Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99845 * 2 1 4 4 C 1.54327 * 109.88212 * 238.89950 * 2 1 3 5 5 H 1.09002 * 110.71517 * 144.23445 * 4 2 1 6 6 N 1.46496 * 110.71777 * 21.13953 * 4 2 1 7 7 C 1.36945 * 119.99718 * 157.44137 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55150 * 103.10110 * 262.68605 * 4 2 1 16 16 C 1.54914 * 101.58287 * 324.58850 * 15 4 2 17 17 N 1.47317 * 109.85122 * 121.29612 * 2 1 3 18 18 C 1.34782 * 125.61141 * 300.41903 * 17 2 1 19 19 O 1.21629 * 120.00260 * 0.20080 * 18 17 2 20 20 C 1.47267 * 119.99652 * 180.19988 * 18 17 2 21 21 C 1.35211 * 123.14190 * 179.72973 * 20 18 17 22 22 S 1.70936 * 108.82953 * 179.90509 * 21 20 18 23 23 C 1.70770 * 91.12944 * 0.30301 * 22 21 20 24 24 N 1.28647 * 110.55777 * 359.82369 * 23 22 21 25 25 H 1.08997 * 109.47683 * 181.10140 * 1 2 3 26 26 H 1.09004 * 109.47517 * 301.10314 * 1 2 3 27 27 H 1.09003 * 109.47545 * 61.09860 * 1 2 3 28 28 H 0.96996 * 120.00499 * 337.43867 * 6 4 2 29 29 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 30 30 H 1.09000 * 111.00827 * 82.66368 * 15 4 2 31 31 H 1.08997 * 111.00493 * 206.47452 * 15 4 2 32 32 H 1.08998 * 110.36748 * 155.85045 * 16 15 4 33 33 H 1.09005 * 110.36345 * 278.16933 * 16 15 4 34 34 H 1.07999 * 125.58519 * 0.02562 * 21 20 18 35 35 H 1.08001 * 124.72218 * 179.82293 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6200 6 7 1.0292 -0.8028 -2.2874 7 6 1.3924 -0.9892 -3.5946 8 1 2.4349 -1.0966 -3.8552 9 6 0.4207 -1.0400 -4.5844 10 7 -0.8499 -0.9086 -4.2668 11 14 0.9162 -1.2936 -6.3676 12 1 1.1475 0.0254 -7.0094 13 1 2.1633 -2.0977 -6.4252 14 1 -0.1684 -2.0101 -7.0856 15 6 2.3553 -2.1701 -0.6956 16 6 2.8596 -1.8524 0.7343 17 7 2.0302 -0.7198 1.1840 18 6 1.7749 -0.3937 2.4666 19 8 1.0738 0.5669 2.7219 20 6 2.3448 -1.2005 3.5589 21 6 2.1346 -0.9280 4.8665 22 16 2.9586 -2.0898 5.8115 23 6 3.5432 -2.8666 4.4076 24 7 3.1222 -2.2663 3.3506 25 1 -0.3634 -1.0274 0.0198 26 1 -0.3634 0.5309 0.8799 27 1 -0.3634 0.4967 -0.8997 28 1 0.0929 -0.7059 -2.0533 29 1 -1.5289 -0.9438 -4.9586 30 1 1.4501 -2.7766 -0.6649 31 1 3.1310 -2.6595 -1.2845 32 1 2.7138 -2.7125 1.3877 33 1 3.9113 -1.5668 0.7108 34 1 1.5415 -0.1113 5.2508 35 1 4.1781 -3.7404 4.4072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986050955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = 20.152452 kcal Electronic energy + Delta-G solvation = -19838.704534 eV Core-core repulsion = 16770.716545 eV Total energy + Delta-G solvation = -3067.987990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75803 -40.18466 -38.71481 -35.93789 -33.47588 -32.16922 -31.65219 -30.63624 -27.04095 -26.76787 -25.28964 -24.39918 -22.62806 -20.81491 -20.27753 -19.48139 -19.26773 -17.37435 -17.32515 -16.98826 -16.47788 -16.09584 -15.76122 -15.56352 -14.97123 -14.72222 -14.42896 -14.27280 -13.95142 -13.65182 -13.26173 -13.11496 -12.98285 -12.89360 -12.78809 -12.51656 -12.09746 -12.04659 -11.63286 -11.58293 -11.14621 -10.95583 -10.70811 -10.58648 -10.01392 -9.64245 -9.01411 -7.93307 -5.22852 -0.44649 0.35738 0.66453 0.97108 1.49822 1.51491 1.59797 1.94394 2.27908 2.58279 3.09430 3.38583 3.65854 3.77130 3.91508 3.98749 4.16021 4.19493 4.36328 4.38566 4.41024 4.56026 4.64381 4.75687 4.85671 4.98214 5.10551 5.17402 5.24711 5.35232 5.47716 5.54783 6.27966 6.39317 6.52114 7.02556 7.35261 8.07610 8.32578 9.30457 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042462 B = 0.003737 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.248830 B = 7490.112711 C = 7926.231680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.132 3.868 3 H 0.069 0.931 4 C 0.167 3.833 5 H 0.069 0.931 6 N -0.731 5.731 7 C -0.241 4.241 8 H 0.081 0.919 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.975 3.025 12 H -0.289 1.289 13 H -0.266 1.266 14 H -0.298 1.298 15 C -0.145 4.145 16 C 0.117 3.883 17 N -0.594 5.594 18 C 0.594 3.406 19 O -0.576 6.576 20 C -0.016 4.016 21 C -0.239 4.239 22 S 0.300 5.700 23 C -0.005 4.005 24 N -0.465 5.465 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.380 0.620 29 H 0.251 0.749 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.188 0.812 35 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.859 -5.798 22.522 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.087 0.913 4 C 0.057 3.943 5 H 0.087 0.913 6 N -0.374 5.374 7 C -0.372 4.372 8 H 0.099 0.901 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.804 3.196 12 H -0.216 1.216 13 H -0.191 1.191 14 H -0.225 1.225 15 C -0.186 4.186 16 C -0.005 4.005 17 N -0.325 5.325 18 C 0.381 3.619 19 O -0.457 6.457 20 C -0.151 4.151 21 C -0.383 4.383 22 S 0.556 5.444 23 C -0.304 4.304 24 N -0.180 5.180 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.217 0.783 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.205 0.795 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 11.873 -5.711 23.065 26.563 hybrid contribution -1.032 0.700 -2.007 2.363 sum 10.841 -5.011 21.058 24.209 Atomic orbital electron populations 1.21811 0.95397 1.01351 1.01544 1.21736 0.94600 0.95751 0.85088 0.91253 1.21367 0.92116 0.94119 0.86696 0.91302 1.42837 1.05247 1.86605 1.02703 1.19677 0.93131 1.39859 0.84575 0.90062 1.25568 0.95290 1.03668 1.02177 1.69832 1.00081 1.59039 1.33242 0.85117 0.77044 0.77413 0.80028 1.21626 1.19078 1.22525 1.23407 1.01244 0.98692 0.95284 1.22578 0.94068 0.89151 0.94734 1.48482 1.49292 1.30646 1.04069 1.17279 0.79948 0.83376 0.81274 1.90752 1.40828 1.30354 1.83802 1.20156 1.04198 0.97728 0.92997 1.26877 1.06895 1.07532 0.96951 1.82574 1.37249 1.15195 1.09403 1.29243 1.04414 1.05843 0.90873 1.67102 1.11225 1.06831 1.32880 0.93547 0.92347 0.91982 0.78344 0.94064 0.92809 0.89377 0.87603 0.90329 0.79478 0.74142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 7.94 71.98 0.57 -5.33 16 2 C 0.13 5.11 3.50 45.28 0.16 5.27 16 3 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 4 C 0.17 6.75 3.46 46.18 0.16 6.91 16 5 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 6 N -0.73 -36.98 4.98 -317.34 -1.58 -38.56 16 7 C -0.24 -13.19 9.97 84.03 0.84 -12.36 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 10 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 11 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 14 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 15 C -0.15 -5.03 6.77 31.99 0.22 -4.81 16 16 C 0.12 3.44 6.04 86.86 0.52 3.97 16 17 N -0.59 -20.46 3.09 -791.37 -2.44 -22.90 16 18 C 0.59 20.65 7.61 86.62 0.66 21.30 16 19 O -0.58 -23.21 15.62 -4.12 -0.06 -23.28 16 20 C -0.02 -0.42 6.61 40.56 0.27 -0.15 16 21 C -0.24 -4.77 10.62 67.12 0.71 -4.06 16 22 S 0.30 2.94 22.96 -56.49 -1.30 1.65 16 23 C -0.01 -0.06 12.17 130.71 1.59 1.53 16 24 N -0.47 -10.16 7.33 -193.02 -1.42 -11.58 16 25 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 26 H 0.06 2.40 6.77 -2.38 -0.02 2.38 16 27 H 0.06 2.78 6.72 -2.39 -0.02 2.77 16 28 H 0.38 20.68 4.99 -92.71 -0.46 20.22 16 29 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.11 2.92 6.02 -2.39 -0.01 2.91 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.19 3.61 8.03 -2.91 -0.02 3.59 16 35 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -72.10 303.56 2.33 -69.77 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.66 Total: 27.97 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.17 Total: 8.45 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -5.16 Total: -132.51 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.65 kcal Total: -72.10 2.33 -69.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986050955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.921 kcal (2) G-P(sol) polarization free energy of solvation -72.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds