Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 N 1.46899 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.46847 * 110.99299 * 45.79217 * 4 3 2 6 6 C 1.53041 * 109.51486 * 185.84807 * 5 4 3 7 7 C 1.53120 * 109.27703 * 300.81824 * 6 5 4 8 8 C 1.53119 * 109.16202 * 57.65829 * 7 6 5 9 9 H 1.08996 * 109.50916 * 62.28058 * 8 7 6 10 10 C 1.50700 * 109.50504 * 182.40665 * 8 7 6 11 11 O 1.21279 * 120.00481 * 119.79937 * 10 8 7 12 12 N 1.34781 * 119.99615 * 299.79474 * 10 8 7 13 13 C 1.46497 * 120.00124 * 180.02562 * 12 10 8 14 14 H 1.09006 * 109.46643 * 35.00344 * 13 12 10 15 15 C 1.50690 * 109.47289 * 155.00187 * 13 12 10 16 16 H 1.08002 * 119.99959 * 0.02562 * 15 13 12 17 17 C 1.37879 * 120.00320 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99845 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00202 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47016 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46781 * 120.00200 * 19 17 15 22 22 H 1.48498 * 109.47088 * 240.00046 * 19 17 15 23 23 C 1.52993 * 109.47243 * 275.00599 * 13 12 10 24 24 C 1.53003 * 109.47792 * 64.99706 * 23 13 12 25 25 C 1.46847 * 110.99862 * 170.00059 * 4 3 2 26 26 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47300 * 300.00397 * 1 2 3 28 28 H 1.08997 * 109.47114 * 60.00499 * 1 2 3 29 29 H 1.08999 * 109.47300 * 239.99603 * 2 1 3 30 30 H 1.09007 * 109.47157 * 119.99556 * 2 1 3 31 31 H 1.09002 * 109.46622 * 59.99826 * 3 2 1 32 32 H 1.08997 * 109.46688 * 299.99762 * 3 2 1 33 33 H 1.09005 * 109.46836 * 65.83946 * 5 4 3 34 34 H 1.08995 * 109.45748 * 305.85482 * 5 4 3 35 35 H 1.08996 * 109.50341 * 180.87808 * 6 5 4 36 36 H 1.08996 * 109.50165 * 60.75338 * 6 5 4 37 37 H 1.08993 * 109.52850 * 297.74913 * 7 6 5 38 38 H 1.09003 * 109.57279 * 177.58700 * 7 6 5 39 39 H 0.96996 * 119.99920 * 0.02562 * 12 10 8 40 40 H 0.96993 * 120.00060 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.47717 * 184.99814 * 23 13 12 42 42 H 1.09007 * 109.47159 * 304.99808 * 23 13 12 43 43 H 1.08998 * 109.46846 * 59.99940 * 24 23 13 44 44 H 1.08991 * 109.47432 * 180.02562 * 24 23 13 45 45 H 1.09003 * 109.46578 * 300.00805 * 24 23 13 46 46 H 1.09002 * 109.46448 * 54.14158 * 25 4 3 47 47 H 1.08994 * 109.45958 * 294.16523 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0355 0.4864 -0.9818 6 6 5.5583 0.4067 -0.8523 7 6 6.1592 1.7947 -1.0903 8 6 5.5582 2.7816 -0.0857 9 1 5.8208 2.4755 0.9269 10 6 6.1001 4.1626 -0.3511 11 8 5.3432 5.0670 -0.6339 12 7 7.4259 4.3925 -0.2742 13 6 7.9527 5.7350 -0.5317 14 1 7.2459 6.4792 -0.1646 15 6 9.2715 5.9017 0.1780 16 1 9.6770 5.0888 0.7621 17 6 9.9606 7.0921 0.0817 18 7 9.4666 8.0822 -0.6292 19 14 11.5951 7.2990 0.9621 20 1 11.9279 6.0474 1.6888 21 1 12.6590 7.5917 -0.0318 22 1 11.4981 8.4223 1.9285 23 6 8.1559 5.9232 -2.0363 24 6 6.8000 5.8779 -2.7438 25 6 4.0354 2.7926 -0.2374 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7733 0.8168 -1.9869 34 1 3.6034 -0.4974 -0.7986 35 1 5.9504 -0.2913 -1.5919 36 1 5.8209 0.0632 0.1483 37 1 5.9298 2.1221 -2.1043 38 1 7.2403 1.7524 -0.9570 39 1 8.0312 3.6690 -0.0483 40 1 9.9512 8.9197 -0.6966 41 1 8.6301 6.8871 -2.2213 42 1 8.7924 5.1256 -2.4196 43 1 6.1634 6.6754 -2.3606 44 1 6.9448 6.0115 -3.8157 45 1 6.3258 4.9140 -2.5588 46 1 3.6032 3.4837 0.4862 47 1 3.7731 3.1119 -1.2460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887268531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -60.004065 kcal Electronic energy + Delta-G solvation = -23327.094958 eV Core-core repulsion = 20122.658871 eV Total energy + Delta-G solvation = -3204.436087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87764 -38.26570 -35.24249 -34.80650 -32.48445 -31.88715 -31.21821 -30.37655 -27.03107 -26.30811 -24.37177 -23.15072 -22.67471 -21.43444 -20.12073 -19.59603 -19.13948 -17.19437 -16.09523 -15.76842 -15.54295 -15.13169 -14.74799 -14.59027 -14.23535 -14.03284 -13.85052 -13.56360 -13.00444 -12.84287 -12.66517 -12.53455 -12.13849 -11.94904 -11.73258 -11.51071 -11.41820 -11.25072 -11.17436 -11.02574 -10.94883 -10.82819 -10.65023 -10.43117 -10.31900 -10.28201 -10.13364 -9.60800 -9.01715 -8.82972 -8.48068 -8.31843 -7.76747 -6.10999 -4.20087 3.24175 3.32161 3.34781 3.46779 3.71399 4.25148 4.44659 4.67767 4.78961 4.79657 4.94673 5.00593 5.11675 5.20255 5.23923 5.35406 5.42176 5.47493 5.53378 5.61885 5.64068 5.74164 5.79249 5.83612 5.92489 5.97349 6.00384 6.04199 6.07560 6.27025 6.37506 6.40384 6.47652 6.67913 7.05333 7.06314 7.08057 7.21988 7.39528 7.50751 7.64469 7.76329 7.93059 8.20429 8.72593 8.80830 9.20039 9.47788 10.94393 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032188 B = 0.003458 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.668138 B = 8094.826725 C = 8281.309006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.055 3.945 4 N -0.541 5.541 5 C 0.047 3.953 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.105 4.105 9 H 0.098 0.902 10 C 0.506 3.494 11 O -0.552 6.552 12 N -0.707 5.707 13 C 0.270 3.730 14 H 0.048 0.952 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.126 4.126 24 C -0.136 4.136 25 C 0.080 3.920 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.387 0.613 40 H 0.263 0.737 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.049 0.951 44 H 0.021 0.979 45 H 0.038 0.962 46 H 0.080 0.920 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.088 -16.398 -0.506 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.127 4.127 9 H 0.116 0.884 10 C 0.291 3.709 11 O -0.431 6.431 12 N -0.354 5.354 13 C 0.168 3.832 14 H 0.066 0.934 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.165 4.165 24 C -0.194 4.194 25 C -0.048 4.048 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.220 0.780 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.099 0.901 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.410 -15.666 -0.304 19.383 hybrid contribution 0.969 0.161 -0.274 1.020 sum -10.441 -15.505 -0.578 18.702 Atomic orbital electron populations 1.21740 0.95646 1.01622 1.01914 1.21698 0.95634 0.96651 1.02553 1.22142 0.87187 0.96887 1.01012 1.61988 1.07051 1.07636 1.49840 1.22236 0.95609 0.96805 0.93400 1.21586 0.94414 0.96798 1.02429 1.21554 1.00301 0.94236 0.98854 1.21324 0.95824 0.93958 1.01608 0.88393 1.20255 0.83414 0.89447 0.77808 1.90657 1.57707 1.45840 1.48917 1.46477 1.06036 1.14338 1.68577 1.18761 0.93923 0.78364 0.92155 0.93408 1.21281 1.04859 0.99780 1.31144 0.92079 1.24893 0.98039 0.95602 0.95206 1.69907 1.38591 1.04090 1.39429 0.86415 0.83234 0.78188 0.79391 1.19739 1.20916 1.20907 1.21922 0.94747 1.03044 0.96819 1.21832 0.99190 1.00975 0.97359 1.21772 0.93422 0.88703 1.00898 0.92654 0.92562 0.92848 0.91748 0.91110 0.90636 0.94905 0.95109 0.90272 0.91435 0.90940 0.91830 0.91029 0.78038 0.92663 0.88388 0.95124 0.93210 0.95994 0.94307 0.90128 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.07 5.18 -26.73 -0.14 -1.20 16 3 C 0.06 0.58 5.27 -3.82 -0.02 0.56 16 4 N -0.54 -6.50 4.81 -234.66 -1.13 -7.63 16 5 C 0.05 0.50 4.85 -3.83 -0.02 0.48 16 6 C -0.11 -1.18 6.09 -26.65 -0.16 -1.34 16 7 C -0.11 -1.41 5.16 -26.61 -0.14 -1.55 16 8 C -0.11 -1.56 2.69 -91.69 -0.25 -1.81 16 9 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 10 C 0.51 9.90 5.72 -10.98 -0.06 9.84 16 11 O -0.55 -12.76 13.12 5.56 0.07 -12.69 16 12 N -0.71 -14.53 4.93 -54.94 -0.27 -14.80 16 13 C 0.27 6.78 2.24 -69.09 -0.15 6.62 16 14 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.53 -14.04 8.73 -34.44 -0.30 -14.35 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 18 N -0.88 -24.81 11.30 55.43 0.63 -24.18 16 19 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 24 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 25 C 0.08 1.16 4.00 -3.83 -0.02 1.15 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.52 6.21 -51.93 -0.32 0.20 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.71 5.81 -51.93 -0.30 0.41 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.86 7.65 -51.93 -0.40 0.47 16 39 H 0.39 7.00 8.02 -40.82 -0.33 6.67 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.10 2.65 5.96 -51.93 -0.31 2.34 16 42 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 46 H 0.08 1.26 8.10 -51.93 -0.42 0.83 16 47 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -29.24 356.84 -9.78 -39.02 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.63 Total: 5.90 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.81 Total: -6.63 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.77 Total: -46.61 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.24 -9.78 -39.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887268531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.984 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds