Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28652 * 124.71955 * 2 1 4 4 C 1.33562 * 115.76489 * 179.97438 * 3 2 1 5 5 C 1.47270 * 123.13796 * 179.97438 * 4 3 2 6 6 O 1.21631 * 119.99494 * 186.24155 * 5 4 3 7 7 N 1.34767 * 120.00169 * 6.24178 * 5 4 3 8 8 C 1.46500 * 120.00007 * 5.57360 * 7 5 4 9 9 C 1.46504 * 120.00317 * 185.56776 * 7 5 4 10 10 C 1.53493 * 114.21171 * 240.00388 * 9 7 5 11 11 N 1.47064 * 87.98735 * 220.14780 * 10 9 7 12 12 C 1.36936 * 136.05657 * 207.08667 * 11 10 9 13 13 H 1.07997 * 120.00163 * 354.76455 * 12 11 10 14 14 C 1.38810 * 119.99821 * 174.76906 * 12 11 10 15 15 N 1.31622 * 120.00115 * 184.08050 * 14 12 11 16 16 Si 1.86802 * 120.00320 * 4.07639 * 14 12 11 17 17 H 1.48493 * 109.47439 * 174.26964 * 16 14 12 18 18 H 1.48507 * 109.47103 * 294.27122 * 16 14 12 19 19 H 1.48505 * 109.47173 * 54.26664 * 16 14 12 20 20 C 1.47068 * 87.88595 * 27.33928 * 11 10 9 21 21 C 1.35208 * 113.71987 * 0.26737 * 4 3 2 22 22 S 1.70777 * 124.72266 * 179.97438 * 2 1 3 23 23 H 1.09008 * 109.46912 * 90.00201 * 1 2 3 24 24 H 1.08995 * 109.46996 * 209.99995 * 1 2 3 25 25 H 1.08996 * 109.47588 * 330.00648 * 1 2 3 26 26 H 1.08999 * 109.46973 * 275.75073 * 8 7 5 27 27 H 1.09001 * 109.47471 * 35.74869 * 8 7 5 28 28 H 1.09005 * 109.47406 * 155.75090 * 8 7 5 29 29 H 1.08997 * 113.27556 * 13.07206 * 9 7 5 30 30 H 1.09000 * 113.47225 * 105.36390 * 10 9 7 31 31 H 1.09002 * 113.46391 * 334.92835 * 10 9 7 32 32 H 0.97003 * 119.99865 * 5.00250 * 15 14 12 33 33 H 1.09002 * 113.46265 * 87.43730 * 20 11 10 34 34 H 1.08993 * 113.47133 * 217.88346 * 20 11 10 35 35 H 1.07994 * 125.58894 * 179.73628 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2397 1.0575 0.0000 4 6 3.5590 0.8496 0.0005 5 6 4.5462 1.9424 0.0001 6 8 5.7309 1.6916 -0.1139 7 7 4.1370 3.2202 0.1260 8 6 2.7256 3.5152 0.3854 9 6 5.1034 4.3144 0.0034 10 6 5.2154 5.1983 1.2533 11 7 5.3054 6.3622 0.3588 12 6 5.8600 7.6127 0.4206 13 1 6.3152 7.9568 1.3375 14 6 5.8370 8.4380 -0.6953 15 7 6.4399 9.6075 -0.6614 16 14 4.9505 7.8889 -2.2451 17 1 4.9528 8.9956 -3.2352 18 1 5.6442 6.7085 -2.8204 19 1 3.5496 7.5258 -1.9119 20 6 4.5322 5.5943 -0.6289 21 6 3.9036 -0.4579 -0.0048 22 16 2.4797 -1.4036 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 2.1784 3.5303 -0.5571 27 1 2.3075 2.7471 1.0360 28 1 2.6408 4.4877 0.8704 29 1 6.0621 3.9983 -0.4077 30 1 6.1237 5.0224 1.8295 31 1 4.3167 5.1935 1.8702 32 1 6.9611 9.8621 0.1161 33 1 3.4535 5.6939 -0.5081 34 1 4.8586 5.7556 -1.6562 35 1 4.9130 -0.8418 -0.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043625871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = 93.608675 kcal Electronic energy + Delta-G solvation = -19703.413644 eV Core-core repulsion = 16638.610955 eV Total energy + Delta-G solvation = -3064.802689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 4.48 seconds Orbital eigenvalues (eV) -40.79572 -39.28161 -37.82115 -34.62858 -32.62364 -32.19775 -28.64677 -28.20246 -26.72120 -25.49933 -25.33773 -22.60076 -21.03234 -19.81928 -19.13655 -18.39684 -17.47298 -16.50725 -16.22531 -15.84974 -15.32989 -15.03333 -14.74700 -14.04675 -13.73901 -13.63528 -13.16286 -12.95061 -12.67640 -12.58688 -12.45595 -12.11547 -11.99898 -11.82641 -11.52459 -11.28116 -10.55412 -10.38030 -10.09119 -9.92867 -9.72289 -9.32949 -9.15468 -9.13370 -8.92853 -8.23837 -7.16891 -6.31755 -3.25101 0.28035 0.94866 1.33339 1.82351 3.13379 3.30684 3.41470 3.44744 3.65838 3.73286 4.53199 4.59013 4.77703 4.89665 4.98075 5.06180 5.09735 5.13584 5.39355 5.42306 5.47591 5.60885 5.75934 5.86154 5.90545 6.11915 6.17714 6.26434 6.38635 6.53591 6.93614 7.06554 7.21705 7.56530 8.22522 8.23066 8.96410 9.48008 10.32428 11.19909 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034653 B = 0.004078 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.824745 B = 6864.546452 C = 7161.739306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.020 3.980 3 N -0.436 5.436 4 C 0.018 3.982 5 C 0.588 3.412 6 O -0.537 6.537 7 N -0.582 5.582 8 C 0.086 3.914 9 C 0.101 3.899 10 C 0.113 3.887 11 N -0.621 5.621 12 C -0.302 4.302 13 H 0.085 0.915 14 C -0.022 4.022 15 N -0.933 5.933 16 Si 1.072 2.928 17 H -0.294 1.294 18 H -0.291 1.291 19 H -0.289 1.289 20 C 0.085 3.915 21 C -0.226 4.226 22 S 0.197 5.803 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.125 0.875 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.108 -24.761 1.632 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.259 4.259 3 N -0.152 5.152 4 C -0.116 4.116 5 C 0.372 3.628 6 O -0.415 6.415 7 N -0.313 5.313 8 C -0.057 4.057 9 C -0.003 4.003 10 C -0.015 4.015 11 N -0.349 5.349 12 C -0.428 4.428 13 H 0.102 0.898 14 C -0.221 4.221 15 N -0.575 5.575 16 Si 0.905 3.095 17 H -0.221 1.221 18 H -0.219 1.219 19 H -0.216 1.216 20 C -0.042 4.042 21 C -0.368 4.368 22 S 0.454 5.546 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.143 0.857 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.266 -24.619 0.080 28.454 hybrid contribution 1.009 0.310 1.635 1.946 sum -13.257 -24.309 1.715 27.742 Atomic orbital electron populations 1.20445 0.84709 1.04393 1.04118 1.27295 1.02457 0.91538 1.04597 1.67353 1.03081 1.30118 1.14692 1.20503 0.89992 0.93515 1.07616 1.17161 0.86555 0.81799 0.77245 1.90806 1.16273 1.83377 1.51043 1.47735 1.10045 1.05005 1.68497 1.22027 0.79946 1.01832 1.01858 1.23622 0.93246 0.83795 0.99670 1.22745 0.99200 0.86011 0.93515 1.45787 1.61288 1.13000 1.14820 1.20152 1.34112 0.88723 0.99825 0.89751 1.25707 1.01201 0.94587 1.00621 1.70919 1.33808 1.20223 1.32552 0.83695 0.75857 0.73848 0.76103 1.22129 1.21930 1.21624 1.23265 0.96152 0.88728 0.96018 1.26569 1.05957 0.96740 1.07550 1.82801 0.94910 1.11818 1.65109 0.89432 0.90069 0.89007 0.92307 0.89765 0.91225 0.85727 0.93075 0.94180 0.92857 0.93334 0.92298 0.79410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.46 36.00 0.38 0.00 16 2 C 0.02 0.18 7.34 -13.61 -0.10 0.08 16 3 N -0.44 -5.20 6.96 -8.51 -0.06 -5.26 16 4 C 0.02 0.25 6.43 -84.52 -0.54 -0.29 16 5 C 0.59 10.04 7.64 -12.59 -0.10 9.94 16 6 O -0.54 -10.60 16.27 5.25 0.09 -10.52 16 7 N -0.58 -9.94 3.12 -174.88 -0.54 -10.49 16 8 C 0.09 1.22 7.99 59.85 0.48 1.70 16 9 C 0.10 2.00 4.55 -67.68 -0.31 1.69 16 10 C 0.11 2.38 8.23 -8.51 -0.07 2.31 16 11 N -0.62 -15.86 3.69 -184.62 -0.68 -16.54 16 12 C -0.30 -8.93 11.09 -15.06 -0.17 -9.09 16 13 H 0.08 2.61 8.05 -52.49 -0.42 2.18 16 14 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 15 N -0.93 -29.88 13.70 55.49 0.76 -29.12 16 16 Si 1.07 27.48 25.10 -169.99 -4.27 23.21 16 17 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 18 H -0.29 -7.12 6.33 56.52 0.36 -6.76 16 19 H -0.29 -6.91 6.68 56.52 0.38 -6.53 16 20 C 0.08 1.87 5.33 -8.37 -0.04 1.83 16 21 C -0.23 -2.48 10.62 29.65 0.31 -2.16 16 22 S 0.20 1.45 22.92 -107.50 -2.46 -1.02 16 23 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 24 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 27 H 0.08 1.09 5.89 -51.93 -0.31 0.79 16 28 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 29 H 0.12 2.64 7.34 -51.93 -0.38 2.26 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.79 7.05 -51.93 -0.37 0.43 16 32 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 33 H 0.05 1.02 6.37 -51.93 -0.33 0.69 16 34 H 0.06 1.37 4.01 -51.93 -0.21 1.16 16 35 H 0.19 1.91 8.04 -52.49 -0.42 1.49 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -35.08 299.09 -6.99 -42.08 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.07 Total: -2.08 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.26 Total: 5.22 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.53 Total: -61.41 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.27 Total: 23.21 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.46 Total: -1.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.08 -6.99 -42.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043625871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.684 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.48 seconds