Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.39876 * 126.03615 * 269.69533 * 19 18 17 21 21 N 1.30833 * 108.19867 * 179.81658 * 20 19 18 22 22 N 1.40088 * 108.20625 * 0.43511 * 21 20 19 23 23 C 1.46500 * 126.03738 * 179.69691 * 22 21 20 24 24 C 1.34949 * 107.92617 * 359.72163 * 22 21 20 25 25 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 26 26 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 27 27 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 28 28 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 29 29 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 30 30 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 32 32 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 33 33 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 34 34 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 35 35 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 36 36 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 37 37 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 38 38 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 39 39 H 1.08001 * 125.89972 * 359.97438 * 20 19 18 40 40 H 1.09000 * 109.47491 * 270.02602 * 23 22 21 41 41 H 1.09007 * 109.46981 * 30.02635 * 23 22 21 42 42 H 1.08997 * 109.46935 * 150.02231 * 23 22 21 43 43 H 1.07998 * 126.12380 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 8.5398 -2.6277 -2.8980 21 7 9.5917 -3.2821 -2.4772 22 7 9.1607 -4.4965 -1.9276 23 6 10.0185 -5.5324 -1.3469 24 6 7.8157 -4.5437 -2.0281 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3633 -1.0237 -0.0902 27 1 -0.3633 0.4337 0.9316 28 1 3.0797 1.3443 -0.1083 29 1 1.5612 1.9273 -0.8310 30 1 2.9876 4.9176 0.7775 31 1 1.3932 -1.6630 -1.2815 32 1 1.9552 -0.1531 -2.0382 33 1 2.9842 -2.8273 0.2040 34 1 3.4165 -2.8115 -2.2453 35 1 3.9750 -1.2717 -2.9420 36 1 5.4714 -2.8432 -0.9473 37 1 5.4001 -3.9264 -3.1222 38 1 5.9579 -2.3862 -3.8184 39 1 8.5457 -1.6583 -3.3743 40 1 10.3158 -6.2360 -2.1244 41 1 10.9068 -5.0695 -0.9168 42 1 9.4713 -6.0622 -0.5673 43 1 7.1804 -5.3511 -1.6951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584226817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = 8.002102 kcal Electronic energy + Delta-G solvation = -21690.475813 eV Core-core repulsion = 18385.448352 eV Total energy + Delta-G solvation = -3305.027461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07490 -39.52457 -37.48211 -36.15517 -34.59095 -34.02984 -32.05337 -30.57660 -29.30933 -28.30704 -26.85269 -25.52876 -24.30951 -22.70481 -21.99310 -21.72321 -21.06642 -18.60409 -17.99489 -17.30227 -17.04095 -16.56246 -16.39520 -16.14701 -15.74936 -15.53462 -15.28926 -14.99480 -14.86523 -14.60918 -13.97545 -13.80792 -13.75852 -13.47680 -13.33308 -13.11566 -12.93998 -12.74884 -12.54557 -12.52816 -12.45184 -12.30439 -12.10428 -11.57404 -11.46809 -11.31228 -10.73117 -10.59313 -10.34881 -9.45028 -9.11364 -8.92248 -8.18998 -6.28543 0.97361 1.40176 1.43001 1.53328 1.72674 1.81620 2.41307 3.10783 3.14889 3.59126 3.72855 3.76699 3.99972 4.09203 4.19350 4.33026 4.36507 4.41501 4.45197 4.45835 4.59761 4.63034 4.66992 4.70084 4.81159 4.86926 4.88059 4.93682 5.10066 5.15916 5.22825 5.30779 5.33656 5.66382 5.69577 6.08175 6.15589 6.22167 6.37388 6.57488 6.68454 6.75702 6.87678 7.11530 7.40765 8.92275 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.002920 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.184903 B = 9587.814142 C =10252.078635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.058 0.942 15 O -0.559 6.559 16 C 0.045 3.955 17 N -0.698 5.698 18 C 0.146 3.854 19 C -0.250 4.250 20 C 0.050 3.950 21 N -0.342 5.342 22 N -0.383 5.383 23 C 0.093 3.907 24 C 0.067 3.933 25 H 0.007 0.993 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.002 0.998 29 H -0.041 1.041 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.027 0.973 33 H 0.379 0.621 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.346 0.654 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.186 0.814 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -23.022 -7.678 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.187 1.187 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.076 0.924 15 O -0.365 6.365 16 C -0.085 4.085 17 N -0.331 5.331 18 C 0.016 3.984 19 C -0.262 4.262 20 C -0.135 4.135 21 N -0.164 5.164 22 N -0.165 5.165 23 C -0.047 4.047 24 C -0.081 4.081 25 H 0.025 0.975 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.020 0.980 29 H -0.023 1.023 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.046 0.954 33 H 0.227 0.773 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.165 0.835 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.203 0.797 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.124 -22.125 -7.071 24.955 hybrid contribution -1.773 0.337 -0.379 1.844 sum 7.351 -21.788 -7.449 24.171 Atomic orbital electron populations 1.22215 0.87440 1.00939 0.99966 1.61933 1.07900 1.15064 1.41843 1.19386 0.93670 0.83963 0.94678 1.21485 1.34675 0.97430 1.02462 0.92096 1.25945 0.95098 0.98156 1.00744 1.70091 1.39464 1.11878 1.36181 0.85385 0.78954 0.77294 0.79000 1.20085 1.20602 1.18668 1.22815 0.97070 0.98625 0.91761 1.21694 0.93852 0.92614 0.85331 0.92398 1.86656 1.74521 1.35452 1.39850 1.22444 0.89020 0.99497 0.97553 1.60306 1.17741 1.48878 1.06152 1.20077 0.88757 0.96400 0.93120 1.20154 0.96368 0.96750 1.12948 1.24050 0.90141 1.00255 0.99095 1.77293 1.24584 0.95371 1.19194 1.48820 1.05968 1.15135 1.46570 1.22177 0.95181 0.87760 0.99576 1.22872 0.85160 1.00413 0.99621 0.97457 0.89693 0.92880 0.97997 1.02334 0.92749 0.88257 0.95450 0.77337 0.92297 0.90539 0.83493 0.92977 0.90673 0.79712 0.89344 0.89660 0.86760 0.77663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.31 127.69 1.19 2.81 16 2 N -0.54 -23.74 4.59 -927.06 -4.25 -28.00 16 3 C 0.21 11.61 4.55 85.56 0.39 12.00 16 4 C -0.52 -30.90 8.58 25.60 0.22 -30.68 16 5 H 0.06 3.54 7.10 -2.91 -0.02 3.52 16 6 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 7 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 8 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.03 0.88 4.65 86.30 0.40 1.28 16 13 C 0.13 4.08 3.31 30.59 0.10 4.18 16 14 H 0.06 2.51 6.73 -2.39 -0.02 2.50 16 15 O -0.56 -17.77 12.58 -148.98 -1.87 -19.64 16 16 C 0.04 1.05 5.39 86.30 0.47 1.52 16 17 N -0.70 -16.72 6.49 -517.94 -3.36 -20.08 16 18 C 0.15 2.75 6.17 85.56 0.53 3.28 16 19 C -0.25 -5.21 5.61 -20.14 -0.11 -5.32 16 20 C 0.05 1.22 11.96 85.24 1.02 2.24 16 21 N -0.34 -8.89 12.58 -57.02 -0.72 -9.61 16 22 N -0.38 -7.31 4.01 -369.56 -1.48 -8.79 16 23 C 0.09 0.89 11.47 127.77 1.47 2.36 16 24 C 0.07 1.12 11.40 83.54 0.95 2.07 16 25 H 0.01 0.27 8.08 -2.39 -0.02 0.25 16 26 H 0.08 2.48 7.85 -2.39 -0.02 2.46 16 27 H 0.05 2.19 7.01 -2.39 -0.02 2.18 16 28 H 0.00 0.12 6.60 -2.39 -0.02 0.10 16 29 H -0.04 -2.45 8.07 -2.38 -0.02 -2.47 16 30 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.10 2.52 7.75 -2.39 -0.02 2.50 16 32 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 33 H 0.38 8.12 9.05 -74.06 -0.67 7.45 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.35 8.26 8.11 -89.69 -0.73 7.53 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -78.66 358.03 -2.69 -81.35 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.39 Total: 18.82 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 7.08 Total: -3.90 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -9.53 Total: -124.62 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.87 Total: -19.64 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -78.66 -2.69 -81.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584226817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.355 kcal (2) G-P(sol) polarization free energy of solvation -78.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds