Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 N 1.46506 * 109.46831 * 120.00078 * 2 1 3 5 5 C 1.34779 * 119.99461 * 274.99712 * 4 2 1 6 6 O 1.21574 * 120.00484 * 0.02562 * 5 4 2 7 7 C 1.47696 * 119.99437 * 180.02562 * 5 4 2 8 8 C 1.39484 * 122.10301 * 180.02562 * 7 5 4 9 9 C 1.34995 * 111.68925 * 179.97438 * 8 7 5 10 10 S 1.71766 * 105.44618 * 359.97438 * 9 8 7 11 11 N 1.30600 * 122.10322 * 359.71314 * 7 5 4 12 12 C 1.53002 * 109.46982 * 239.99707 * 2 1 3 13 13 C 1.53943 * 113.74049 * 158.74593 * 12 2 1 14 14 N 1.47812 * 86.03624 * 222.08213 * 13 12 2 15 15 C 1.36932 * 134.45834 * 204.63677 * 14 13 12 16 16 H 1.07995 * 120.00395 * 179.86632 * 15 14 13 17 17 C 1.38817 * 120.00007 * 359.87680 * 15 14 13 18 18 N 1.31616 * 120.00028 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99813 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47531 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47185 * 119.99911 * 19 17 15 22 22 H 1.48507 * 109.46809 * 239.99104 * 19 17 15 23 23 C 1.47583 * 91.04785 * 24.54989 * 14 13 12 24 24 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 25 25 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 26 26 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 27 27 H 0.96995 * 119.99814 * 94.99660 * 4 2 1 28 28 H 1.08007 * 124.15686 * 359.95725 * 8 7 5 29 29 H 1.07996 * 127.27579 * 180.02562 * 9 8 7 30 30 H 1.09002 * 112.94415 * 290.33524 * 12 2 1 31 31 H 1.09003 * 113.76909 * 336.34642 * 13 12 2 32 32 H 1.09000 * 113.77268 * 107.74525 * 13 12 2 33 33 H 0.96995 * 120.00501 * 180.02562 * 18 17 15 34 34 H 1.09002 * 113.76477 * 221.14838 * 23 14 13 35 35 H 1.09002 * 113.87465 * 89.77029 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1613 2.4118 7 6 2.6398 -0.7143 3.5630 8 6 2.7894 -0.0617 4.7866 9 6 3.2520 -0.8946 5.7430 10 16 3.4428 -2.4169 4.9707 11 7 2.9573 -1.9811 3.5520 12 6 2.0400 -0.7213 -1.2492 13 6 3.4848 -0.3523 -1.6316 14 7 2.9979 -0.3179 -3.0268 15 6 3.5876 -0.4759 -4.2525 16 1 2.9929 -0.4040 -5.1512 17 6 4.9497 -0.7287 -4.3401 18 7 5.6745 -0.8160 -3.2450 19 14 5.7539 -0.9449 -6.0122 20 1 4.7286 -0.8020 -7.0768 21 1 6.8042 0.0891 -6.1938 22 1 6.3684 -2.2943 -6.0951 23 6 1.6214 -0.0473 -2.5684 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.2489 -1.6318 1.1526 28 1 2.5631 0.9818 4.9489 29 1 3.4578 -0.6546 6.7756 30 1 1.8528 -1.7949 -1.2262 31 1 3.8048 0.6189 -1.2539 32 1 4.2071 -1.1449 -1.4366 33 1 6.6264 -0.9923 -3.3061 34 1 0.8587 -0.5970 -3.1199 35 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969933589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = 37.219424 kcal Electronic energy + Delta-G solvation = -19362.354740 eV Core-core repulsion = 16295.106830 eV Total energy + Delta-G solvation = -3067.247910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55504 -40.17796 -39.07835 -36.26088 -34.21800 -32.72254 -31.65701 -29.39386 -27.65349 -26.49378 -25.63162 -23.52744 -22.05366 -21.41212 -20.58072 -19.23451 -18.83052 -18.58470 -17.33140 -16.93941 -16.51775 -16.04818 -15.74807 -15.17837 -15.03058 -14.68544 -14.52885 -14.24472 -14.04226 -13.44374 -13.28702 -13.11324 -12.93326 -12.73513 -12.56367 -12.27060 -12.17941 -11.97154 -11.76990 -11.52148 -11.29500 -11.00361 -10.88640 -10.84064 -10.16903 -9.71819 -8.94165 -7.91896 -5.26038 -0.40931 0.56234 0.76182 0.82404 1.44101 1.45667 1.56060 2.09491 2.19299 2.46186 3.28762 3.35382 3.63694 3.78420 3.87720 3.93813 4.26560 4.43527 4.45358 4.55625 4.57841 4.72204 4.80433 4.83927 4.87525 4.98405 5.05781 5.23545 5.27520 5.31128 5.45271 5.53502 5.63072 5.91411 6.46891 6.89745 7.07950 7.59289 8.55091 9.25447 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023171 B = 0.003850 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.125381 B = 7271.345030 C = 8072.830704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.066 0.934 4 N -0.696 5.696 5 C 0.585 3.415 6 O -0.567 6.567 7 C 0.026 3.974 8 C -0.157 4.157 9 C -0.264 4.264 10 S 0.533 5.467 11 N -0.555 5.555 12 C -0.111 4.111 13 C 0.167 3.833 14 N -0.644 5.644 15 C -0.235 4.235 16 H 0.087 0.913 17 C -0.070 4.070 18 N -0.957 5.957 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.294 1.294 22 H -0.290 1.290 23 C 0.133 3.867 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.412 0.588 28 H 0.171 0.829 29 H 0.225 0.775 30 H 0.101 0.899 31 H 0.004 0.996 32 H 0.038 0.962 33 H 0.248 0.752 34 H 0.067 0.933 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 -4.010 20.233 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.052 3.948 3 H 0.084 0.916 4 N -0.346 5.346 5 C 0.367 3.633 6 O -0.446 6.446 7 C -0.147 4.147 8 C -0.189 4.189 9 C -0.413 4.413 10 S 0.688 5.312 11 N -0.392 5.392 12 C -0.131 4.131 13 C 0.042 3.958 14 N -0.371 5.371 15 C -0.363 4.363 16 H 0.105 0.895 17 C -0.263 4.263 18 N -0.606 5.606 19 Si 0.809 3.191 20 H -0.187 1.187 21 H -0.221 1.221 22 H -0.217 1.217 23 C 0.008 3.992 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.249 0.751 28 H 0.189 0.811 29 H 0.242 0.758 30 H 0.119 0.881 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.817 -5.276 19.605 21.756 hybrid contribution 0.619 1.729 -0.931 2.058 sum -7.198 -3.547 18.674 20.326 Atomic orbital electron populations 1.22048 0.92860 1.03097 1.02643 1.20973 0.95448 0.95938 0.82437 0.91569 1.45911 1.65159 1.14735 1.08767 1.17645 0.77252 0.85612 0.82762 1.90753 1.52435 1.16194 1.85228 1.21072 1.07424 0.89418 0.96772 1.21484 1.03303 1.03865 0.90229 1.27635 1.05526 1.00946 1.07157 1.80234 1.48374 1.10896 0.91716 1.71994 1.21663 1.17694 1.27837 1.23448 0.96400 1.00424 0.92833 1.22163 0.93958 0.96384 0.83332 1.46428 1.05905 1.82870 1.01883 1.19531 0.92004 1.40413 0.84403 0.89520 1.25676 0.96774 1.02904 1.00908 1.70036 1.05822 1.56834 1.27920 0.84977 0.78220 0.76787 0.79150 1.18660 1.22134 1.21714 1.22676 0.87620 0.97694 0.91231 0.92905 0.90117 0.91006 0.75137 0.81119 0.75804 0.88121 0.97802 0.94315 0.94354 0.91495 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.31 71.98 0.67 -3.18 16 2 C 0.16 5.08 2.38 44.99 0.11 5.19 16 3 H 0.07 2.48 7.41 -2.39 -0.02 2.47 16 4 N -0.70 -21.74 5.07 -445.52 -2.26 -24.00 16 5 C 0.58 19.11 7.78 86.74 0.67 19.78 16 6 O -0.57 -21.45 16.32 -3.95 -0.06 -21.51 16 7 C 0.03 0.69 6.66 42.13 0.28 0.97 16 8 C -0.16 -3.27 9.98 21.82 0.22 -3.05 16 9 C -0.26 -3.38 11.41 67.07 0.77 -2.62 16 10 S 0.53 7.65 23.20 -56.49 -1.31 6.34 16 11 N -0.55 -13.43 10.71 -75.33 -0.81 -14.23 16 12 C -0.11 -4.12 3.47 -10.14 -0.04 -4.15 16 13 C 0.17 8.35 7.08 86.44 0.61 8.96 16 14 N -0.64 -34.13 3.70 -716.16 -2.65 -36.78 16 15 C -0.24 -13.57 10.70 84.04 0.90 -12.67 16 16 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 17 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 18 N -0.96 -59.85 11.39 21.65 0.25 -59.61 16 19 Si 0.98 46.78 29.55 68.60 2.03 48.80 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 C 0.13 5.30 7.64 86.48 0.66 5.96 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.92 7.52 -2.39 -0.02 1.90 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.41 12.08 8.07 -92.71 -0.75 11.33 16 28 H 0.17 3.46 7.99 -2.91 -0.02 3.44 16 29 H 0.23 0.99 8.06 -2.91 -0.02 0.96 16 30 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 32 H 0.04 2.16 7.17 -2.39 -0.02 2.15 16 33 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -75.58 314.17 0.86 -74.72 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.36 Total: 14.72 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.32 Total: 11.55 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -5.47 Total: -134.62 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.06 Total: -21.51 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -1.31 Total: 6.34 kcal Total: -75.58 0.86 -74.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969933589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.936 kcal (2) G-P(sol) polarization free energy of solvation -75.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds