Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46876 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47333 * 119.99985 * 8 6 4 11 11 H 1.48500 * 109.46975 * 240.00330 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 N 1.46502 * 109.46871 * 179.97438 * 19 18 17 21 21 C 1.36875 * 126.39600 * 89.99757 * 20 19 18 22 22 C 1.34670 * 106.82075 * 179.97438 * 21 20 19 23 23 N 1.34134 * 108.01772 * 0.02562 * 22 21 20 24 24 C 1.30508 * 109.25299 * 359.72226 * 23 22 21 25 25 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 26 26 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 27 27 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 28 28 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 29 29 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 30 30 H 0.97003 * 120.00087 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 32 32 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 33 33 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 34 34 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 35 35 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 36 36 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 37 37 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 38 38 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 39 39 H 1.08995 * 109.46615 * 299.99641 * 19 18 17 40 40 H 1.08996 * 109.46939 * 60.00272 * 19 18 17 41 41 H 1.08008 * 126.59588 * 359.96764 * 21 20 19 42 42 H 1.08000 * 125.99867 * 180.02562 * 22 21 20 43 43 H 1.08001 * 125.64570 * 180.29174 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6148 8 14 1.5820 4.1874 -3.1376 9 1 0.8138 3.2450 -3.9905 10 1 0.7545 5.3882 -2.8582 11 1 2.8234 4.5949 -3.8432 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7488 -6.6852 3.0247 20 7 2.1548 -7.4622 4.1985 21 6 1.3985 -7.7046 5.3133 22 6 2.1518 -8.4552 6.1396 23 7 3.3360 -8.6649 5.5457 24 6 3.3429 -8.0777 4.3802 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3443 0.1083 30 1 2.9866 4.9180 -0.7768 31 1 1.5611 -0.3874 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 3.2602 -2.7167 -0.1361 34 1 1.5633 -2.6181 3.0905 35 1 3.1482 -2.9237 2.3401 36 1 2.1268 -4.8168 1.2096 37 1 3.2060 -5.1356 3.3641 38 1 1.6206 -4.8304 4.1135 39 1 0.6704 -6.7668 2.8897 40 1 2.2561 -7.0714 2.1407 41 1 0.3912 -7.3599 5.4955 42 1 1.8546 -8.8237 7.1103 43 1 4.1638 -8.0816 3.6784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576149311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = -5.727806 kcal Electronic energy + Delta-G solvation = -21364.462563 eV Core-core repulsion = 18058.839728 eV Total energy + Delta-G solvation = -3305.622835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.92123 -39.67522 -37.76163 -36.66956 -34.63241 -34.58570 -31.53218 -30.39303 -29.55257 -28.68380 -27.11007 -25.17039 -23.59796 -22.70056 -22.25583 -21.83728 -21.64583 -18.60730 -18.35044 -17.63133 -17.22497 -16.74510 -16.56723 -16.11491 -15.95888 -15.58736 -15.36307 -15.20334 -14.87492 -14.62188 -14.51393 -14.06815 -13.85980 -13.69527 -13.64526 -13.20789 -12.96796 -12.75219 -12.58327 -12.53068 -12.38574 -12.32814 -12.01416 -11.63684 -11.41078 -10.96395 -10.82817 -10.63744 -10.53771 -9.51727 -9.44681 -8.97607 -8.22150 -6.31901 1.14061 1.40395 1.41065 1.54968 1.82596 2.22915 2.39442 2.94387 3.10481 3.43043 3.66495 3.73313 3.87927 3.89492 4.00361 4.08643 4.12768 4.25657 4.33708 4.40510 4.50363 4.55316 4.63203 4.67182 4.72928 4.78611 4.80848 4.82993 5.05702 5.14621 5.16591 5.31478 5.35668 5.63937 5.80408 5.84596 6.04056 6.27393 6.30703 6.37671 6.62461 6.84581 6.94697 7.14597 7.37961 8.88964 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.055507 B = 0.002174 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.322883 B =12877.155261 C =12938.826970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.062 0.938 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.023 3.977 13 C 0.129 3.871 14 H 0.097 0.903 15 O -0.559 6.559 16 C 0.041 3.959 17 N -0.682 5.682 18 C 0.053 3.947 19 C 0.111 3.889 20 N -0.455 5.455 21 C -0.051 4.051 22 C -0.060 4.060 23 N -0.541 5.541 24 C 0.173 3.827 25 H 0.011 0.989 26 H 0.054 0.946 27 H 0.078 0.922 28 H -0.040 1.040 29 H 0.004 0.996 30 H 0.264 0.736 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.380 0.620 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.355 0.645 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.198 0.802 42 H 0.178 0.822 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -22.163 8.747 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.106 4.106 13 C 0.069 3.931 14 H 0.115 0.885 15 O -0.365 6.365 16 C -0.090 4.090 17 N -0.315 5.315 18 C -0.078 4.078 19 C -0.011 4.011 20 N -0.138 5.138 21 C -0.184 4.184 22 C -0.207 4.207 23 N -0.260 5.260 24 C -0.109 4.109 25 H 0.029 0.971 26 H 0.073 0.927 27 H 0.097 0.903 28 H -0.022 1.022 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.175 0.825 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.215 0.785 42 H 0.196 0.804 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.792 -22.625 8.584 24.360 hybrid contribution 0.646 1.949 0.129 2.057 sum -2.146 -20.676 8.714 22.540 Atomic orbital electron populations 1.22245 0.87812 1.01213 0.99644 1.61942 1.08009 1.14840 1.41629 1.19397 0.93634 0.83997 0.94897 1.21506 1.34691 0.97450 1.02404 0.92012 1.25933 0.95070 0.98098 1.00757 1.70088 1.39450 1.11893 1.36128 0.85318 0.78089 0.78154 0.78963 1.18786 1.20403 1.20351 1.22846 1.00231 0.95520 0.92038 1.21773 0.97900 0.88625 0.84755 0.88491 1.86579 1.24157 1.83550 1.42170 1.22474 0.99217 0.88782 0.98501 1.60202 1.64436 1.01684 1.05203 1.22169 0.98653 0.92582 0.94354 1.21894 1.03789 0.89588 0.85866 1.45662 1.13265 1.38877 1.15980 1.23195 1.00587 1.05962 0.88700 1.22674 0.91258 1.04509 1.02278 1.70261 1.23601 1.24457 1.07660 1.25531 0.90745 0.97509 0.97134 0.97067 0.92693 0.90315 1.02191 0.97795 0.92688 0.94997 0.91414 0.77227 0.90038 0.93906 0.82512 0.94629 0.91122 0.87211 0.86908 0.78509 0.80435 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.14 127.69 1.17 2.66 16 2 N -0.54 -22.87 4.70 -927.07 -4.36 -27.23 16 3 C 0.21 10.99 4.72 85.56 0.40 11.39 16 4 C -0.52 -29.73 8.46 25.60 0.22 -29.51 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 7 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 8 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 9 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.02 0.74 4.60 86.31 0.40 1.14 16 13 C 0.13 3.16 3.19 30.59 0.10 3.25 16 14 H 0.10 2.56 6.34 -2.39 -0.02 2.54 16 15 O -0.56 -14.24 12.62 -148.98 -1.88 -16.12 16 16 C 0.04 0.72 5.39 86.30 0.47 1.18 16 17 N -0.68 -9.74 6.50 -513.88 -3.34 -13.08 16 18 C 0.05 0.60 6.01 86.30 0.52 1.12 16 19 C 0.11 0.95 6.41 86.38 0.55 1.50 16 20 N -0.46 -5.94 2.75 -529.06 -1.46 -7.40 16 21 C -0.05 -0.72 11.58 83.09 0.96 0.25 16 22 C -0.06 -1.10 11.87 83.52 0.99 -0.11 16 23 N -0.54 -11.87 11.25 -200.30 -2.25 -14.13 16 24 C 0.17 2.75 12.56 180.26 2.26 5.02 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.05 2.30 6.76 -2.39 -0.02 2.29 16 27 H 0.08 2.51 6.37 -2.38 -0.02 2.49 16 28 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 29 H 0.00 0.22 7.93 -2.38 -0.02 0.21 16 30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 32 H 0.07 2.19 7.93 -2.39 -0.02 2.17 16 33 H 0.38 7.49 9.05 -74.05 -0.67 6.82 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.36 4.68 8.12 -89.69 -0.73 3.96 16 37 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.23 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -72.35 356.70 -2.88 -75.23 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -0.40 Total: 13.92 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 8.50 Total: -1.68 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -11.12 Total: -117.69 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.88 Total: -16.12 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.35 -2.88 -75.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576149311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.501 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds