Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46903 * 111.00285 * 2 1 4 4 C 1.50704 * 109.46844 * 293.95260 * 3 2 1 5 5 H 1.07996 * 120.00079 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99889 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00228 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00089 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46673 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46918 * 120.00006 * 8 6 4 11 11 H 1.48500 * 109.46964 * 240.00073 * 8 6 4 12 12 C 1.46900 * 111.00103 * 123.95323 * 2 1 3 13 13 C 1.53001 * 109.47124 * 66.04719 * 12 2 1 14 14 H 1.09000 * 109.46733 * 304.99806 * 13 12 2 15 15 O 1.42892 * 109.47471 * 64.99786 * 13 12 2 16 16 C 1.53000 * 109.47264 * 185.00321 * 13 12 2 17 17 N 1.46900 * 109.47239 * 179.97438 * 16 13 12 18 18 C 1.46902 * 110.99869 * 179.97438 * 17 16 13 19 19 C 1.53004 * 109.47135 * 180.02562 * 18 17 16 20 20 N 1.46494 * 109.47106 * 179.97438 * 19 18 17 21 21 C 1.34954 * 126.03475 * 124.99860 * 20 19 18 22 22 C 1.35316 * 107.74368 * 179.73518 * 21 20 19 23 23 C 1.39868 * 107.92272 * 0.02562 * 22 21 20 24 24 N 1.30837 * 108.20148 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47337 * 296.05084 * 1 2 3 26 26 H 1.08998 * 109.47040 * 56.04688 * 1 2 3 27 27 H 1.09000 * 109.47449 * 176.04841 * 1 2 3 28 28 H 1.08995 * 109.46760 * 53.94995 * 3 2 1 29 29 H 1.09000 * 109.47037 * 173.95306 * 3 2 1 30 30 H 0.96994 * 120.00351 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46911 * 306.04421 * 12 2 1 32 32 H 1.08998 * 109.47436 * 186.04390 * 12 2 1 33 33 H 0.96707 * 113.99741 * 60.00219 * 15 13 12 34 34 H 1.09002 * 109.47309 * 59.99244 * 16 13 12 35 35 H 1.09000 * 109.46847 * 299.99983 * 16 13 12 36 36 H 1.00895 * 110.99641 * 303.94711 * 17 16 13 37 37 H 1.09002 * 109.47301 * 59.99666 * 18 17 16 38 38 H 1.08998 * 109.47005 * 300.00204 * 18 17 16 39 39 H 1.08999 * 109.46666 * 59.99578 * 19 18 17 40 40 H 1.09007 * 109.46675 * 299.99950 * 19 18 17 41 41 H 1.07999 * 126.12395 * 359.71501 * 21 20 19 42 42 H 1.07999 * 126.03437 * 179.97438 * 22 21 20 43 43 H 1.08001 * 125.89990 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3494 -1.5286 7 7 2.7120 4.0019 -0.6151 8 14 1.5819 4.1872 -3.1378 9 1 0.8137 3.2448 -3.9905 10 1 0.7543 5.3882 -2.8583 11 1 2.8233 4.5947 -3.8435 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9703 14 1 0.5531 -2.3388 0.8433 15 8 2.2955 -2.7696 -0.1799 16 6 2.0699 -3.0199 2.2131 17 7 1.7199 -4.4376 2.0528 18 6 2.1274 -5.2167 3.2296 19 6 1.7477 -6.6848 3.0257 20 7 2.1546 -7.4619 4.1990 21 6 1.3532 -8.2493 4.9467 22 6 2.1090 -8.7930 5.9286 23 6 3.4169 -8.3212 5.7762 24 7 3.4454 -7.5235 4.7396 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5611 1.9273 0.8309 29 1 3.0797 1.3443 0.1083 30 1 2.9866 4.9179 -0.7770 31 1 1.5611 -0.3872 2.0628 32 1 3.0796 -0.6611 1.1756 33 1 3.2601 -2.7167 -0.1359 34 1 1.5633 -2.6179 3.0906 35 1 3.1481 -2.9236 2.3402 36 1 0.7339 -4.5480 1.8694 37 1 1.6219 -4.8298 4.1144 38 1 3.2061 -5.1359 3.3631 39 1 2.2535 -7.0713 2.1410 40 1 0.6689 -6.7658 2.8920 41 1 0.2977 -8.4155 4.7896 42 1 1.7632 -9.4707 6.6951 43 1 4.2580 -8.5722 6.4055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565476822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = 38.287913 kcal Electronic energy + Delta-G solvation = -21326.131315 eV Core-core repulsion = 18022.417145 eV Total energy + Delta-G solvation = -3303.714170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40318 -38.38584 -36.53256 -35.29136 -33.36080 -32.51475 -30.59201 -29.97484 -28.11526 -27.01436 -25.66447 -23.75389 -22.81023 -21.45613 -21.33280 -20.72838 -20.16657 -17.59021 -16.83630 -16.47869 -15.77560 -15.68921 -15.03524 -14.97501 -14.76863 -14.51187 -14.28394 -13.93202 -13.67631 -13.49593 -13.13764 -13.00078 -12.84706 -12.33068 -12.06948 -11.90519 -11.63623 -11.34049 -11.11663 -10.90800 -10.90648 -10.77253 -10.66060 -10.30222 -9.99446 -9.75763 -9.57912 -9.11150 -8.91086 -8.70067 -8.44186 -7.21114 -6.02933 -4.03908 1.59340 2.15049 2.55691 3.31405 3.38695 3.44331 3.76732 4.18917 4.42400 4.51283 4.56600 4.65663 4.79239 4.83542 4.89909 5.11305 5.16222 5.26616 5.33289 5.40363 5.47037 5.51125 5.56085 5.60331 5.67026 5.69921 6.02963 6.16345 6.27245 6.33196 6.38031 6.61060 6.70041 6.74278 7.05979 7.26395 7.31520 7.40458 7.80345 8.03576 8.13003 8.19996 8.54697 9.04445 9.60380 11.08084 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.055780 B = 0.002180 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.847214 B =12839.695120 C =12987.340628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.093 0.907 15 O -0.536 6.536 16 C 0.028 3.972 17 N -0.675 5.675 18 C 0.049 3.951 19 C 0.135 3.865 20 N -0.370 5.370 21 C 0.052 3.948 22 C -0.278 4.278 23 C 0.041 3.959 24 N -0.293 5.293 25 H 0.008 0.992 26 H 0.075 0.925 27 H 0.046 0.954 28 H -0.011 1.011 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.369 0.631 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.341 0.659 37 H 0.032 0.968 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.173 0.827 42 H 0.146 0.854 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 -23.415 12.513 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.105 4.105 13 C 0.057 3.943 14 H 0.111 0.889 15 O -0.340 6.340 16 C -0.102 4.102 17 N -0.306 5.306 18 C -0.081 4.081 19 C 0.013 3.987 20 N -0.153 5.153 21 C -0.094 4.094 22 C -0.307 4.307 23 C -0.145 4.145 24 N -0.114 5.114 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.007 0.993 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.216 0.784 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.190 0.810 42 H 0.164 0.836 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.598 -22.876 10.694 25.386 hybrid contribution -1.117 0.893 1.527 2.092 sum -3.715 -21.983 12.221 25.424 Atomic orbital electron populations 1.22259 0.89087 0.99495 1.00424 1.62021 1.06752 1.17469 1.39107 1.19753 0.95316 0.81567 0.96647 1.21210 1.34610 0.96825 1.01681 0.91705 1.25010 0.95346 0.97382 0.97062 1.69970 1.38561 1.11407 1.34073 0.86426 0.78164 0.79245 0.83506 1.19601 1.21169 1.20993 1.22725 1.00655 0.93812 0.93340 1.21870 0.97553 0.90710 0.84207 0.88941 1.86583 1.23028 1.83858 1.40487 1.22742 1.01883 0.87283 0.98257 1.60252 1.23539 1.09387 1.37452 1.22159 1.02713 0.91407 0.91799 1.21662 1.00727 0.90995 0.85283 1.48717 1.06379 1.36156 1.24002 1.22609 0.97962 0.95196 0.93652 1.21526 0.93874 1.10629 1.04689 1.23926 0.98194 0.96245 0.96106 1.77393 0.99001 1.22354 1.12672 0.97395 0.90609 0.93540 0.99330 0.95322 0.93008 0.95554 0.91044 0.78429 0.94478 0.90383 0.84102 0.94996 0.89466 0.88516 0.88714 0.81013 0.83594 0.80074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.48 4.70 -244.38 -1.15 -12.63 16 3 C 0.19 5.05 4.72 -4.97 -0.02 5.03 16 4 C -0.50 -14.36 8.46 -34.44 -0.29 -14.65 16 5 H 0.06 1.84 7.12 -52.49 -0.37 1.47 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 C 0.02 0.42 4.60 -3.82 -0.02 0.40 16 13 C 0.12 1.63 3.13 -26.73 -0.08 1.55 16 14 H 0.09 1.31 6.34 -51.93 -0.33 0.98 16 15 O -0.54 -8.35 13.15 -35.23 -0.46 -8.81 16 16 C 0.03 0.32 5.35 -3.82 -0.02 0.30 16 17 N -0.68 -6.64 6.37 -113.77 -0.72 -7.36 16 18 C 0.05 0.45 5.88 -3.82 -0.02 0.42 16 19 C 0.13 1.03 6.77 -4.04 -0.03 1.00 16 20 N -0.37 -3.43 3.68 -61.36 -0.23 -3.66 16 21 C 0.05 0.39 11.45 -17.22 -0.20 0.19 16 22 C -0.28 -2.12 10.80 -40.01 -0.43 -2.55 16 23 C 0.04 0.37 12.03 -17.37 -0.21 0.16 16 24 N -0.29 -3.28 12.42 30.62 0.38 -2.90 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 26 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 27 H 0.05 0.78 6.37 -51.93 -0.33 0.45 16 28 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 29 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.37 4.86 9.05 45.56 0.41 5.28 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.34 2.95 8.73 -39.29 -0.34 2.61 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.48 8.07 -51.92 -0.42 0.06 16 41 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -33.73 358.12 -8.28 -42.02 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.34 Total: 2.80 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.87 Total: -5.47 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.98 Total: -52.76 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.46 Total: -8.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.73 -8.28 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565476822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.305 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds