Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87160 * 2 1 4 4 C 1.54315 * 109.88156 * 238.98260 * 2 1 3 5 5 H 1.09005 * 110.72207 * 336.75541 * 4 2 1 6 6 N 1.46497 * 110.72358 * 100.02690 * 4 2 1 7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2 8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00382 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99790 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46773 * 90.00662 * 11 9 7 13 13 H 1.48497 * 109.47129 * 210.00112 * 11 9 7 14 14 H 1.48499 * 109.47224 * 330.00526 * 11 9 7 15 15 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.88216 * 121.17092 * 2 1 3 18 18 C 1.34776 * 125.65312 * 298.41902 * 17 2 1 19 19 O 1.21630 * 120.00006 * 359.97438 * 18 17 2 20 20 C 1.47270 * 120.00098 * 179.97438 * 18 17 2 21 21 C 1.35203 * 123.13857 * 179.97438 * 20 18 17 22 22 S 1.70945 * 108.82851 * 179.97438 * 21 20 18 23 23 C 1.70772 * 91.12376 * 359.97438 * 22 21 20 24 24 N 1.28648 * 110.56336 * 359.76920 * 23 22 21 25 25 H 1.09001 * 109.47001 * 181.02018 * 1 2 3 26 26 H 1.09003 * 109.47113 * 301.01603 * 1 2 3 27 27 H 1.09000 * 109.46955 * 61.01187 * 1 2 3 28 28 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 29 29 H 0.96997 * 120.00558 * 179.97438 * 10 9 7 30 30 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 31 31 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 32 32 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 33 33 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 34 34 H 1.08004 * 125.59225 * 359.95620 * 21 20 18 35 35 H 1.08001 * 124.71886 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3051 -1.4437 -1.6202 6 7 2.4555 0.1991 -2.2872 7 6 2.5574 -0.2176 -3.5876 8 1 2.3429 -1.2446 -3.8439 9 6 2.9376 0.6795 -4.5763 10 7 3.0360 0.2788 -5.8261 11 14 3.3094 2.4557 -4.1329 12 1 4.7508 2.5920 -3.8026 13 1 2.9806 3.3328 -5.2852 14 1 2.4925 2.8542 -2.9585 15 6 3.2876 -1.5133 -0.6945 16 6 2.8156 -1.8804 0.7345 17 7 2.0300 -0.7156 1.1829 18 6 1.8071 -0.3656 2.4652 19 8 1.1410 0.6198 2.7197 20 6 2.3699 -1.1763 3.5583 21 6 2.1867 -0.8835 4.8655 22 16 2.9930 -2.0568 5.8119 23 6 3.5272 -2.8704 4.4086 24 7 3.1037 -2.2728 3.3510 25 1 -0.3633 -1.0275 0.0183 26 1 -0.3633 0.5295 0.8808 27 1 -0.3633 0.4980 -0.8989 28 1 2.6485 1.1215 -2.0570 29 1 3.3013 0.9058 -6.5170 30 1 3.4852 -2.4093 -1.2829 31 1 4.1656 -0.8681 -0.6622 32 1 2.1900 -2.7727 0.7099 33 1 3.6731 -2.0353 1.3893 34 1 1.6236 -0.0456 5.2491 35 1 4.1326 -3.7648 4.4090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986050917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = 16.072789 kcal Electronic energy + Delta-G solvation = -19806.648074 eV Core-core repulsion = 16738.483177 eV Total energy + Delta-G solvation = -3068.164897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77279 -40.17873 -38.72569 -36.05225 -33.61357 -32.42146 -31.71214 -31.11856 -26.99452 -26.92699 -24.60858 -24.37531 -22.49500 -21.65383 -20.34616 -19.71254 -19.15552 -17.78030 -17.17826 -16.90983 -16.51528 -15.99192 -15.91626 -15.40402 -14.89302 -14.76213 -14.62631 -14.29312 -14.12382 -13.79545 -13.55241 -13.32406 -13.08784 -12.90990 -12.69240 -12.54066 -12.25219 -12.02737 -11.82364 -11.62137 -11.21838 -11.00822 -10.71879 -10.60056 -10.02880 -9.66740 -9.33720 -8.02987 -5.37333 -0.45540 0.34971 0.65747 0.95454 1.38280 1.38867 1.46104 1.90786 2.26186 2.46961 3.07549 3.27267 3.48533 3.60613 3.81414 3.99222 4.09007 4.16230 4.30421 4.35646 4.38813 4.45267 4.63500 4.73232 4.85075 4.98459 5.06070 5.17459 5.18905 5.33667 5.39862 5.76263 6.20441 6.36830 6.49133 6.99712 7.04603 7.78764 7.97523 9.17985 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.004010 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.150946 B = 6980.880884 C = 7251.012624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.059 0.941 4 C 0.175 3.825 5 H 0.071 0.929 6 N -0.743 5.743 7 C -0.226 4.226 8 H 0.066 0.934 9 C -0.056 4.056 10 N -0.980 5.980 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.295 1.295 14 H -0.258 1.258 15 C -0.149 4.149 16 C 0.118 3.882 17 N -0.594 5.594 18 C 0.595 3.405 19 O -0.575 6.575 20 C -0.016 4.016 21 C -0.239 4.239 22 S 0.299 5.701 23 C -0.005 4.005 24 N -0.465 5.465 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.363 0.637 29 H 0.258 0.742 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.188 0.812 35 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -8.101 27.777 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 H 0.077 0.923 4 C 0.066 3.934 5 H 0.089 0.911 6 N -0.386 5.386 7 C -0.357 4.357 8 H 0.084 0.916 9 C -0.248 4.248 10 N -0.630 5.630 11 Si 0.774 3.226 12 H -0.206 1.206 13 H -0.222 1.222 14 H -0.183 1.183 15 C -0.190 4.190 16 C -0.005 4.005 17 N -0.325 5.325 18 C 0.383 3.617 19 O -0.456 6.456 20 C -0.151 4.151 21 C -0.382 4.382 22 S 0.555 5.445 23 C -0.304 4.304 24 N -0.180 5.180 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.197 0.803 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.206 0.794 35 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.986 -8.122 28.295 29.454 hybrid contribution -0.158 1.836 -1.376 2.300 sum 0.828 -6.285 26.920 27.656 Atomic orbital electron populations 1.21975 0.93776 1.02508 1.02229 1.21717 0.95305 0.95707 0.84780 0.92338 1.21371 0.95154 0.90873 0.85991 0.91096 1.42677 1.82960 1.08955 1.04010 1.18986 1.37158 0.96051 0.83481 0.91578 1.25360 1.02457 1.01902 0.95050 1.69848 1.56195 1.36068 1.00881 0.85550 0.78438 0.81241 0.77402 1.20566 1.22150 1.18331 1.23416 0.98942 1.01349 0.95294 1.22592 0.96280 0.86994 0.94586 1.48381 1.51199 1.28871 1.04068 1.17242 0.79733 0.83506 0.81208 1.90757 1.42334 1.28709 1.83795 1.20148 1.04990 0.96975 0.93002 1.26876 1.06723 1.07657 0.96940 1.82614 1.39106 1.13354 1.09414 1.29232 1.04332 1.05925 0.90888 1.67108 1.11324 1.06773 1.32842 0.91689 0.92447 0.91438 0.80314 0.93292 0.89703 0.91944 0.90509 0.87412 0.79427 0.74228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.09 71.98 0.65 -4.21 16 2 C 0.13 4.58 3.21 45.34 0.15 4.72 16 3 H 0.06 2.27 7.68 -2.39 -0.02 2.25 16 4 C 0.18 6.69 3.12 46.18 0.14 6.83 16 5 H 0.07 2.75 7.83 -2.38 -0.02 2.73 16 6 N -0.74 -34.72 5.05 -317.34 -1.60 -36.32 16 7 C -0.23 -12.64 10.46 84.03 0.88 -11.76 16 8 H 0.07 3.99 8.06 -2.91 -0.02 3.96 16 9 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 10 N -0.98 -62.29 13.97 21.65 0.30 -61.98 16 11 Si 0.95 46.03 27.74 68.60 1.90 47.93 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 14 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16 15 C -0.15 -4.94 6.77 31.98 0.22 -4.72 16 16 C 0.12 3.29 6.03 86.85 0.52 3.82 16 17 N -0.59 -19.14 3.07 -791.96 -2.43 -21.57 16 18 C 0.60 19.45 7.62 86.62 0.66 20.11 16 19 O -0.58 -21.81 15.76 -4.13 -0.06 -21.88 16 20 C -0.02 -0.41 6.61 40.56 0.27 -0.14 16 21 C -0.24 -4.43 10.62 67.12 0.71 -3.72 16 22 S 0.30 2.66 22.97 -56.49 -1.30 1.36 16 23 C -0.01 -0.06 12.17 130.71 1.59 1.53 16 24 N -0.47 -9.62 7.34 -193.03 -1.42 -11.03 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.96 6.90 -2.39 -0.02 1.94 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.36 16.81 5.37 -92.70 -0.50 16.31 16 29 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.11 2.80 6.03 -2.39 -0.01 2.79 16 34 H 0.19 3.35 8.03 -2.91 -0.02 3.33 16 35 H 0.24 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -73.52 304.80 2.22 -71.31 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.56 Total: 22.52 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.26 Total: 9.67 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -5.15 Total: -130.91 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.88 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.30 Total: 1.36 kcal Total: -73.52 2.22 -71.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986050917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.378 kcal (2) G-P(sol) polarization free energy of solvation -73.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds