Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46930 * 2 1 4 4 N 1.28599 * 124.61192 * 90.02605 * 3 2 1 5 5 C 1.31385 * 108.71598 * 179.97438 * 4 3 2 6 6 C 1.50693 * 127.05214 * 180.02562 * 5 4 3 7 7 C 1.39677 * 105.89712 * 0.02562 * 5 4 3 8 8 C 1.50700 * 127.04967 * 180.02562 * 7 5 4 9 9 N 1.46903 * 109.47315 * 89.99616 * 8 7 5 10 10 C 1.46903 * 110.99838 * 190.00204 * 9 8 7 11 11 C 1.50697 * 109.46692 * 175.74765 * 10 9 8 12 12 H 1.07999 * 120.00375 * 354.96142 * 11 10 9 13 13 C 1.37881 * 119.99825 * 174.96331 * 11 10 9 14 14 N 1.31516 * 120.00169 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00157 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47143 * 89.99584 * 15 13 11 17 17 H 1.48491 * 109.47360 * 210.00246 * 15 13 11 18 18 H 1.48506 * 109.47028 * 329.99997 * 15 13 11 19 19 C 1.46894 * 110.99979 * 66.04684 * 9 8 7 20 20 C 1.53008 * 109.46968 * 53.97022 * 19 9 8 21 21 O 1.42893 * 109.47062 * 67.06511 * 20 19 9 22 22 C 1.42897 * 113.99888 * 180.02562 * 21 20 19 23 23 N 1.28593 * 124.61824 * 269.98558 * 3 2 1 24 24 H 1.09002 * 109.47171 * 60.00154 * 1 2 3 25 25 H 1.09008 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47094 * 299.99694 * 1 2 3 27 27 H 1.09005 * 109.46872 * 240.00501 * 2 1 3 28 28 H 1.09000 * 109.47030 * 120.00610 * 2 1 3 29 29 H 1.08999 * 109.47383 * 89.97358 * 6 5 4 30 30 H 1.09003 * 109.47022 * 209.97857 * 6 5 4 31 31 H 1.09005 * 109.47313 * 329.97541 * 6 5 4 32 32 H 1.08999 * 109.47208 * 209.99688 * 8 7 5 33 33 H 1.09007 * 109.46827 * 329.99572 * 8 7 5 34 34 H 1.08994 * 109.46856 * 295.74610 * 10 9 8 35 35 H 1.09002 * 109.47083 * 55.74847 * 10 9 8 36 36 H 0.96996 * 120.00372 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47479 * 173.96810 * 19 9 8 38 38 H 1.08995 * 109.47331 * 293.97113 * 19 9 8 39 39 H 1.08999 * 109.46632 * 187.06383 * 20 19 9 40 40 H 1.09000 * 109.47201 * 307.05919 * 20 19 9 41 41 H 1.08997 * 109.47417 * 59.99845 * 22 21 20 42 42 H 1.09004 * 109.47262 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47145 * 299.99163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2623 2.0698 1.0584 5 6 2.6838 3.2610 0.6985 6 6 3.0857 4.3945 1.6065 7 6 2.6830 3.2613 -0.6982 8 6 3.0844 4.3951 -1.6062 9 7 4.5202 4.3008 -1.9020 10 6 4.9976 5.5107 -2.5849 11 6 6.4896 5.4228 -2.7780 12 1 7.0407 4.5947 -2.3574 13 6 7.1510 6.3997 -3.4916 14 7 8.4532 6.3233 -3.6598 15 14 6.1980 7.8324 -4.2185 16 1 6.1414 8.9408 -3.2318 17 1 6.8761 8.3026 -5.4530 18 1 4.8184 7.3926 -4.5485 19 6 4.8170 3.0985 -2.6922 20 6 3.9347 3.0791 -3.9421 21 8 4.3113 4.1517 -4.8077 22 6 3.5440 4.2243 -6.0110 23 7 2.2621 2.0699 -1.0583 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.1513 4.3246 1.8252 30 1 2.8772 5.3450 1.1153 31 1 2.5194 4.3339 2.5359 32 1 2.5173 4.3349 -2.5351 33 1 2.8764 5.3454 -1.1144 34 1 4.5100 5.5962 -3.5559 35 1 4.7604 6.3864 -1.9807 36 1 8.9185 7.0103 -4.1621 37 1 5.8660 3.1080 -2.9881 38 1 4.6167 2.2109 -2.0922 39 1 4.0630 2.1300 -4.4625 40 1 2.8906 3.1959 -3.6517 41 1 2.4920 4.3652 -5.7632 42 1 3.8908 5.0643 -6.6130 43 1 3.6638 3.2991 -6.5747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823437341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = 52.989490 kcal Electronic energy + Delta-G solvation = -23403.247635 eV Core-core repulsion = 20100.170973 eV Total energy + Delta-G solvation = -3303.076662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.47615 -39.82303 -37.53562 -35.96714 -34.57573 -33.69691 -32.51776 -30.90967 -29.83337 -28.60901 -27.37381 -26.48003 -24.39650 -23.84065 -22.40100 -21.83784 -20.88737 -18.87917 -18.15893 -17.64291 -17.46004 -17.24573 -16.45791 -15.97053 -15.69619 -15.50426 -15.20651 -14.97093 -14.55885 -14.36578 -14.15661 -13.85430 -13.73295 -13.34372 -13.19940 -13.02492 -12.93513 -12.82677 -12.54182 -12.41618 -12.30598 -12.17599 -11.98491 -11.78386 -11.73022 -11.69428 -11.26934 -11.01568 -10.66877 -10.38835 -9.85570 -8.82672 -8.12767 -6.11169 0.85137 1.40462 1.42388 1.44996 1.49688 1.57115 2.48456 2.96898 3.10288 3.24234 3.48854 3.77918 3.96435 3.97923 4.14436 4.16967 4.24148 4.29974 4.38750 4.46419 4.52468 4.54782 4.61442 4.72553 4.73211 4.77335 4.82868 4.88848 4.91447 5.01030 5.09766 5.12383 5.26711 5.27836 5.45737 5.52731 5.70416 5.88817 6.08358 6.35643 6.43173 6.76963 6.91520 7.42101 7.50202 9.04499 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.005053 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.607111 B = 5540.141333 C = 6246.276787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 N -0.157 5.157 4 N -0.309 5.309 5 C 0.005 3.995 6 C -0.059 4.059 7 C 0.005 3.995 8 C 0.138 3.862 9 N -0.528 5.528 10 C 0.163 3.837 11 C -0.488 4.488 12 H 0.029 0.971 13 C 0.009 3.991 14 N -0.959 5.959 15 Si 0.942 3.058 16 H -0.269 1.269 17 H -0.291 1.291 18 H -0.243 1.243 19 C 0.075 3.925 20 C 0.037 3.963 21 O -0.393 6.393 22 C 0.021 3.979 23 N -0.296 5.296 24 H 0.053 0.947 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.035 0.965 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.455 -10.147 4.728 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 N -0.059 5.059 4 N -0.152 5.152 5 C -0.157 4.157 6 C -0.118 4.118 7 C -0.157 4.157 8 C 0.009 3.991 9 N -0.252 5.252 10 C 0.036 3.964 11 C -0.526 4.526 12 H 0.048 0.952 13 C -0.187 4.187 14 N -0.601 5.601 15 Si 0.766 3.234 16 H -0.194 1.194 17 H -0.218 1.218 18 H -0.167 1.167 19 C -0.053 4.053 20 C -0.041 4.041 21 O -0.312 6.312 22 C -0.076 4.076 23 N -0.139 5.139 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.404 -11.311 5.159 23.044 hybrid contribution 0.097 1.193 -1.310 1.775 sum -19.307 -10.118 3.848 22.135 Atomic orbital electron populations 1.22122 0.92084 1.05205 1.02346 1.22367 0.96852 0.73049 1.07016 1.48416 1.44742 1.14022 0.98764 1.73907 1.19360 1.05457 1.16450 1.23412 1.03363 0.94841 0.94060 1.20101 1.01906 0.92570 0.97184 1.22914 1.04425 0.94142 0.94192 1.20308 0.88982 0.93958 0.95898 1.62007 1.13190 1.03580 1.46378 1.20221 0.94288 0.88045 0.93816 1.21118 0.92243 1.07940 1.31303 0.95239 1.25691 0.95422 1.01029 0.96540 1.70069 1.09709 1.36443 1.43922 0.85791 0.80274 0.79352 0.77963 1.19436 1.21778 1.16677 1.21940 0.99528 0.93027 0.90850 1.23183 0.99034 0.89957 0.91877 1.88268 1.60520 1.50656 1.31804 1.22876 0.95604 1.02018 0.87077 1.73894 1.18231 1.05260 1.16525 0.92792 0.86733 0.92538 0.86338 0.86010 0.90723 0.89351 0.89608 0.93225 0.88049 0.94809 0.95967 0.93033 0.92380 0.90932 0.92889 0.92164 0.93197 0.90109 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.24 71.98 0.74 -1.24 16 2 C 0.12 2.00 7.26 86.38 0.63 2.63 16 3 N -0.16 -4.22 3.95 -187.49 -0.74 -4.96 16 4 N -0.31 -9.13 12.05 -47.25 -0.57 -9.70 16 5 C 0.01 0.16 7.35 42.97 0.32 0.48 16 6 C -0.06 -1.45 10.34 71.23 0.74 -0.71 16 7 C 0.01 0.18 5.96 42.97 0.26 0.43 16 8 C 0.14 4.68 5.06 85.56 0.43 5.11 16 9 N -0.53 -22.14 4.74 -905.36 -4.29 -26.43 16 10 C 0.16 7.80 3.38 85.56 0.29 8.09 16 11 C -0.49 -28.59 8.77 25.60 0.22 -28.37 16 12 H 0.03 1.95 7.23 -2.91 -0.02 1.93 16 13 C 0.01 0.52 5.47 84.66 0.46 0.98 16 14 N -0.96 -61.73 13.96 21.45 0.30 -61.43 16 15 Si 0.94 45.27 27.57 68.60 1.89 47.16 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 18 H -0.24 -10.85 6.40 99.48 0.64 -10.21 16 19 C 0.08 3.09 5.45 86.31 0.47 3.56 16 20 C 0.04 1.33 5.69 71.98 0.41 1.74 16 21 O -0.39 -15.78 7.58 -148.98 -1.13 -16.91 16 22 C 0.02 0.61 11.01 113.37 1.25 1.86 16 23 N -0.30 -9.08 11.56 -47.24 -0.55 -9.62 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.98 7.50 -2.39 -0.02 1.96 16 31 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.05 1.65 5.71 -2.39 -0.01 1.64 16 33 H 0.10 3.11 7.37 -2.38 -0.02 3.09 16 34 H 0.03 1.65 3.99 -2.39 -0.01 1.64 16 35 H 0.02 1.04 7.73 -2.39 -0.02 1.02 16 36 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.06 2.85 6.33 -2.39 -0.02 2.84 16 38 H 0.07 2.83 7.10 -2.39 -0.02 2.81 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.98 5.80 -2.39 -0.01 1.97 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -75.06 344.62 2.05 -73.01 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.92 Total: 14.32 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 6.21 Total: -5.45 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -5.85 Total: -112.13 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.13 Total: -16.91 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.89 Total: 47.16 kcal Total: -75.06 2.05 -73.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823437341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.004 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds