Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28652 * 124.71955 * 2 1 4 4 C 1.33562 * 115.76489 * 179.97438 * 3 2 1 5 5 C 1.47270 * 123.13796 * 179.97438 * 4 3 2 6 6 O 1.21631 * 119.99494 * 186.24155 * 5 4 3 7 7 N 1.34767 * 120.00169 * 6.24178 * 5 4 3 8 8 C 1.46500 * 120.00007 * 5.57360 * 7 5 4 9 9 C 1.46504 * 120.00317 * 185.56776 * 7 5 4 10 10 C 1.53493 * 114.21171 * 240.00388 * 9 7 5 11 11 N 1.47064 * 87.98735 * 220.14780 * 10 9 7 12 12 C 1.36936 * 136.05657 * 207.08667 * 11 10 9 13 13 H 1.07997 * 120.00163 * 354.76455 * 12 11 10 14 14 C 1.38810 * 119.99821 * 174.76906 * 12 11 10 15 15 N 1.31622 * 120.00115 * 184.08050 * 14 12 11 16 16 Si 1.86802 * 120.00320 * 4.07639 * 14 12 11 17 17 H 1.48493 * 109.47439 * 174.26964 * 16 14 12 18 18 H 1.48507 * 109.47103 * 294.27122 * 16 14 12 19 19 H 1.48505 * 109.47173 * 54.26664 * 16 14 12 20 20 C 1.47068 * 87.88595 * 27.33928 * 11 10 9 21 21 C 1.35208 * 113.71987 * 0.26737 * 4 3 2 22 22 S 1.70777 * 124.72266 * 179.97438 * 2 1 3 23 23 H 1.09008 * 109.46912 * 90.00201 * 1 2 3 24 24 H 1.08995 * 109.46996 * 209.99995 * 1 2 3 25 25 H 1.08996 * 109.47588 * 330.00648 * 1 2 3 26 26 H 1.08999 * 109.46973 * 275.75073 * 8 7 5 27 27 H 1.09001 * 109.47471 * 35.74869 * 8 7 5 28 28 H 1.09005 * 109.47406 * 155.75090 * 8 7 5 29 29 H 1.08997 * 113.27556 * 13.07206 * 9 7 5 30 30 H 1.09000 * 113.47225 * 105.36390 * 10 9 7 31 31 H 1.09002 * 113.46391 * 334.92835 * 10 9 7 32 32 H 0.97003 * 119.99865 * 5.00250 * 15 14 12 33 33 H 1.09002 * 113.46265 * 87.43730 * 20 11 10 34 34 H 1.08993 * 113.47133 * 217.88346 * 20 11 10 35 35 H 1.07994 * 125.58894 * 179.73628 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2397 1.0575 0.0000 4 6 3.5590 0.8496 0.0005 5 6 4.5462 1.9424 0.0001 6 8 5.7309 1.6916 -0.1139 7 7 4.1370 3.2202 0.1260 8 6 2.7256 3.5152 0.3854 9 6 5.1034 4.3144 0.0034 10 6 5.2154 5.1983 1.2533 11 7 5.3054 6.3622 0.3588 12 6 5.8600 7.6127 0.4206 13 1 6.3152 7.9568 1.3375 14 6 5.8370 8.4380 -0.6953 15 7 6.4399 9.6075 -0.6614 16 14 4.9505 7.8889 -2.2451 17 1 4.9528 8.9956 -3.2352 18 1 5.6442 6.7085 -2.8204 19 1 3.5496 7.5258 -1.9119 20 6 4.5322 5.5943 -0.6289 21 6 3.9036 -0.4579 -0.0048 22 16 2.4797 -1.4036 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 2.1784 3.5303 -0.5571 27 1 2.3075 2.7471 1.0360 28 1 2.6408 4.4877 0.8704 29 1 6.0621 3.9983 -0.4077 30 1 6.1237 5.0224 1.8295 31 1 4.3167 5.1935 1.8702 32 1 6.9611 9.8621 0.1161 33 1 3.4535 5.6939 -0.5081 34 1 4.8586 5.7556 -1.6562 35 1 4.9130 -0.8418 -0.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043625871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = 67.830159 kcal Electronic energy + Delta-G solvation = -19704.531484 eV Core-core repulsion = 16638.610955 eV Total energy + Delta-G solvation = -3065.920529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -41.91779 -40.60545 -39.23596 -36.12117 -34.44175 -33.21932 -30.10091 -29.30252 -27.96923 -27.14304 -26.68077 -24.14927 -22.22753 -21.03992 -20.46173 -19.69404 -19.40516 -17.86569 -17.53540 -17.01511 -16.85999 -16.09373 -16.00581 -15.40573 -15.18800 -15.06961 -14.31604 -14.09005 -13.86232 -13.66265 -13.44467 -13.34296 -13.25106 -13.17592 -13.01051 -12.79818 -12.39990 -12.26796 -11.46088 -11.29364 -11.14708 -11.10279 -10.64672 -10.53252 -9.91968 -9.61110 -9.28429 -8.69796 -5.55415 -0.50038 0.28566 0.60509 0.88140 1.35390 1.44496 1.64860 1.84470 2.18193 2.49072 2.88688 3.00036 3.15687 3.46438 3.70018 4.00543 4.06167 4.18396 4.28608 4.32413 4.44239 4.49636 4.55822 4.63087 4.75299 4.79214 4.84786 4.96183 5.05618 5.14608 5.26555 5.49515 5.87851 6.22293 6.47304 6.62726 6.96018 7.23830 8.15903 8.84295 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034653 B = 0.004078 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.824745 B = 6864.546452 C = 7161.739306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 N -0.461 5.461 4 C -0.010 4.010 5 C 0.584 3.416 6 O -0.576 6.576 7 N -0.584 5.584 8 C 0.090 3.910 9 C 0.121 3.879 10 C 0.115 3.885 11 N -0.651 5.651 12 C -0.293 4.293 13 H 0.054 0.946 14 C -0.078 4.078 15 N -0.967 5.967 16 Si 1.108 2.892 17 H -0.299 1.299 18 H -0.276 1.276 19 H -0.259 1.259 20 C 0.085 3.915 21 C -0.241 4.241 22 S 0.291 5.709 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.248 0.752 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.263 -28.132 1.181 33.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.265 4.265 3 N -0.178 5.178 4 C -0.145 4.145 5 C 0.371 3.629 6 O -0.456 6.456 7 N -0.314 5.314 8 C -0.051 4.051 9 C 0.016 3.984 10 C -0.011 4.011 11 N -0.380 5.380 12 C -0.420 4.420 13 H 0.072 0.928 14 C -0.270 4.270 15 N -0.611 5.611 16 Si 0.934 3.066 17 H -0.227 1.227 18 H -0.203 1.203 19 H -0.184 1.184 20 C -0.040 4.040 21 C -0.384 4.384 22 S 0.549 5.451 23 H 0.119 0.881 24 H 0.126 0.874 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.477 -28.061 -0.333 33.061 hybrid contribution 1.944 1.139 1.886 2.938 sum -15.534 -26.923 1.552 31.122 Atomic orbital electron populations 1.20659 0.82059 1.05740 1.05335 1.27950 1.04062 0.91771 1.02721 1.67284 1.02270 1.31862 1.16422 1.20051 0.90400 0.92960 1.11047 1.17681 0.86877 0.82345 0.76001 1.90772 1.18130 1.84014 1.52693 1.47706 1.10564 1.04442 1.68724 1.22144 0.78215 1.02150 1.02634 1.22972 0.93197 0.84196 0.98066 1.22892 0.99892 0.84420 0.93913 1.45778 1.62269 1.12562 1.17389 1.20016 1.33065 0.90401 0.98559 0.92768 1.27026 1.01918 0.94336 1.03768 1.71017 1.35757 1.21987 1.32373 0.83278 0.76673 0.73843 0.72761 1.22683 1.20345 1.18351 1.23409 0.96932 0.88764 0.94923 1.26832 1.08101 0.96985 1.06499 1.82505 0.91275 1.08956 1.62385 0.88134 0.87433 0.88994 0.91456 0.88267 0.91452 0.87433 0.93581 0.91811 0.94289 0.90972 0.93006 0.79455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.46 71.23 0.74 0.30 16 2 C 0.01 0.19 7.34 88.57 0.65 0.84 16 3 N -0.46 -9.79 6.96 -180.83 -1.26 -11.05 16 4 C -0.01 -0.25 6.43 40.56 0.26 0.01 16 5 C 0.58 19.61 7.64 86.62 0.66 20.27 16 6 O -0.58 -22.98 16.27 -4.13 -0.07 -23.04 16 7 N -0.58 -19.24 3.12 -825.45 -2.57 -21.81 16 8 C 0.09 2.35 7.99 127.77 1.02 3.37 16 9 C 0.12 4.73 4.55 45.55 0.21 4.94 16 10 C 0.12 4.81 8.23 83.18 0.68 5.49 16 11 N -0.65 -33.15 3.69 -738.01 -2.72 -35.88 16 12 C -0.29 -17.71 11.09 84.03 0.93 -16.78 16 13 H 0.05 3.51 8.05 -2.91 -0.02 3.49 16 14 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 15 N -0.97 -63.79 13.70 21.65 0.30 -63.49 16 16 Si 1.11 55.08 25.10 68.60 1.72 56.80 16 17 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 18 H -0.28 -12.94 6.33 99.48 0.63 -12.31 16 19 H -0.26 -11.44 6.68 99.48 0.66 -10.77 16 20 C 0.08 3.63 5.33 83.27 0.44 4.07 16 21 C -0.24 -4.80 10.62 67.12 0.71 -4.09 16 22 S 0.29 3.14 22.92 -56.49 -1.29 1.84 16 23 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 24 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 1.65 8.05 -2.39 -0.02 1.63 16 27 H 0.10 2.33 5.89 -2.39 -0.01 2.32 16 28 H 0.07 1.77 5.95 -2.38 -0.01 1.76 16 29 H 0.11 4.61 7.34 -2.39 -0.02 4.59 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.40 7.05 -2.39 -0.02 2.38 16 32 H 0.25 16.40 8.73 -92.71 -0.81 15.59 16 33 H 0.07 2.79 6.37 -2.39 -0.02 2.77 16 34 H 0.05 2.31 4.01 -2.39 -0.01 2.30 16 35 H 0.19 3.60 8.04 -2.91 -0.02 3.58 16 Total: -1.00 -78.49 299.09 1.85 -76.64 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.96 Total: 5.90 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.78 Total: 14.07 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -6.26 Total: -132.22 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.07 Total: -23.04 kcal Atomic # 14 Polarization: 55.08 SS G_CDS: 1.72 Total: 56.80 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.29 Total: 1.84 kcal Total: -78.49 1.85 -76.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043625871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.475 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds