 -716.19 -2.65 -35.33 16 15 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 18 N -0.95 -57.25 11.39 21.65 0.25 -57.00 16 19 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.12 4.78 8.37 86.48 0.72 5.50 16 24 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.41 7.49 7.98 -92.71 -0.74 6.75 16 28 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.01 0.63 8.03 -2.39 -0.02 0.61 16 32 H 0.05 2.48 7.17 -2.39 -0.02 2.46 16 33 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.03 1.27 8.10 -2.38 -0.02 1.25 16 Total: -1.00 -71.99 316.01 0.92 -71.07 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.37 Total: 9.26 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 5.46 Total: 6.86 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -5.58 Total: -121.76 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.07 Total: -19.03 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 7.28 SS G_CDS: -1.29 Total: 5.99 kcal Total: -71.99 0.92 -71.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969781775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.933 kcal (2) G-P(sol) polarization free energy of solvation -71.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds