Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46876 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47333 * 119.99985 * 8 6 4 11 11 H 1.48500 * 109.46975 * 240.00330 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 N 1.46502 * 109.46871 * 179.97438 * 19 18 17 21 21 C 1.36875 * 126.39600 * 89.99757 * 20 19 18 22 22 C 1.34670 * 106.82075 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.01772 * 0.02562 * 22 21 20 24 24 C 1.30508 * 109.25299 * 359.72226 * 23 22 21 25 25 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 26 26 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 27 27 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 28 28 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 29 29 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 30 30 H 0.97003 * 120.00087 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 32 32 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 33 33 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 34 34 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 35 35 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 36 36 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 37 37 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 38 38 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 39 39 H 1.08995 * 109.46615 * 299.99641 * 19 18 17 40 40 H 1.08996 * 109.46939 * 60.00272 * 19 18 17 41 41 H 1.08008 * 126.59588 * 359.96764 * 21 20 19 42 42 H 1.08000 * 125.99867 * 180.02562 * 22 21 20 43 43 H 1.08001 * 125.64570 * 180.29174 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6148 8 14 1.5820 4.1874 -3.1376 9 1 0.8138 3.2450 -3.9905 10 1 0.7545 5.3882 -2.8582 11 1 2.8234 4.5949 -3.8432 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7488 -6.6852 3.0247 20 7 2.1548 -7.4622 4.1985 21 6 1.3985 -7.7046 5.3133 22 6 2.1518 -8.4552 6.1396 23 7 3.3360 -8.6649 5.5457 24 6 3.3429 -8.0777 4.3802 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3443 0.1083 30 1 2.9866 4.9180 -0.7768 31 1 1.5611 -0.3874 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 3.2602 -2.7167 -0.1361 34 1 1.5633 -2.6181 3.0905 35 1 3.1482 -2.9237 2.3401 36 1 2.1268 -4.8168 1.2096 37 1 3.2060 -5.1356 3.3641 38 1 1.6206 -4.8304 4.1135 39 1 0.6704 -6.7668 2.8897 40 1 2.2561 -7.0714 2.1407 41 1 0.3912 -7.3599 5.4955 42 1 1.8546 -8.8237 7.1103 43 1 4.1638 -8.0816 3.6784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576149311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = 19.973306 kcal Electronic energy + Delta-G solvation = -21363.348079 eV Core-core repulsion = 18058.839728 eV Total energy + Delta-G solvation = -3304.508351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.32587 -38.55198 -36.68622 -35.47896 -33.89052 -32.55945 -30.50541 -29.72993 -28.36096 -27.05301 -25.74517 -23.79842 -22.82062 -21.64521 -21.48385 -21.05975 -20.23049 -17.79729 -16.89056 -16.48047 -16.13596 -15.60479 -15.41082 -14.94255 -14.75514 -14.66036 -14.25998 -14.13302 -13.84850 -13.71308 -13.48628 -13.15887 -12.85945 -12.54626 -12.18992 -11.95827 -11.75757 -11.38714 -11.18293 -10.92716 -10.81526 -10.69835 -10.35789 -10.29799 -10.11965 -9.96782 -9.67695 -9.15582 -8.85850 -8.82588 -8.46897 -7.24875 -6.05704 -4.06734 1.72804 2.36480 2.88472 3.29324 3.36718 3.42165 3.76233 4.17415 4.39386 4.40970 4.42190 4.55235 4.61192 4.75410 4.80278 5.01179 5.07127 5.15526 5.23717 5.28189 5.31219 5.40363 5.42583 5.54805 5.63711 5.93519 5.99368 6.14263 6.25763 6.33529 6.41427 6.53454 6.73975 6.83589 7.00284 7.22666 7.28666 7.76302 7.76750 7.85486 8.05459 8.15970 8.51438 9.01611 9.57662 11.05294 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.055507 B = 0.002174 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.322883 B =12877.155261 C =12938.826970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.546 6.546 16 C 0.029 3.971 17 N -0.681 5.681 18 C 0.045 3.955 19 C 0.106 3.894 20 N -0.457 5.457 21 C -0.054 4.054 22 C -0.033 4.033 23 N -0.497 5.497 24 C 0.180 3.820 25 H 0.009 0.991 26 H 0.075 0.925 27 H 0.048 0.952 28 H -0.011 1.011 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.367 0.633 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.350 0.650 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.174 0.826 42 H 0.169 0.831 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 -21.216 9.591 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.350 6.350 16 C -0.101 4.101 17 N -0.314 5.314 18 C -0.085 4.085 19 C -0.018 4.018 20 N -0.140 5.140 21 C -0.187 4.187 22 C -0.181 4.181 23 N -0.215 5.215 24 C -0.103 4.103 25 H 0.027 0.973 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.213 0.787 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.170 0.830 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.191 0.809 42 H 0.186 0.814 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.131 -21.653 9.424 23.711 hybrid contribution 0.429 1.695 -0.175 1.758 sum -1.702 -19.957 9.249 22.062 Atomic orbital electron populations 1.22268 0.88924 0.99649 1.00481 1.62033 1.06902 1.17474 1.39004 1.19749 0.95243 0.81588 0.96696 1.21205 1.34645 0.96841 1.01675 0.91706 1.25010 0.95332 0.97376 0.97077 1.69971 1.38539 1.11417 1.34067 0.86423 0.78162 0.79274 0.83471 1.19597 1.21135 1.21009 1.22705 1.00441 0.93759 0.93590 1.22003 0.98365 0.90812 0.83420 0.87699 1.86617 1.22863 1.83770 1.41716 1.22702 0.98812 0.88145 1.00417 1.60267 1.64237 1.02465 1.04441 1.22256 0.98885 0.92039 0.95367 1.21849 1.03160 0.90730 0.86012 1.45552 1.13615 1.39160 1.15654 1.22797 0.99840 1.06949 0.89100 1.22330 0.91149 1.03375 1.01239 1.70305 1.22317 1.22784 1.06144 1.25033 0.89843 0.98060 0.97336 0.97275 0.90624 0.93381 0.99280 0.95414 0.92993 0.95291 0.91270 0.78711 0.90157 0.94696 0.83030 0.94517 0.90326 0.87909 0.88722 0.80873 0.81406 0.78055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.14 60.06 0.55 1.23 16 2 N -0.53 -11.22 4.70 -244.38 -1.15 -12.37 16 3 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16 4 C -0.51 -14.19 8.46 -34.44 -0.29 -14.48 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 6 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.02 0.41 4.60 -3.82 -0.02 0.39 16 13 C 0.11 1.49 3.19 -26.73 -0.09 1.41 16 14 H 0.11 1.50 6.34 -51.93 -0.33 1.17 16 15 O -0.55 -7.50 12.62 -35.23 -0.44 -7.95 16 16 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 17 N -0.68 -5.78 6.50 -113.78 -0.74 -6.52 16 18 C 0.04 0.31 6.01 -3.82 -0.02 0.29 16 19 C 0.11 0.60 6.41 -4.04 -0.03 0.57 16 20 N -0.46 -3.44 2.75 -118.57 -0.33 -3.76 16 21 C -0.05 -0.42 11.58 -16.56 -0.19 -0.61 16 22 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 23 N -0.50 -5.56 11.25 -14.66 -0.16 -5.72 16 24 C 0.18 1.55 12.56 -90.37 -1.14 0.41 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 27 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 28 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 29 H 0.03 0.76 7.93 -51.92 -0.41 0.35 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.37 3.97 9.05 45.56 0.41 4.38 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.35 2.83 8.12 -39.29 -0.32 2.51 16 37 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.17 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -33.38 356.70 -9.63 -43.01 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.32 Total: 1.94 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.57 Total: -4.67 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -1.64 Total: -54.31 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.44 Total: -7.95 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.38 -9.63 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576149311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.986 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds