Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.39876 * 126.03615 * 269.69533 * 19 18 17 21 21 N 1.30833 * 108.19867 * 179.81658 * 20 19 18 22 22 N 1.40088 * 108.20625 * 0.43511 * 21 20 19 23 23 C 1.46500 * 126.03738 * 179.69691 * 22 21 20 24 24 C 1.34949 * 107.92617 * 359.72163 * 22 21 20 25 25 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 26 26 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 27 27 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 28 28 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 29 29 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 30 30 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 32 32 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 33 33 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 34 34 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 35 35 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 36 36 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 37 37 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 38 38 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 39 39 H 1.08001 * 125.89972 * 359.97438 * 20 19 18 40 40 H 1.09000 * 109.47491 * 270.02602 * 23 22 21 41 41 H 1.09007 * 109.46981 * 30.02635 * 23 22 21 42 42 H 1.08997 * 109.46935 * 150.02231 * 23 22 21 43 43 H 1.07998 * 126.12380 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 8.5398 -2.6277 -2.8980 21 7 9.5917 -3.2821 -2.4772 22 7 9.1607 -4.4965 -1.9276 23 6 10.0185 -5.5324 -1.3469 24 6 7.8157 -4.5437 -2.0281 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3633 -1.0237 -0.0902 27 1 -0.3633 0.4337 0.9316 28 1 3.0797 1.3443 -0.1083 29 1 1.5612 1.9273 -0.8310 30 1 2.9876 4.9176 0.7775 31 1 1.3932 -1.6630 -1.2815 32 1 1.9552 -0.1531 -2.0382 33 1 2.9842 -2.8273 0.2040 34 1 3.4165 -2.8115 -2.2453 35 1 3.9750 -1.2717 -2.9420 36 1 5.4714 -2.8432 -0.9473 37 1 5.4001 -3.9264 -3.1222 38 1 5.9579 -2.3862 -3.8184 39 1 8.5457 -1.6583 -3.3743 40 1 10.3158 -6.2360 -2.1244 41 1 10.9068 -5.0695 -0.9168 42 1 9.4713 -6.0622 -0.5673 43 1 7.1804 -5.3511 -1.6951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584226817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = 37.414472 kcal Electronic energy + Delta-G solvation = -21689.200397 eV Core-core repulsion = 18385.448352 eV Total energy + Delta-G solvation = -3303.752045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31118 -38.18209 -36.05619 -34.98546 -33.30708 -32.42775 -31.06917 -29.39776 -27.61458 -27.18840 -25.67453 -24.04361 -22.94904 -21.43056 -21.22602 -20.35625 -19.96647 -17.21520 -16.49175 -16.01998 -15.84057 -15.65116 -14.90184 -14.70948 -14.57509 -14.42855 -14.17102 -13.87109 -13.45030 -13.22343 -12.96619 -12.85237 -12.80079 -12.31256 -11.92897 -11.80038 -11.72351 -11.33612 -11.08802 -10.90220 -10.74057 -10.64145 -10.55677 -10.32014 -9.70364 -9.58007 -9.56556 -9.08476 -8.65378 -8.35709 -8.24666 -7.14828 -5.95524 -3.95865 1.71634 2.34972 2.65392 3.37886 3.43363 3.46782 4.22362 4.35644 4.50243 4.60966 4.82414 4.84731 4.94447 4.98939 5.08028 5.09408 5.26253 5.37756 5.39877 5.47989 5.61905 5.66640 5.68775 5.78143 5.87746 6.00224 6.09101 6.12403 6.39046 6.50661 6.61757 6.74972 6.80934 7.07854 7.35068 7.37606 7.49650 7.55718 7.86570 8.11856 8.17773 8.27416 8.62271 9.11231 9.67689 11.15631 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.002920 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.184903 B = 9587.814142 C =10252.078635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.111 0.889 15 O -0.541 6.541 16 C 0.030 3.970 17 N -0.679 5.679 18 C 0.138 3.862 19 C -0.230 4.230 20 C 0.069 3.931 21 N -0.302 5.302 22 N -0.380 5.380 23 C 0.103 3.897 24 C 0.058 3.942 25 H 0.011 0.989 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.032 0.968 29 H -0.011 1.011 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.357 0.643 34 H 0.026 0.974 35 H 0.078 0.922 36 H 0.347 0.653 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.184 0.816 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -20.509 -8.255 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.129 0.871 15 O -0.344 6.344 16 C -0.100 4.100 17 N -0.311 5.311 18 C 0.008 3.992 19 C -0.242 4.242 20 C -0.117 4.117 21 N -0.123 5.123 22 N -0.162 5.162 23 C -0.039 4.039 24 C -0.089 4.089 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.006 0.994 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.202 0.798 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.166 0.834 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.201 0.799 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.219 -19.573 -7.637 23.364 hybrid contribution -2.148 -0.334 -0.195 2.182 sum 8.072 -19.908 -7.832 22.865 Atomic orbital electron populations 1.22189 0.88944 0.98479 1.01127 1.62040 1.06432 1.17910 1.39219 1.19790 0.95595 0.81388 0.96505 1.21149 1.34601 0.96792 1.01679 0.91954 1.24989 0.95389 0.97397 0.96934 1.69958 1.38518 1.11440 1.34009 0.86503 0.78818 0.78328 0.83779 1.20611 1.21400 1.19946 1.22680 0.95983 0.97989 0.93711 1.21992 0.95074 0.93609 0.83711 0.87107 1.86711 1.73800 1.34299 1.39553 1.22677 0.88514 0.98866 0.99979 1.60359 1.17678 1.47813 1.05290 1.20124 0.88940 0.95852 0.94269 1.19992 0.96421 0.96068 1.11715 1.23820 0.89464 0.99736 0.98709 1.77375 1.23592 0.93680 1.17670 1.48440 1.05045 1.15398 1.47301 1.21827 0.95252 0.88404 0.98392 1.22312 0.85153 1.00195 1.01283 0.97058 0.94027 0.90979 0.94961 0.99364 0.92992 0.92397 0.94920 0.79810 0.95565 0.90310 0.83406 0.95228 0.90371 0.79901 0.90948 0.89313 0.89548 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.31 60.07 0.56 1.37 16 2 N -0.53 -11.65 4.59 -244.37 -1.12 -12.77 16 3 C 0.19 5.13 4.55 -4.98 -0.02 5.10 16 4 C -0.50 -14.58 8.58 -34.44 -0.30 -14.87 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.03 0.45 4.65 -3.82 -0.02 0.44 16 13 C 0.12 1.90 3.31 -26.73 -0.09 1.81 16 14 H 0.11 2.26 6.73 -51.93 -0.35 1.91 16 15 O -0.54 -8.94 12.58 -35.23 -0.44 -9.38 16 16 C 0.03 0.37 5.39 -3.82 -0.02 0.35 16 17 N -0.68 -8.51 6.49 -115.06 -0.75 -9.26 16 18 C 0.14 1.42 6.17 -4.98 -0.03 1.39 16 19 C -0.23 -2.51 5.61 -105.05 -0.59 -3.10 16 20 C 0.07 0.83 11.96 -17.36 -0.21 0.62 16 21 N -0.30 -3.89 12.58 30.63 0.39 -3.50 16 22 N -0.38 -3.87 4.01 -68.16 -0.27 -4.15 16 23 C 0.10 0.59 11.47 59.85 0.69 1.28 16 24 C 0.06 0.54 11.40 -17.22 -0.20 0.35 16 25 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 26 H 0.04 0.68 7.85 -51.93 -0.41 0.27 16 27 H 0.07 1.51 7.01 -51.93 -0.36 1.15 16 28 H 0.03 0.92 6.60 -51.93 -0.34 0.58 16 29 H -0.01 -0.32 8.07 -51.92 -0.42 -0.74 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 32 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 33 H 0.36 4.36 9.05 45.56 0.41 4.77 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.35 4.39 8.11 -39.29 -0.32 4.07 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -34.94 358.03 -7.75 -42.69 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.34 Total: 4.14 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.32 Total: -3.78 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -1.02 Total: -56.30 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.44 Total: -9.38 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.94 -7.75 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584226817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.104 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds