Wall clock time and date at job start Wed Apr 15 2020 11:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34999 * 127.27570 * 2 1 4 4 C 1.39484 * 111.68152 * 180.15375 * 3 2 1 5 5 C 1.47695 * 122.10061 * 179.82219 * 4 3 2 6 6 O 1.21578 * 120.00016 * 353.57068 * 5 4 3 7 7 N 1.34771 * 119.99966 * 173.29632 * 5 4 3 8 8 C 1.46500 * 120.00145 * 354.65153 * 7 5 4 9 9 C 1.46503 * 120.00266 * 174.64522 * 7 5 4 10 10 C 1.53946 * 113.74455 * 218.74312 * 9 7 5 11 11 N 1.47816 * 86.03355 * 222.08525 * 10 9 7 12 12 C 1.36935 * 134.45360 * 204.64126 * 11 10 9 13 13 H 1.07999 * 120.00051 * 179.86467 * 12 11 10 14 14 C 1.38813 * 120.00074 * 359.87181 * 12 11 10 15 15 N 1.31618 * 119.99998 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00015 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47249 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47104 * 119.99796 * 16 14 12 19 19 H 1.48501 * 109.47202 * 239.99887 * 16 14 12 20 20 C 1.47576 * 91.05357 * 24.55158 * 11 10 9 21 21 N 1.30601 * 115.79271 * 359.55176 * 4 3 2 22 22 S 1.56141 * 109.80064 * 0.24730 * 21 4 3 23 23 H 1.08995 * 109.47421 * 180.31464 * 1 2 3 24 24 H 1.08995 * 109.47708 * 300.32170 * 1 2 3 25 25 H 1.09007 * 109.46720 * 60.31990 * 1 2 3 26 26 H 1.08002 * 124.15726 * 359.95001 * 3 2 1 27 27 H 1.08997 * 109.47701 * 85.14733 * 8 7 5 28 28 H 1.08998 * 109.47381 * 205.15253 * 8 7 5 29 29 H 1.09006 * 109.46860 * 325.14959 * 8 7 5 30 30 H 1.08994 * 112.94287 * 350.34031 * 9 7 5 31 31 H 1.08997 * 113.76645 * 336.35070 * 10 9 7 32 32 H 1.08998 * 113.76802 * 107.75032 * 10 9 7 33 33 H 0.97004 * 120.00095 * 179.97438 * 15 14 12 34 34 H 1.09002 * 113.76854 * 221.14976 * 20 11 10 35 35 H 1.08995 * 113.77523 * 89.75259 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6681 0.6993 -0.0035 5 6 4.7604 1.6934 -0.0081 6 8 4.5054 2.8762 -0.1268 7 7 6.0394 1.2898 0.1249 8 6 6.3390 -0.1193 0.3912 9 6 7.1302 2.2602 0.0031 10 6 8.3648 1.7152 -0.7376 11 7 9.1628 2.3990 0.3020 12 6 10.4388 2.8923 0.3617 13 1 10.7935 3.3643 1.2660 14 6 11.2763 2.7859 -0.7402 15 7 10.8442 2.2104 -1.8422 16 14 13.0167 3.4596 -0.6590 17 1 13.2559 4.0530 0.6810 18 1 13.9852 2.3582 -0.8921 19 1 13.1930 4.5025 -1.7014 20 6 8.0320 2.3385 1.2483 21 7 3.8994 -0.5861 0.0031 22 16 2.5472 -1.3668 0.0071 23 1 -0.3634 -1.0276 0.0056 24 1 -0.3634 0.5188 0.8870 25 1 -0.3633 0.5089 -0.8929 26 1 1.9807 2.0980 -0.0008 27 1 6.3762 -0.6671 -0.5504 28 1 7.3024 -0.1970 0.8951 29 1 5.5612 -0.5422 1.0271 30 1 6.7955 3.2326 -0.3581 31 1 8.4484 0.6288 -0.7119 32 1 8.4959 2.1297 -1.7371 33 1 11.4293 2.1364 -2.6123 34 1 7.8979 3.2496 1.8314 35 1 8.0176 1.4355 1.8586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042661269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:35 Heat of formation + Delta-G solvation = 59.083130 kcal Electronic energy + Delta-G solvation = -19495.595285 eV Core-core repulsion = 16429.295456 eV Total energy + Delta-G solvation = -3066.299829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.79727 -40.16458 -38.83493 -36.10255 -34.32069 -33.77606 -29.79806 -29.20684 -27.95814 -26.96907 -26.68007 -24.59003 -21.98153 -20.99706 -20.14610 -19.48682 -18.81291 -17.80180 -17.53803 -17.04143 -16.82123 -15.82228 -15.56980 -15.49124 -14.82055 -14.60308 -14.01812 -13.92667 -13.88305 -13.68719 -13.61714 -13.34145 -13.21582 -13.13380 -12.83867 -12.60913 -12.16617 -12.06544 -11.94130 -11.70166 -11.59084 -10.94068 -10.87918 -10.41729 -9.85195 -9.55700 -9.00349 -7.95087 -5.30295 -0.45088 0.49187 0.69374 0.82022 1.44959 1.46725 1.57196 1.88697 2.08516 2.46515 3.21386 3.34351 3.47250 3.75497 3.77331 4.16772 4.22380 4.30802 4.34166 4.41681 4.66060 4.69234 4.73698 4.80430 4.80923 4.93348 4.97348 5.15419 5.16647 5.21950 5.31134 5.42238 5.63783 5.84536 6.30317 6.85515 6.94977 7.54038 8.46931 9.22252 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.049712 B = 0.003495 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.110705 B = 8008.522103 C = 8236.110604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.232 4.232 3 C -0.163 4.163 4 C 0.038 3.962 5 C 0.578 3.422 6 O -0.572 6.572 7 N -0.583 5.583 8 C 0.095 3.905 9 C 0.113 3.887 10 C 0.163 3.837 11 N -0.634 5.634 12 C -0.237 4.237 13 H 0.088 0.912 14 C -0.066 4.066 15 N -0.953 5.953 16 Si 0.985 3.015 17 H -0.264 1.264 18 H -0.290 1.290 19 H -0.292 1.292 20 C 0.117 3.883 21 N -0.539 5.539 22 S 0.518 5.482 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.929 -10.492 5.068 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.363 4.363 3 C -0.195 4.195 4 C -0.134 4.134 5 C 0.363 3.637 6 O -0.451 6.451 7 N -0.313 5.313 8 C -0.048 4.048 9 C 0.008 3.992 10 C 0.036 3.964 11 N -0.361 5.361 12 C -0.365 4.365 13 H 0.106 0.894 14 C -0.259 4.259 15 N -0.602 5.602 16 Si 0.813 3.187 17 H -0.188 1.188 18 H -0.217 1.217 19 H -0.219 1.219 20 C -0.009 4.009 21 N -0.376 5.376 22 S 0.674 5.326 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.183 0.817 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.975 -11.798 4.926 25.423 hybrid contribution 1.091 2.349 -0.357 2.614 sum -20.884 -9.449 4.569 23.373 Atomic orbital electron populations 1.20416 0.83412 1.05136 1.04477 1.26506 1.04923 0.99156 1.05721 1.21232 0.89822 1.02778 1.05648 1.20759 0.94580 0.89138 1.08928 1.17893 0.82323 0.87015 0.76459 1.90743 1.83679 1.18134 1.52546 1.47866 1.04780 1.10636 1.68067 1.22034 1.01960 0.78777 1.01983 1.23468 0.84491 0.92960 0.98290 1.22512 0.84969 0.95025 0.93870 1.46014 1.10578 1.67122 1.12428 1.19450 0.87318 1.30626 0.99061 0.89403 1.25705 1.02731 1.01730 0.95742 1.70020 1.36881 1.49545 1.03716 0.84921 0.78858 0.77163 0.77804 1.18793 1.21659 1.21855 1.23052 0.85025 0.99709 0.93143 1.72547 1.30390 1.10469 1.24176 1.80247 0.86200 1.11157 1.54987 0.88526 0.89037 0.89241 0.81674 0.92303 0.91522 0.88234 0.88319 0.94652 0.93985 0.94089 0.92584 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.46 71.24 0.75 0.21 16 2 C -0.23 -3.51 6.58 24.94 0.16 -3.35 16 3 C -0.16 -3.72 9.93 21.82 0.22 -3.51 16 4 C 0.04 1.07 6.43 42.13 0.27 1.34 16 5 C 0.58 21.09 7.65 86.74 0.66 21.76 16 6 O -0.57 -24.18 16.18 -3.96 -0.06 -24.25 16 7 N -0.58 -21.42 3.09 -831.91 -2.57 -23.99 16 8 C 0.10 2.93 7.88 127.77 1.01 3.93 16 9 C 0.11 4.86 4.38 46.75 0.20 5.07 16 10 C 0.16 8.17 6.94 86.44 0.60 8.77 16 11 N -0.63 -34.03 3.70 -716.72 -2.65 -36.68 16 12 C -0.24 -13.64 10.70 84.03 0.90 -12.74 16 13 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 14 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 15 N -0.95 -58.69 11.39 21.65 0.25 -58.45 16 16 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 C 0.12 5.06 8.44 86.49 0.73 5.79 16 21 N -0.54 -13.13 7.50 -75.32 -0.57 -13.69 16 22 S 0.52 7.73 23.20 -56.49 -1.31 6.42 16 23 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 24 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.17 3.79 8.00 -2.91 -0.02 3.76 16 27 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 28 H 0.07 2.11 6.17 -2.39 -0.01 2.09 16 29 H 0.10 2.69 5.80 -2.38 -0.01 2.67 16 30 H 0.10 4.62 7.26 -2.39 -0.02 4.61 16 31 H 0.04 1.76 6.72 -2.39 -0.02 1.74 16 32 H 0.04 2.39 7.17 -2.39 -0.02 2.38 16 33 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.27 6.91 -2.39 -0.02 2.25 16 Total: -1.00 -73.46 305.64 2.19 -71.28 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.11 Total: 6.93 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 5.97 Total: 23.91 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -5.55 Total: -132.81 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.25 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.31 Total: 6.42 kcal Total: -73.46 2.19 -71.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042661269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.360 kcal (2) G-P(sol) polarization free energy of solvation -73.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds