Wall clock time and date at job start Wed Apr 15 2020 11:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 110.99992 * 2 1 4 4 C 1.50695 * 109.47163 * 66.04365 * 3 2 1 5 5 H 1.08001 * 119.99957 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99878 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99804 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99966 * 359.97438 * 6 4 3 9 9 H 1.48511 * 109.46810 * 90.00269 * 8 6 4 10 10 H 1.48499 * 109.47029 * 209.99806 * 8 6 4 11 11 H 1.48489 * 109.47112 * 330.00402 * 8 6 4 12 12 C 1.46896 * 111.00256 * 236.04286 * 2 1 3 13 13 C 1.52997 * 109.47114 * 293.95380 * 12 2 1 14 14 H 1.09001 * 109.46832 * 59.99999 * 13 12 2 15 15 O 1.42895 * 109.47503 * 299.99765 * 13 12 2 16 16 C 1.53006 * 109.47127 * 179.97438 * 13 12 2 17 17 N 1.46895 * 109.47221 * 185.00300 * 16 13 12 18 18 C 1.46896 * 111.00108 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.47209 * 179.97438 * 18 17 16 20 20 C 1.39869 * 125.89856 * 94.71370 * 19 18 17 21 21 C 1.35319 * 107.91670 * 179.86417 * 20 19 18 22 22 N 1.34943 * 107.75033 * 0.39447 * 21 20 19 23 23 C 1.46498 * 126.04028 * 179.74838 * 22 21 20 24 24 N 1.30845 * 125.89874 * 275.02395 * 19 18 17 25 25 H 1.08999 * 109.47174 * 183.95746 * 1 2 3 26 26 H 1.08998 * 109.47389 * 303.95602 * 1 2 3 27 27 H 1.09008 * 109.47155 * 63.95597 * 1 2 3 28 28 H 1.08999 * 109.46856 * 186.04735 * 3 2 1 29 29 H 1.09001 * 109.46406 * 306.04373 * 3 2 1 30 30 H 0.97005 * 120.00349 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47267 * 173.95091 * 12 2 1 32 32 H 1.09004 * 109.47041 * 53.95496 * 12 2 1 33 33 H 0.96696 * 113.99976 * 300.00825 * 15 13 12 34 34 H 1.08997 * 109.47395 * 305.00572 * 16 13 12 35 35 H 1.09004 * 109.46579 * 64.99848 * 16 13 12 36 36 H 1.00910 * 110.99920 * 303.95616 * 17 16 13 37 37 H 1.09001 * 109.47414 * 300.00100 * 18 17 16 38 38 H 1.09003 * 109.46964 * 59.99930 * 18 17 16 39 39 H 1.07992 * 126.03864 * 359.97438 * 20 19 18 40 40 H 1.08010 * 126.12292 * 180.15032 * 21 20 19 41 41 H 1.09004 * 109.47268 * 269.97893 * 23 22 21 42 42 H 1.09002 * 109.46985 * 29.97796 * 23 22 21 43 43 H 1.08995 * 109.47262 * 149.97722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 1.7134 3.9394 2.6613 8 14 2.9999 4.2762 0.2308 9 1 2.0632 4.9798 -0.6819 10 1 3.8862 5.2680 0.8912 11 1 3.8238 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2427 16 6 2.1793 -3.0404 -2.1553 17 7 1.7288 -4.4351 -2.0569 18 6 2.2374 -5.2331 -3.1804 19 6 1.7563 -6.6548 -3.0452 20 6 0.6165 -7.1959 -3.6490 21 6 0.5310 -8.4967 -3.2862 22 7 1.5745 -8.7669 -2.4743 23 6 1.8663 -10.0578 -1.8463 24 7 2.3295 -7.5948 -2.3381 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3634 0.5740 0.8524 27 1 -0.3634 0.4512 -0.9234 28 1 3.0797 1.3444 -0.1083 29 1 1.5610 1.9273 -0.8310 30 1 1.9879 4.8556 2.8233 31 1 3.0797 -0.6611 -1.1755 32 1 1.5611 -0.3873 -2.0628 33 1 3.1652 -2.6770 0.2789 34 1 1.8145 -2.6055 -3.0858 35 1 3.2688 -3.0086 -2.1421 36 1 1.9995 -4.8411 -1.1736 37 1 1.8733 -4.8136 -4.1183 38 1 3.3273 -5.2166 -3.1739 39 1 -0.0723 -6.6691 -4.2926 40 1 -0.2374 -9.1929 -3.5887 41 1 1.3742 -10.1088 -0.8749 42 1 1.4985 -10.8628 -2.4826 43 1 2.9431 -10.1624 -1.7140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579702349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:55 Heat of formation + Delta-G solvation = 41.525045 kcal Electronic energy + Delta-G solvation = -21512.129694 eV Core-core repulsion = 18208.555896 eV Total energy + Delta-G solvation = -3303.573797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38754 -38.37797 -36.25271 -35.17809 -33.33467 -32.43043 -30.54020 -30.05077 -28.28192 -27.37230 -25.95553 -24.52463 -22.89774 -21.41678 -21.18143 -20.09563 -19.89522 -17.35892 -16.91242 -16.27381 -16.03434 -15.80391 -15.14651 -14.86906 -14.61884 -14.46755 -14.14104 -14.00685 -13.83213 -13.23217 -12.97908 -12.85773 -12.73116 -12.48722 -12.27217 -12.18334 -11.87548 -11.57003 -11.20382 -10.93995 -10.85593 -10.68501 -10.66046 -10.22246 -9.89064 -9.65026 -9.49826 -9.19290 -8.81299 -8.54956 -8.52907 -7.29533 -6.01776 -3.98669 1.61656 2.23169 2.51514 3.29397 3.36932 3.38552 4.03691 4.22567 4.44149 4.50139 4.65197 4.67921 4.77402 4.85365 4.99207 5.02184 5.18610 5.23984 5.29072 5.32736 5.47247 5.51290 5.60415 5.64930 5.71163 5.81445 5.99307 6.18026 6.28816 6.36483 6.39068 6.73407 6.75165 6.83308 6.88122 7.03605 7.25986 7.47879 7.62820 7.94098 7.97497 8.13664 8.70246 9.08335 9.59828 11.11453 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.043733 B = 0.002445 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.101325 B =11450.538441 C =11592.931030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.082 0.918 6 C 0.066 3.934 7 N -0.901 5.901 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.022 3.978 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.678 5.678 18 C 0.140 3.860 19 C 0.079 3.921 20 C -0.253 4.253 21 C 0.048 3.952 22 N -0.378 5.378 23 C 0.102 3.898 24 N -0.292 5.292 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.009 0.991 28 H 0.026 0.974 29 H -0.018 1.018 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.367 0.633 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.352 0.648 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.148 0.852 40 H 0.173 0.827 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -25.983 -15.089 30.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.243 5.243 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.540 5.540 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.348 6.348 16 C -0.102 4.102 17 N -0.311 5.311 18 C 0.009 3.991 19 C -0.087 4.087 20 C -0.283 4.283 21 C -0.098 4.098 22 N -0.160 5.160 23 C -0.040 4.040 24 N -0.116 5.116 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.027 0.973 28 H 0.044 0.956 29 H 0.000 1.000 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.214 0.786 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.171 0.829 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.166 0.834 40 H 0.190 0.810 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.083 -26.479 -13.872 29.893 hybrid contribution 0.993 1.158 -1.900 2.437 sum 0.910 -25.322 -15.773 29.846 Atomic orbital electron populations 1.22294 0.88233 1.00188 1.00635 1.61849 1.07418 1.15886 1.39187 1.20207 0.95045 0.84222 0.96994 1.21050 1.35394 0.97109 1.00926 0.90035 1.24916 0.95855 0.97384 0.95343 1.69898 1.46969 1.13201 1.23916 0.86850 0.80609 0.80007 0.82160 1.20403 1.21172 1.19311 1.22763 1.00341 0.94281 0.93401 1.21960 0.99194 0.90568 0.82866 0.87739 1.86621 1.24883 1.84840 1.38481 1.22709 0.97732 0.89145 1.00596 1.60391 1.63395 1.01771 1.05585 1.20221 0.97123 0.85698 0.96018 1.22168 0.94893 0.95390 0.96287 1.21390 1.02152 0.94304 1.10451 1.22533 0.93383 0.98043 0.95808 1.48475 1.20135 1.09551 1.37860 1.21847 1.03797 0.79939 0.98372 1.77313 1.19025 0.91639 1.23624 0.92986 0.90171 0.97255 0.95597 1.00043 0.92708 0.91312 0.95143 0.78643 0.90130 0.94802 0.82852 0.89120 0.93866 0.83427 0.80983 0.90676 0.89554 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.14 60.06 0.55 1.25 16 2 N -0.52 -11.12 4.62 -244.37 -1.13 -12.25 16 3 C 0.16 3.99 3.79 -4.97 -0.02 3.98 16 4 C -0.51 -14.69 9.01 -34.44 -0.31 -15.00 16 5 H 0.08 2.59 7.37 -52.49 -0.39 2.20 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 8 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 12 C 0.02 0.36 4.62 -3.83 -0.02 0.35 16 13 C 0.11 1.63 3.07 -26.73 -0.08 1.55 16 14 H 0.10 1.62 6.55 -51.93 -0.34 1.28 16 15 O -0.54 -8.49 12.72 -35.23 -0.45 -8.94 16 16 C 0.03 0.32 5.36 -3.82 -0.02 0.30 16 17 N -0.68 -7.91 6.49 -115.06 -0.75 -8.65 16 18 C 0.14 1.44 6.24 -4.98 -0.03 1.41 16 19 C 0.08 0.90 6.73 -82.40 -0.55 0.35 16 20 C -0.25 -2.48 10.74 -40.01 -0.43 -2.91 16 21 C 0.05 0.39 11.49 -17.22 -0.20 0.19 16 22 N -0.38 -3.54 4.01 -68.16 -0.27 -3.81 16 23 C 0.10 0.51 11.47 59.85 0.69 1.19 16 24 N -0.29 -3.59 12.58 33.67 0.42 -3.17 16 25 H 0.05 0.93 6.47 -51.93 -0.34 0.59 16 26 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 27 H 0.01 0.17 8.14 -51.92 -0.42 -0.25 16 28 H 0.03 0.64 6.99 -51.93 -0.36 0.28 16 29 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.07 1.10 7.93 -51.93 -0.41 0.68 16 32 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.37 4.66 9.05 45.56 0.41 5.07 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.35 4.51 8.28 -39.29 -0.33 4.19 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -35.07 354.37 -7.56 -42.63 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.31 Total: 4.48 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.52 Total: -5.50 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.95 Total: -55.09 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.45 Total: -8.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.07 -7.56 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579702349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.157 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds