Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34999 * 127.27570 * 2 1 4 4 C 1.39484 * 111.68152 * 180.15375 * 3 2 1 5 5 C 1.47695 * 122.10061 * 179.82219 * 4 3 2 6 6 O 1.21578 * 120.00016 * 353.57068 * 5 4 3 7 7 N 1.34771 * 119.99966 * 173.29632 * 5 4 3 8 8 C 1.46500 * 120.00145 * 354.65153 * 7 5 4 9 9 C 1.46503 * 120.00266 * 174.64522 * 7 5 4 10 10 C 1.53946 * 113.74455 * 218.74312 * 9 7 5 11 11 N 1.47816 * 86.03355 * 222.08525 * 10 9 7 12 12 C 1.36935 * 134.45360 * 204.64126 * 11 10 9 13 13 H 1.07999 * 120.00051 * 179.86467 * 12 11 10 14 14 C 1.38813 * 120.00074 * 359.87181 * 12 11 10 15 15 N 1.31618 * 119.99998 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00015 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47249 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47104 * 119.99796 * 16 14 12 19 19 H 1.48501 * 109.47202 * 239.99887 * 16 14 12 20 20 C 1.47576 * 91.05357 * 24.55158 * 11 10 9 21 21 N 1.30601 * 115.79271 * 359.55176 * 4 3 2 22 22 S 1.56141 * 109.80064 * 0.24730 * 21 4 3 23 23 H 1.08995 * 109.47421 * 180.31464 * 1 2 3 24 24 H 1.08995 * 109.47708 * 300.32170 * 1 2 3 25 25 H 1.09007 * 109.46720 * 60.31990 * 1 2 3 26 26 H 1.08002 * 124.15726 * 359.95001 * 3 2 1 27 27 H 1.08997 * 109.47701 * 85.14733 * 8 7 5 28 28 H 1.08998 * 109.47381 * 205.15253 * 8 7 5 29 29 H 1.09006 * 109.46860 * 325.14959 * 8 7 5 30 30 H 1.08994 * 112.94287 * 350.34031 * 9 7 5 31 31 H 1.08997 * 113.76645 * 336.35070 * 10 9 7 32 32 H 1.08998 * 113.76802 * 107.75032 * 10 9 7 33 33 H 0.97004 * 120.00095 * 179.97438 * 15 14 12 34 34 H 1.09002 * 113.76854 * 221.14976 * 20 11 10 35 35 H 1.08995 * 113.77523 * 89.75259 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6681 0.6993 -0.0035 5 6 4.7604 1.6934 -0.0081 6 8 4.5054 2.8762 -0.1268 7 7 6.0394 1.2898 0.1249 8 6 6.3390 -0.1193 0.3912 9 6 7.1302 2.2602 0.0031 10 6 8.3648 1.7152 -0.7376 11 7 9.1628 2.3990 0.3020 12 6 10.4388 2.8923 0.3617 13 1 10.7935 3.3643 1.2660 14 6 11.2763 2.7859 -0.7402 15 7 10.8442 2.2104 -1.8422 16 14 13.0167 3.4596 -0.6590 17 1 13.2559 4.0530 0.6810 18 1 13.9852 2.3582 -0.8921 19 1 13.1930 4.5025 -1.7014 20 6 8.0320 2.3385 1.2483 21 7 3.8994 -0.5861 0.0031 22 16 2.5472 -1.3668 0.0071 23 1 -0.3634 -1.0276 0.0056 24 1 -0.3634 0.5188 0.8870 25 1 -0.3633 0.5089 -0.8929 26 1 1.9807 2.0980 -0.0008 27 1 6.3762 -0.6671 -0.5504 28 1 7.3024 -0.1970 0.8951 29 1 5.5612 -0.5422 1.0271 30 1 6.7955 3.2326 -0.3581 31 1 8.4484 0.6288 -0.7119 32 1 8.4959 2.1297 -1.7371 33 1 11.4293 2.1364 -2.6123 34 1 7.8979 3.2496 1.8314 35 1 8.0176 1.4355 1.8586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042661269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = 81.009446 kcal Electronic energy + Delta-G solvation = -19494.644488 eV Core-core repulsion = 16429.295456 eV Total energy + Delta-G solvation = -3065.349032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55660 -38.75057 -37.30285 -34.61482 -33.28296 -31.90558 -28.43040 -27.86398 -26.64236 -25.63489 -24.80357 -22.88691 -20.84527 -19.72199 -18.58753 -18.45403 -16.83663 -16.61568 -15.98794 -15.75296 -14.87642 -14.48652 -14.38324 -13.80481 -13.69796 -13.29694 -13.23222 -12.99983 -12.78305 -12.38219 -12.17410 -11.81334 -11.52634 -11.29561 -11.22249 -10.88584 -10.73545 -10.66770 -10.24748 -10.04294 -9.64597 -9.58712 -9.53163 -8.92624 -8.80688 -8.10588 -6.90958 -5.78426 -3.11349 0.46145 1.26276 1.71092 1.73537 3.25913 3.36394 3.39909 3.45015 3.47397 4.36380 4.47634 4.70021 4.94278 5.02592 5.16667 5.20414 5.44984 5.47877 5.52864 5.60460 5.63059 5.70477 5.95802 6.01783 6.10118 6.23958 6.29523 6.46179 6.58895 6.81478 7.20132 7.33816 7.51670 7.72933 7.95144 8.35356 9.02436 9.68591 10.55497 11.38857 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.049712 B = 0.003495 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.110705 B = 8008.522103 C = 8236.110604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.247 4.247 3 C -0.142 4.142 4 C 0.063 3.937 5 C 0.581 3.419 6 O -0.536 6.536 7 N -0.578 5.578 8 C 0.088 3.912 9 C 0.089 3.911 10 C 0.158 3.842 11 N -0.606 5.606 12 C -0.222 4.222 13 H 0.083 0.917 14 C -0.007 4.007 15 N -0.920 5.920 16 Si 0.915 3.085 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.109 3.891 21 N -0.506 5.506 22 S 0.433 5.567 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.170 0.830 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.254 0.746 34 H 0.048 0.952 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 -8.941 3.992 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.378 4.378 3 C -0.174 4.174 4 C -0.112 4.112 5 C 0.364 3.636 6 O -0.413 6.413 7 N -0.309 5.309 8 C -0.056 4.056 9 C -0.014 4.014 10 C 0.032 3.968 11 N -0.333 5.333 12 C -0.350 4.350 13 H 0.100 0.900 14 C -0.204 4.204 15 N -0.567 5.567 16 Si 0.745 3.255 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.216 1.216 20 C -0.018 4.018 21 N -0.340 5.340 22 S 0.589 5.411 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.187 0.813 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.080 -10.239 3.817 22.861 hybrid contribution 0.715 2.014 -0.030 2.138 sum -19.365 -8.224 3.787 21.378 Atomic orbital electron populations 1.20192 0.86270 1.03181 1.03487 1.26048 1.03154 1.00103 1.08496 1.21243 0.90344 1.01909 1.03896 1.21213 0.95101 0.89331 1.05538 1.17380 0.81872 0.86601 0.77753 1.90780 1.83038 1.16345 1.51170 1.47924 1.05154 1.10244 1.67606 1.21985 1.01673 0.80283 1.01661 1.24157 0.84376 0.93326 0.99584 1.22677 0.83295 0.95298 0.95549 1.45712 1.10239 1.66788 1.10533 1.19045 0.86213 1.30877 0.98822 0.89952 1.24812 0.98613 1.00948 0.96040 1.69828 1.35667 1.48032 1.03162 0.86008 0.83993 0.78117 0.77404 1.20409 1.21724 1.21622 1.22968 0.86930 0.98616 0.93250 1.72977 1.26675 1.10840 1.23497 1.80580 0.88731 1.13394 1.58425 0.90950 0.90220 0.90188 0.81295 0.92322 0.90875 0.90148 0.86532 0.94849 0.90418 0.93599 0.93336 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.46 36.01 0.38 -0.02 16 2 C -0.25 -2.25 6.58 -35.46 -0.23 -2.48 16 3 C -0.14 -1.70 9.93 -40.27 -0.40 -2.10 16 4 C 0.06 0.91 6.43 -84.06 -0.54 0.37 16 5 C 0.58 10.42 7.65 -12.40 -0.09 10.33 16 6 O -0.54 -10.96 16.18 5.30 0.09 -10.88 16 7 N -0.58 -10.48 3.09 -176.92 -0.55 -11.03 16 8 C 0.09 1.37 7.88 59.85 0.47 1.84 16 9 C 0.09 1.86 4.38 -70.14 -0.31 1.56 16 10 C 0.16 3.83 6.94 -2.84 -0.02 3.81 16 11 N -0.61 -15.94 3.70 -177.89 -0.66 -16.60 16 12 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 13 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.92 -27.54 11.39 55.49 0.63 -26.91 16 16 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 C 0.11 2.36 8.44 -2.97 -0.03 2.34 16 21 N -0.51 -6.60 7.50 24.84 0.19 -6.42 16 22 S 0.43 3.95 23.20 -107.50 -2.49 1.46 16 23 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.17 1.95 8.00 -52.49 -0.42 1.53 16 27 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.07 1.18 6.17 -51.93 -0.32 0.85 16 29 H 0.08 1.14 5.80 -51.93 -0.30 0.84 16 30 H 0.12 2.60 7.26 -51.93 -0.38 2.22 16 31 H 0.03 0.80 6.72 -51.93 -0.35 0.46 16 32 H 0.08 2.10 7.17 -51.93 -0.37 1.72 16 33 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.74 6.91 -51.93 -0.36 0.38 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -33.08 305.64 -8.40 -41.48 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.15 Total: -1.88 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -1.03 Total: 8.84 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.39 Total: -60.95 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.49 Total: 1.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.08 -8.40 -41.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042661269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.487 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds