Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46903 * 111.00285 * 2 1 4 4 C 1.50704 * 109.46844 * 293.95260 * 3 2 1 5 5 H 1.07996 * 120.00079 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99889 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00228 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00089 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46673 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46918 * 120.00006 * 8 6 4 11 11 H 1.48500 * 109.46964 * 240.00073 * 8 6 4 12 12 C 1.46900 * 111.00103 * 123.95323 * 2 1 3 13 13 C 1.53001 * 109.47124 * 66.04719 * 12 2 1 14 14 H 1.09000 * 109.46733 * 304.99806 * 13 12 2 15 15 O 1.42892 * 109.47471 * 64.99786 * 13 12 2 16 16 C 1.53000 * 109.47264 * 185.00321 * 13 12 2 17 17 N 1.46900 * 109.47239 * 179.97438 * 16 13 12 18 18 C 1.46902 * 110.99869 * 179.97438 * 17 16 13 19 19 C 1.53004 * 109.47135 * 180.02562 * 18 17 16 20 20 N 1.46494 * 109.47106 * 179.97438 * 19 18 17 21 21 C 1.34954 * 126.03475 * 124.99860 * 20 19 18 22 22 C 1.35316 * 107.74368 * 179.73518 * 21 20 19 23 23 C 1.39868 * 107.92272 * 0.02562 * 22 21 20 24 24 N 1.30837 * 108.20148 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47337 * 296.05084 * 1 2 3 26 26 H 1.08998 * 109.47040 * 56.04688 * 1 2 3 27 27 H 1.09000 * 109.47449 * 176.04841 * 1 2 3 28 28 H 1.08995 * 109.46760 * 53.94995 * 3 2 1 29 29 H 1.09000 * 109.47037 * 173.95306 * 3 2 1 30 30 H 0.96994 * 120.00351 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46911 * 306.04421 * 12 2 1 32 32 H 1.08998 * 109.47436 * 186.04390 * 12 2 1 33 33 H 0.96707 * 113.99741 * 60.00219 * 15 13 12 34 34 H 1.09002 * 109.47309 * 59.99244 * 16 13 12 35 35 H 1.09000 * 109.46847 * 299.99983 * 16 13 12 36 36 H 1.00895 * 110.99641 * 303.94711 * 17 16 13 37 37 H 1.09002 * 109.47301 * 59.99666 * 18 17 16 38 38 H 1.08998 * 109.47005 * 300.00204 * 18 17 16 39 39 H 1.08999 * 109.46666 * 59.99578 * 19 18 17 40 40 H 1.09007 * 109.46675 * 299.99950 * 19 18 17 41 41 H 1.07999 * 126.12395 * 359.71501 * 21 20 19 42 42 H 1.07999 * 126.03437 * 179.97438 * 22 21 20 43 43 H 1.08001 * 125.89990 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3494 -1.5286 7 7 2.7120 4.0019 -0.6151 8 14 1.5819 4.1872 -3.1378 9 1 0.8137 3.2448 -3.9905 10 1 0.7543 5.3882 -2.8583 11 1 2.8233 4.5947 -3.8435 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9703 14 1 0.5531 -2.3388 0.8433 15 8 2.2955 -2.7696 -0.1799 16 6 2.0699 -3.0199 2.2131 17 7 1.7199 -4.4376 2.0528 18 6 2.1274 -5.2167 3.2296 19 6 1.7477 -6.6848 3.0257 20 7 2.1546 -7.4619 4.1990 21 6 1.3532 -8.2493 4.9467 22 6 2.1090 -8.7930 5.9286 23 6 3.4169 -8.3212 5.7762 24 7 3.4454 -7.5235 4.7396 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5611 1.9273 0.8309 29 1 3.0797 1.3443 0.1083 30 1 2.9866 4.9179 -0.7770 31 1 1.5611 -0.3872 2.0628 32 1 3.0796 -0.6611 1.1756 33 1 3.2601 -2.7167 -0.1359 34 1 1.5633 -2.6179 3.0906 35 1 3.1481 -2.9236 2.3402 36 1 0.7339 -4.5480 1.8694 37 1 1.6219 -4.8298 4.1144 38 1 3.2061 -5.1359 3.3631 39 1 2.2535 -7.0713 2.1410 40 1 0.6689 -6.7658 2.8920 41 1 0.2977 -8.4155 4.7896 42 1 1.7632 -9.4707 6.6951 43 1 4.2580 -8.5722 6.4055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565476822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = 10.480060 kcal Electronic energy + Delta-G solvation = -21327.337154 eV Core-core repulsion = 18022.417145 eV Total energy + Delta-G solvation = -3304.920009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99472 -39.62133 -37.71416 -36.57282 -34.62600 -34.09645 -31.46668 -30.88460 -29.42808 -28.60581 -27.06509 -25.18096 -23.68298 -22.77384 -21.92973 -21.80109 -21.36724 -18.58889 -18.18566 -17.72449 -17.04000 -16.88289 -16.49794 -16.00737 -15.86948 -15.63219 -15.42554 -15.07654 -14.86081 -14.50027 -14.34873 -13.85974 -13.85191 -13.55469 -13.34397 -13.25426 -12.89579 -12.76278 -12.61239 -12.53705 -12.39073 -12.32638 -12.00499 -11.63936 -11.52841 -11.38710 -10.71161 -10.63861 -10.37928 -9.52608 -9.47909 -8.97301 -8.22122 -6.32088 1.00680 1.40085 1.41083 1.54999 1.58555 1.97676 2.39366 2.88118 3.10305 3.39642 3.59748 3.71572 3.90628 3.95214 4.07317 4.10171 4.17606 4.30221 4.31797 4.39010 4.51805 4.55663 4.64081 4.71793 4.73919 4.77700 4.88472 4.94381 5.05386 5.13097 5.15984 5.17326 5.30216 5.63639 5.72749 5.82942 6.03817 6.16066 6.30702 6.35849 6.62243 6.79469 6.84441 7.01378 7.37756 8.89079 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.055780 B = 0.002180 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.847214 B =12839.695120 C =12987.340628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.062 0.938 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.023 3.977 13 C 0.131 3.869 14 H 0.097 0.903 15 O -0.553 6.553 16 C 0.040 3.960 17 N -0.677 5.677 18 C 0.061 3.939 19 C 0.137 3.863 20 N -0.380 5.380 21 C 0.053 3.947 22 C -0.289 4.289 23 C 0.032 3.968 24 N -0.343 5.343 25 H 0.011 0.989 26 H 0.055 0.945 27 H 0.079 0.921 28 H -0.039 1.039 29 H 0.003 0.997 30 H 0.264 0.736 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.378 0.622 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.351 0.649 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.208 0.792 42 H 0.168 0.832 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 -24.867 12.373 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.106 4.106 13 C 0.071 3.929 14 H 0.115 0.885 15 O -0.358 6.358 16 C -0.091 4.091 17 N -0.309 5.309 18 C -0.069 4.069 19 C 0.016 3.984 20 N -0.164 5.164 21 C -0.093 4.093 22 C -0.318 4.318 23 C -0.153 4.153 24 N -0.165 5.165 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.098 0.902 28 H -0.021 1.021 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.226 0.774 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.171 0.829 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.145 0.855 41 H 0.225 0.775 42 H 0.185 0.815 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.193 -24.359 10.565 26.880 hybrid contribution -0.616 1.278 1.640 2.168 sum -4.809 -23.081 12.205 26.548 Atomic orbital electron populations 1.22251 0.87722 1.01255 0.99698 1.61932 1.08096 1.14844 1.41613 1.19400 0.93605 0.83970 0.94954 1.21506 1.34727 0.97452 1.02385 0.91979 1.25946 0.95051 0.98096 1.00808 1.70089 1.39443 1.11898 1.36166 0.85305 0.78090 0.78149 0.78894 1.18769 1.20309 1.20380 1.22842 1.00269 0.95490 0.92002 1.21729 0.97611 0.88505 0.85068 0.88504 1.86546 1.24009 1.83800 1.41431 1.22513 1.01774 0.87889 0.96889 1.60168 1.24400 1.08431 1.37913 1.21988 1.01199 0.92430 0.91329 1.21703 1.02466 0.89579 0.84662 1.48852 1.06153 1.36801 1.24547 1.23261 0.99356 0.93895 0.92772 1.21897 0.93396 1.11044 1.05439 1.24412 0.99626 0.95579 0.95694 1.77332 1.00730 1.24214 1.14235 0.97013 0.92642 0.90217 1.02130 0.97924 0.92678 0.94988 0.91585 0.77411 0.93636 0.90687 0.82940 0.95077 0.91794 0.89324 0.85525 0.77533 0.81488 0.78257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.14 127.69 1.17 2.67 16 2 N -0.54 -23.52 4.70 -927.07 -4.36 -27.88 16 3 C 0.21 11.21 4.72 85.56 0.40 11.62 16 4 C -0.52 -30.19 8.46 25.60 0.22 -29.97 16 5 H 0.06 3.55 7.12 -2.91 -0.02 3.53 16 6 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 7 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16 8 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 9 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.02 0.79 4.60 86.30 0.40 1.19 16 13 C 0.13 3.46 3.13 30.59 0.10 3.56 16 14 H 0.10 2.49 6.34 -2.39 -0.02 2.48 16 15 O -0.55 -16.51 13.15 -148.98 -1.96 -18.47 16 16 C 0.04 0.82 5.35 86.30 0.46 1.28 16 17 N -0.68 -12.07 6.37 -513.87 -3.27 -15.34 16 18 C 0.06 1.03 5.88 86.30 0.51 1.53 16 19 C 0.14 1.86 6.77 86.38 0.58 2.44 16 20 N -0.38 -6.56 3.68 -348.05 -1.28 -7.84 16 21 C 0.05 0.67 11.45 83.54 0.96 1.62 16 22 C -0.29 -3.87 10.80 21.99 0.24 -3.64 16 23 C 0.03 0.55 12.03 85.24 1.02 1.57 16 24 N -0.34 -7.63 12.42 -57.02 -0.71 -8.34 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 27 H 0.08 2.52 6.37 -2.39 -0.02 2.50 16 28 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 29 H 0.00 0.15 7.93 -2.39 -0.02 0.14 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 32 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 33 H 0.38 9.69 9.05 -74.05 -0.67 9.02 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.35 5.14 8.73 -89.70 -0.78 4.35 16 37 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.13 0.87 8.07 -2.38 -0.02 0.85 16 41 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -73.66 358.12 -3.21 -76.86 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.45 Total: 16.43 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 6.51 Total: -5.74 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -9.33 Total: -115.99 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.96 Total: -18.47 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.66 -3.21 -76.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565476822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.340 kcal (2) G-P(sol) polarization free energy of solvation -73.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds