Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46930 * 2 1 4 4 N 1.28599 * 124.61192 * 90.02605 * 3 2 1 5 5 C 1.31385 * 108.71598 * 179.97438 * 4 3 2 6 6 C 1.50693 * 127.05214 * 180.02562 * 5 4 3 7 7 C 1.39677 * 105.89712 * 0.02562 * 5 4 3 8 8 C 1.50700 * 127.04967 * 180.02562 * 7 5 4 9 9 N 1.46903 * 109.47315 * 89.99616 * 8 7 5 10 10 C 1.46903 * 110.99838 * 190.00204 * 9 8 7 11 11 C 1.50697 * 109.46692 * 175.74765 * 10 9 8 12 12 H 1.07999 * 120.00375 * 354.96142 * 11 10 9 13 13 C 1.37881 * 119.99825 * 174.96331 * 11 10 9 14 14 N 1.31516 * 120.00169 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00157 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47143 * 89.99584 * 15 13 11 17 17 H 1.48491 * 109.47360 * 210.00246 * 15 13 11 18 18 H 1.48506 * 109.47028 * 329.99997 * 15 13 11 19 19 C 1.46894 * 110.99979 * 66.04684 * 9 8 7 20 20 C 1.53008 * 109.46968 * 53.97022 * 19 9 8 21 21 O 1.42893 * 109.47062 * 67.06511 * 20 19 9 22 22 C 1.42897 * 113.99888 * 180.02562 * 21 20 19 23 23 N 1.28593 * 124.61824 * 269.98558 * 3 2 1 24 24 H 1.09002 * 109.47171 * 60.00154 * 1 2 3 25 25 H 1.09008 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47094 * 299.99694 * 1 2 3 27 27 H 1.09005 * 109.46872 * 240.00501 * 2 1 3 28 28 H 1.09000 * 109.47030 * 120.00610 * 2 1 3 29 29 H 1.08999 * 109.47383 * 89.97358 * 6 5 4 30 30 H 1.09003 * 109.47022 * 209.97857 * 6 5 4 31 31 H 1.09005 * 109.47313 * 329.97541 * 6 5 4 32 32 H 1.08999 * 109.47208 * 209.99688 * 8 7 5 33 33 H 1.09007 * 109.46827 * 329.99572 * 8 7 5 34 34 H 1.08994 * 109.46856 * 295.74610 * 10 9 8 35 35 H 1.09002 * 109.47083 * 55.74847 * 10 9 8 36 36 H 0.96996 * 120.00372 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47479 * 173.96810 * 19 9 8 38 38 H 1.08995 * 109.47331 * 293.97113 * 19 9 8 39 39 H 1.08999 * 109.46632 * 187.06383 * 20 19 9 40 40 H 1.09000 * 109.47201 * 307.05919 * 20 19 9 41 41 H 1.08997 * 109.47417 * 59.99845 * 22 21 20 42 42 H 1.09004 * 109.47262 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47145 * 299.99163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2623 2.0698 1.0584 5 6 2.6838 3.2610 0.6985 6 6 3.0857 4.3945 1.6065 7 6 2.6830 3.2613 -0.6982 8 6 3.0844 4.3951 -1.6062 9 7 4.5202 4.3008 -1.9020 10 6 4.9976 5.5107 -2.5849 11 6 6.4896 5.4228 -2.7780 12 1 7.0407 4.5947 -2.3574 13 6 7.1510 6.3997 -3.4916 14 7 8.4532 6.3233 -3.6598 15 14 6.1980 7.8324 -4.2185 16 1 6.1414 8.9408 -3.2318 17 1 6.8761 8.3026 -5.4530 18 1 4.8184 7.3926 -4.5485 19 6 4.8170 3.0985 -2.6922 20 6 3.9347 3.0791 -3.9421 21 8 4.3113 4.1517 -4.8077 22 6 3.5440 4.2243 -6.0110 23 7 2.2621 2.0699 -1.0583 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.1513 4.3246 1.8252 30 1 2.8772 5.3450 1.1153 31 1 2.5194 4.3339 2.5359 32 1 2.5173 4.3349 -2.5351 33 1 2.8764 5.3454 -1.1144 34 1 4.5100 5.5962 -3.5559 35 1 4.7604 6.3864 -1.9807 36 1 8.9185 7.0103 -4.1621 37 1 5.8660 3.1080 -2.9881 38 1 4.6167 2.2109 -2.0922 39 1 4.0630 2.1300 -4.4625 40 1 2.8906 3.1959 -3.6517 41 1 2.4920 4.3652 -5.7632 42 1 3.8908 5.0643 -6.6130 43 1 3.6638 3.2991 -6.5747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823437341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = 78.493648 kcal Electronic energy + Delta-G solvation = -23402.141692 eV Core-core repulsion = 20100.170973 eV Total energy + Delta-G solvation = -3301.970719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.32069 -38.27316 -36.07245 -34.92901 -32.69194 -32.33168 -31.39040 -29.22176 -28.33780 -27.47598 -26.04049 -24.90512 -23.27294 -22.31325 -20.97853 -20.68510 -19.30982 -17.16315 -16.74051 -16.40325 -16.00079 -15.81745 -14.86881 -14.54479 -14.36731 -14.09626 -13.81793 -13.60008 -13.38884 -13.21286 -12.82107 -12.47500 -12.31964 -12.24204 -12.08563 -11.70038 -11.66067 -11.48187 -11.20643 -11.03649 -10.77149 -10.59277 -10.53466 -10.34426 -10.13705 -9.86226 -9.67469 -9.09267 -9.01537 -8.70048 -8.36454 -7.17160 -5.87005 -3.80764 2.01452 2.41496 2.66052 3.41166 3.47937 3.53490 4.17373 4.37127 4.59967 4.62229 4.70292 4.87907 5.01647 5.05915 5.19465 5.39413 5.41238 5.48362 5.54969 5.56664 5.66166 5.71504 5.73975 5.84194 5.87347 5.94195 6.00499 6.04601 6.11228 6.21905 6.31384 6.44813 6.56920 6.81607 6.93815 7.08921 7.43007 7.72500 7.79129 8.02540 8.17200 8.59907 8.82829 9.19803 9.76604 11.26692 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.005053 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.607111 B = 5540.141333 C = 6246.276787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.165 5.165 4 N -0.300 5.300 5 C 0.018 3.982 6 C -0.060 4.060 7 C 0.028 3.972 8 C 0.131 3.869 9 N -0.515 5.515 10 C 0.150 3.850 11 C -0.490 4.490 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.909 5.909 15 Si 0.872 3.128 16 H -0.281 1.281 17 H -0.291 1.291 18 H -0.263 1.263 19 C 0.067 3.933 20 C 0.028 3.972 21 O -0.353 6.353 22 C 0.026 3.974 23 N -0.289 5.289 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.079 0.921 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 -9.949 4.799 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.021 3.979 3 N -0.065 5.065 4 N -0.142 5.142 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.001 3.999 9 N -0.239 5.239 10 C 0.024 3.976 11 C -0.528 4.528 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.549 5.549 15 Si 0.700 3.300 16 H -0.207 1.207 17 H -0.217 1.217 18 H -0.187 1.187 19 C -0.061 4.061 20 C -0.051 4.051 21 O -0.271 6.271 22 C -0.071 4.071 23 N -0.131 5.131 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.514 -11.097 5.216 20.568 hybrid contribution -0.788 1.337 -1.384 2.079 sum -17.302 -9.760 3.832 20.231 Atomic orbital electron populations 1.22170 0.93629 1.03435 1.03497 1.21821 0.95578 0.75132 1.05356 1.47824 1.46208 1.13007 0.99496 1.73911 1.19004 1.05351 1.15938 1.23016 1.03414 0.94090 0.93991 1.20026 1.02196 0.93014 0.96633 1.23057 1.02818 0.93883 0.93841 1.20369 0.91529 0.92637 0.95396 1.62149 1.10433 1.04665 1.46624 1.20500 0.97351 0.86434 0.93275 1.20911 0.89913 1.09680 1.32330 0.90631 1.24796 0.94568 0.97780 0.95888 1.69900 1.07624 1.35004 1.42368 0.86895 0.81105 0.83126 0.78842 1.20704 1.21734 1.18712 1.22152 1.01532 0.92953 0.89503 1.23306 0.99229 0.89610 0.92908 1.88367 1.58927 1.49811 1.30029 1.22687 0.95021 1.00925 0.88472 1.73962 1.18225 1.05267 1.15681 0.91568 0.89968 0.91595 0.87770 0.87815 0.89959 0.90234 0.91477 0.93576 0.89414 0.95024 0.96600 0.93044 0.88195 0.91625 0.94453 0.93535 0.95190 0.90247 0.94932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.24 37.16 0.38 -0.88 16 2 C 0.14 1.30 7.26 -4.04 -0.03 1.27 16 3 N -0.17 -2.36 3.95 -10.61 -0.04 -2.40 16 4 N -0.30 -4.66 12.05 33.71 0.41 -4.25 16 5 C 0.02 0.29 7.35 -82.25 -0.60 -0.32 16 6 C -0.06 -0.77 10.34 36.00 0.37 -0.40 16 7 C 0.03 0.46 5.96 -82.25 -0.49 -0.03 16 8 C 0.13 2.31 5.06 -4.97 -0.03 2.29 16 9 N -0.52 -10.84 4.74 -237.52 -1.13 -11.97 16 10 C 0.15 3.62 3.38 -4.98 -0.02 3.60 16 11 C -0.49 -13.96 8.77 -34.44 -0.30 -14.26 16 12 H 0.08 2.36 7.23 -52.49 -0.38 1.98 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.91 -28.36 13.96 55.43 0.77 -27.58 16 15 Si 0.87 21.98 27.57 -169.99 -4.69 17.30 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.26 -6.36 6.40 56.52 0.36 -6.00 16 19 C 0.07 1.36 5.45 -3.82 -0.02 1.34 16 20 C 0.03 0.51 5.69 37.16 0.21 0.72 16 21 O -0.35 -7.30 7.58 -35.23 -0.27 -7.57 16 22 C 0.03 0.42 11.01 101.05 1.11 1.53 16 23 N -0.29 -4.67 11.56 33.72 0.39 -4.28 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.95 7.50 -51.93 -0.39 0.56 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.82 5.71 -51.93 -0.30 0.52 16 33 H 0.09 1.43 7.37 -51.93 -0.38 1.05 16 34 H 0.03 0.80 3.99 -51.93 -0.21 0.59 16 35 H 0.02 0.39 7.73 -51.93 -0.40 -0.02 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.10 2.33 6.33 -51.93 -0.33 2.01 16 38 H 0.07 1.27 7.10 -51.93 -0.37 0.90 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.82 5.80 -51.93 -0.30 0.52 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -34.01 344.62 -5.75 -39.75 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.88 Total: -1.01 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.49 Total: -3.19 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.40 Total: -50.48 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.27 Total: -7.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.69 Total: 17.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.01 -5.75 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823437341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.248 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds