Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99845 * 2 1 4 4 C 1.54327 * 109.88212 * 238.89950 * 2 1 3 5 5 H 1.09002 * 110.71517 * 144.23445 * 4 2 1 6 6 N 1.46496 * 110.71777 * 21.13953 * 4 2 1 7 7 C 1.36945 * 119.99718 * 157.44137 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55150 * 103.10110 * 262.68605 * 4 2 1 16 16 C 1.54914 * 101.58287 * 324.58850 * 15 4 2 17 17 N 1.47317 * 109.85122 * 121.29612 * 2 1 3 18 18 C 1.34782 * 125.61141 * 300.41903 * 17 2 1 19 19 O 1.21629 * 120.00260 * 0.20080 * 18 17 2 20 20 C 1.47267 * 119.99652 * 180.19988 * 18 17 2 21 21 C 1.35211 * 123.14190 * 179.72973 * 20 18 17 22 22 S 1.70936 * 108.82953 * 179.90509 * 21 20 18 23 23 C 1.70770 * 91.12944 * 0.30301 * 22 21 20 24 24 N 1.28647 * 110.55777 * 359.82369 * 23 22 21 25 25 H 1.08997 * 109.47683 * 181.10140 * 1 2 3 26 26 H 1.09004 * 109.47517 * 301.10314 * 1 2 3 27 27 H 1.09003 * 109.47545 * 61.09860 * 1 2 3 28 28 H 0.96996 * 120.00499 * 337.43867 * 6 4 2 29 29 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 30 30 H 1.09000 * 111.00827 * 82.66368 * 15 4 2 31 31 H 1.08997 * 111.00493 * 206.47452 * 15 4 2 32 32 H 1.08998 * 110.36748 * 155.85045 * 16 15 4 33 33 H 1.09005 * 110.36345 * 278.16933 * 16 15 4 34 34 H 1.07999 * 125.58519 * 0.02562 * 21 20 18 35 35 H 1.08001 * 124.72218 * 179.82293 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6200 6 7 1.0292 -0.8028 -2.2874 7 6 1.3924 -0.9892 -3.5946 8 1 2.4349 -1.0966 -3.8552 9 6 0.4207 -1.0400 -4.5844 10 7 -0.8499 -0.9086 -4.2668 11 14 0.9162 -1.2936 -6.3676 12 1 1.1475 0.0254 -7.0094 13 1 2.1633 -2.0977 -6.4252 14 1 -0.1684 -2.0101 -7.0856 15 6 2.3553 -2.1701 -0.6956 16 6 2.8596 -1.8524 0.7343 17 7 2.0302 -0.7198 1.1840 18 6 1.7749 -0.3937 2.4666 19 8 1.0738 0.5669 2.7219 20 6 2.3448 -1.2005 3.5589 21 6 2.1346 -0.9280 4.8665 22 16 2.9586 -2.0898 5.8115 23 6 3.5432 -2.8666 4.4076 24 7 3.1222 -2.2663 3.3506 25 1 -0.3634 -1.0274 0.0198 26 1 -0.3634 0.5309 0.8799 27 1 -0.3634 0.4967 -0.8997 28 1 0.0929 -0.7059 -2.0533 29 1 -1.5289 -0.9438 -4.9586 30 1 1.4501 -2.7766 -0.6649 31 1 3.1310 -2.6595 -1.2845 32 1 2.7138 -2.7125 1.3877 33 1 3.9113 -1.5668 0.7108 34 1 1.5415 -0.1113 5.2508 35 1 4.1781 -3.7404 4.4072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986050955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = 42.260946 kcal Electronic energy + Delta-G solvation = -19837.745838 eV Core-core repulsion = 16770.716545 eV Total energy + Delta-G solvation = -3067.029293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64858 -39.03599 -37.29985 -34.12335 -31.67652 -30.81954 -30.56681 -28.94314 -26.05366 -25.08795 -23.68332 -22.98364 -21.44477 -19.55493 -19.15513 -18.14823 -17.42404 -16.26185 -16.18167 -15.66859 -14.91861 -14.83761 -14.36118 -13.93009 -13.59749 -13.53296 -13.25682 -12.81242 -12.52107 -12.16605 -11.97281 -11.69359 -11.46699 -11.16968 -10.95614 -10.79226 -10.40015 -10.24522 -10.06115 -9.97829 -9.82297 -9.73330 -9.59406 -9.25586 -8.90211 -8.30814 -6.98801 -5.79064 -3.08567 0.32350 1.01494 1.36159 1.90169 3.21380 3.41615 3.43128 3.48418 3.49981 3.94304 4.57830 4.71813 4.94780 5.07857 5.22526 5.30626 5.47481 5.61883 5.66700 5.70472 5.83141 5.97114 6.16870 6.25811 6.30961 6.44698 6.61029 6.66953 6.77684 6.86490 7.04333 7.20842 7.68989 7.78734 8.31042 8.39756 9.51119 10.06644 10.41891 11.43537 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042462 B = 0.003737 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.248830 B = 7490.112711 C = 7926.231680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.073 0.927 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.718 5.718 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.932 5.932 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.282 1.282 14 H -0.292 1.292 15 C -0.156 4.156 16 C 0.102 3.898 17 N -0.589 5.589 18 C 0.600 3.400 19 O -0.541 6.541 20 C 0.017 3.983 21 C -0.224 4.224 22 S 0.197 5.803 23 C -0.004 4.004 24 N -0.433 5.433 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.391 0.609 29 H 0.256 0.744 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.189 0.811 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 -4.216 20.619 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.091 0.909 4 C 0.061 3.939 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.580 5.580 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.197 4.197 16 C -0.021 4.021 17 N -0.321 5.321 18 C 0.385 3.615 19 O -0.419 6.419 20 C -0.118 4.118 21 C -0.366 4.366 22 S 0.451 5.549 23 C -0.303 4.303 24 N -0.148 5.148 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.229 0.771 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.206 0.794 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.360 -4.101 21.112 23.455 hybrid contribution -0.341 0.232 -1.656 1.707 sum 9.019 -3.869 19.456 21.791 Atomic orbital electron populations 1.22004 0.94431 1.02453 1.02766 1.21969 0.95493 0.95726 0.84384 0.90880 1.21194 0.93138 0.92290 0.87260 0.91810 1.42675 1.04765 1.86366 1.02285 1.19257 0.92759 1.41884 0.83510 0.91051 1.24750 0.95251 1.02658 0.98086 1.69664 0.99056 1.56869 1.32389 0.86173 0.77205 0.77642 0.85041 1.21694 1.20722 1.21797 1.23582 1.01588 1.00929 0.93613 1.22588 0.93765 0.89254 0.96444 1.48453 1.48940 1.30368 1.04332 1.16671 0.80578 0.83450 0.80753 1.90793 1.39212 1.28668 1.83220 1.20587 1.01583 0.96171 0.93476 1.26605 1.06873 1.06382 0.96740 1.82875 1.40629 1.18855 1.12502 1.28593 1.05316 1.05567 0.90864 1.67194 1.10184 1.06613 1.30776 0.92531 0.92154 0.90023 0.77131 0.93409 0.90913 0.90696 0.88928 0.92029 0.79375 0.77879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 7.94 37.15 0.29 -2.82 16 2 C 0.13 2.41 3.50 -66.79 -0.23 2.17 16 3 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.17 3.48 3.46 -66.10 -0.23 3.25 16 5 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 6 N -0.72 -17.77 4.98 -51.66 -0.26 -18.03 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 11 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 C -0.16 -2.75 6.77 -24.58 -0.17 -2.92 16 16 C 0.10 1.58 6.04 -2.53 -0.02 1.56 16 17 N -0.59 -10.15 3.09 -164.11 -0.51 -10.66 16 18 C 0.60 10.36 7.61 -12.59 -0.10 10.27 16 19 O -0.54 -10.57 15.62 5.25 0.08 -10.49 16 20 C 0.02 0.23 6.61 -84.52 -0.56 -0.33 16 21 C -0.22 -2.43 10.62 29.65 0.31 -2.11 16 22 S 0.20 1.36 22.96 -107.50 -2.47 -1.11 16 23 C 0.00 -0.03 12.17 51.43 0.63 0.59 16 24 N -0.43 -5.26 7.33 -12.36 -0.09 -5.35 16 25 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 26 H 0.06 1.18 6.77 -51.93 -0.35 0.82 16 27 H 0.08 1.72 6.72 -51.93 -0.35 1.37 16 28 H 0.39 10.21 4.99 -40.82 -0.20 10.01 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.36 6.02 -51.93 -0.31 1.05 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.19 1.89 8.03 -52.49 -0.42 1.47 16 35 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -32.37 303.56 -7.41 -39.78 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.14 Total: 8.85 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.31 Total: 2.46 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.13 Total: -61.22 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.47 Total: -1.11 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.37 -7.41 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986050955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.044 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds