Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46898 * 109.47123 * 179.97438 * 8 7 6 11 11 C 1.46901 * 110.99830 * 274.99462 * 10 8 7 12 12 C 1.53000 * 109.47220 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47507 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99504 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00485 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99709 * 0.02562 * 15 13 12 17 17 C 1.46499 * 120.00135 * 179.97438 * 15 13 12 18 18 C 1.50706 * 109.46572 * 90.00568 * 17 15 13 19 19 H 1.07998 * 120.00121 * 359.97438 * 18 17 15 20 20 C 1.37881 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99733 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47116 * 119.99884 * 22 20 18 25 25 H 1.48497 * 109.47056 * 239.99784 * 22 20 18 26 26 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 31 31 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 33 33 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 34 34 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 37 37 H 1.00900 * 111.00405 * 151.04786 * 10 8 7 38 38 H 1.08992 * 109.47513 * 300.00058 * 11 10 8 39 39 H 1.09010 * 109.46900 * 60.00523 * 11 10 8 40 40 H 1.09002 * 109.47086 * 300.00500 * 12 11 10 41 41 H 1.09002 * 109.47270 * 60.00353 * 12 11 10 42 42 H 1.08999 * 109.46770 * 90.00058 * 16 15 13 43 43 H 1.09000 * 109.46258 * 209.99587 * 16 15 13 44 44 H 1.08999 * 109.46962 * 329.99485 * 16 15 13 45 45 H 1.08999 * 109.47206 * 210.00049 * 17 15 13 46 46 H 1.08999 * 109.47597 * 330.00574 * 17 15 13 47 47 H 0.97006 * 119.99708 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6758 -1.7490 1.2493 10 7 1.5497 -0.0293 2.4490 11 6 1.4863 -0.9450 3.5960 12 6 0.9737 -0.1897 4.8238 13 6 0.9092 -1.1288 6.0007 14 8 1.2402 -2.2882 5.8700 15 7 0.4838 -0.6803 7.1983 16 6 0.0834 0.7202 7.3559 17 6 0.4206 -1.5934 8.3421 18 6 1.7339 -1.5649 9.0807 19 1 2.5356 -0.9303 8.7326 20 6 1.9124 -2.3496 10.2003 21 7 0.9364 -3.1226 10.6238 22 14 3.5406 -2.3147 11.1154 23 1 4.4674 -1.3708 10.4408 24 1 3.3128 -1.8710 12.5141 25 1 4.1359 -3.6751 11.1183 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6767 -0.2076 -2.1392 30 1 1.6767 -1.7490 -1.2490 31 1 3.9334 -1.2354 -2.1389 32 1 3.9337 0.3057 -1.2486 33 1 3.7158 -2.4708 0.0005 34 1 5.1695 -1.4441 0.0006 35 1 3.9328 -1.2356 2.1398 36 1 3.9331 0.3056 1.2498 37 1 0.6523 0.3990 2.2784 38 1 0.8098 -1.7682 3.3668 39 1 2.4816 -1.3391 3.8017 40 1 1.6507 0.6334 5.0529 41 1 -0.0214 0.2048 4.6185 42 1 -0.9813 0.8196 7.1448 43 1 0.2829 1.0421 8.3780 44 1 0.6509 1.3405 6.6623 45 1 -0.3801 -1.2812 9.0125 46 1 0.2245 -2.6057 7.9886 47 1 1.0619 -3.6744 11.4117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097163495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -86.107249 kcal Electronic energy + Delta-G solvation = -22594.192045 eV Core-core repulsion = 19388.624040 eV Total energy + Delta-G solvation = -3205.568006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76643 -40.09706 -36.74430 -36.19846 -34.74611 -33.57106 -32.23830 -30.09491 -28.91777 -27.31161 -26.97218 -25.34671 -23.61970 -22.32550 -22.05318 -20.67137 -19.87110 -18.72022 -17.86334 -17.32477 -17.03762 -16.56726 -15.95334 -15.85608 -15.62041 -15.31196 -15.12507 -14.69686 -14.33965 -14.10362 -13.82766 -13.68089 -13.47578 -13.42931 -13.28218 -13.16228 -12.83214 -12.81185 -12.67831 -12.52982 -12.40164 -12.23105 -12.22345 -11.95779 -11.74686 -11.68621 -11.37338 -11.07202 -10.90400 -10.66693 -10.60135 -9.44032 -9.40347 -8.24249 -6.39321 1.34984 1.37588 1.49655 1.83823 2.29351 2.42621 3.04980 3.15695 3.72466 3.80376 3.82936 4.00977 4.06164 4.16074 4.22798 4.38501 4.42018 4.45532 4.54184 4.60024 4.62134 4.64054 4.72881 4.78090 4.87552 4.90925 4.96117 4.98441 5.00819 5.07193 5.10955 5.17687 5.21405 5.22406 5.30972 5.35397 5.40547 5.42018 5.55209 5.57504 5.83478 6.03908 6.04709 6.51890 6.68429 6.79071 7.26720 7.48175 8.83063 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.003092 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.461857 B = 9052.237888 C = 9706.802141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.107 4.107 8 C 0.092 3.908 9 H 0.027 0.973 10 N -0.680 5.680 11 C 0.086 3.914 12 C -0.116 4.116 13 C 0.493 3.507 14 O -0.603 6.603 15 N -0.611 5.611 16 C 0.078 3.922 17 C 0.257 3.743 18 C -0.543 4.543 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.282 1.282 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.349 0.651 38 H 0.019 0.981 39 H 0.052 0.948 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.024 0.976 46 H -0.004 1.004 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 11.710 -23.626 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.146 4.146 8 C -0.018 4.018 9 H 0.045 0.955 10 N -0.314 5.314 11 C -0.044 4.044 12 C -0.156 4.156 13 C 0.282 3.718 14 O -0.485 6.485 15 N -0.342 5.342 16 C -0.064 4.064 17 C 0.136 3.864 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.207 1.207 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.171 0.829 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.042 0.958 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.908 11.274 -23.357 25.952 hybrid contribution -0.117 -1.257 0.935 1.571 sum 0.791 10.017 -22.422 24.571 Atomic orbital electron populations 1.21912 0.94731 1.01699 1.02705 1.21239 0.95781 1.00150 0.93333 0.89979 1.21576 0.95625 1.00409 0.97281 1.21528 0.95538 1.01013 0.97283 1.21540 1.00604 0.99021 0.94598 1.21510 0.94636 1.01100 0.97312 1.21570 0.95451 0.95337 0.89408 0.95505 1.60512 1.34036 1.32832 1.04037 1.21447 0.99921 0.93097 0.89929 1.21530 1.05284 0.98022 0.90801 1.21414 0.76506 0.88794 0.85111 1.90633 1.50982 1.21697 1.85218 1.48208 1.63751 1.12481 1.09801 1.21955 1.00902 0.79956 1.03592 1.18759 0.96154 0.88467 0.83062 1.21745 0.99943 1.25380 1.11058 0.92922 1.25894 1.00837 0.94448 0.98139 1.70063 1.34090 1.27364 1.25409 0.85341 0.78859 0.77990 0.78457 1.19117 1.19212 1.20742 0.93487 0.92110 0.90888 0.90327 0.92620 0.91087 0.91397 0.92886 0.91439 0.94249 0.91189 0.82904 0.96279 0.92899 0.86636 0.86312 0.90975 0.91702 0.88563 0.95792 0.98612 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.96 71.98 0.64 -1.36 16 2 C -0.09 -1.28 2.39 -10.79 -0.03 -1.31 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16 5 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 6 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 7 C -0.11 -2.26 5.43 30.59 0.17 -2.09 16 8 C 0.09 1.88 1.97 44.92 0.09 1.97 16 9 H 0.03 0.65 7.80 -2.39 -0.02 0.63 16 10 N -0.68 -14.74 6.31 -491.56 -3.10 -17.84 16 11 C 0.09 2.49 4.77 86.30 0.41 2.90 16 12 C -0.12 -3.26 4.51 29.85 0.13 -3.13 16 13 C 0.49 20.97 7.67 87.66 0.67 21.64 16 14 O -0.60 -32.37 15.56 -3.05 -0.05 -32.42 16 15 N -0.61 -26.50 2.86 -851.11 -2.43 -28.93 16 16 C 0.08 2.32 10.24 127.77 1.31 3.63 16 17 C 0.26 14.29 5.16 85.64 0.44 14.73 16 18 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 19 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 20 C 0.01 0.33 5.46 84.66 0.46 0.79 16 21 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 22 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.75 6.21 -2.39 -0.01 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.04 1.00 7.45 -2.39 -0.02 0.98 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.35 6.18 6.17 -89.69 -0.55 5.62 16 38 H 0.02 0.61 8.01 -2.39 -0.02 0.59 16 39 H 0.05 1.82 7.39 -2.38 -0.02 1.80 16 40 H 0.12 2.84 7.40 -2.39 -0.02 2.83 16 41 H 0.12 2.50 8.11 -2.39 -0.02 2.48 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 44 H 0.10 2.15 6.44 -2.39 -0.02 2.14 16 45 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 46 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 47 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -74.87 366.10 2.16 -72.71 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.36 Total: 14.34 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.07 Total: 1.35 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -5.25 Total: -103.79 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -74.87 2.16 -72.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.400 kcal (2) G-P(sol) polarization free energy of solvation -74.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds