Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 120.00155 * 2 1 4 4 H 1.48501 * 109.47217 * 270.00080 * 3 2 1 5 5 H 1.48500 * 109.47037 * 29.99379 * 3 2 1 6 6 H 1.48498 * 109.47434 * 149.99875 * 3 2 1 7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.50701 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.38233 * 119.99171 * 269.72424 * 13 12 10 15 15 C 1.38221 * 120.01137 * 179.76441 * 14 13 12 16 16 C 1.38327 * 119.98849 * 0.51394 * 15 14 13 17 17 Br 1.89094 * 120.01053 * 179.71876 * 16 15 14 18 18 C 1.38323 * 119.97745 * 359.74139 * 16 15 14 19 19 C 1.38212 * 119.99322 * 0.02562 * 18 16 15 20 20 H 0.96996 * 119.99832 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 23 23 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 24 24 H 1.08004 * 119.99601 * 0.02709 * 14 13 12 25 25 H 1.07999 * 120.00655 * 180.23086 * 15 14 13 26 26 H 1.08001 * 120.00599 * 179.97438 * 18 16 15 27 27 H 1.07999 * 120.00030 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 6 2.2231 -6.0084 0.0007 14 6 2.6687 -6.5373 -1.1962 15 6 3.5707 -7.5847 -1.1960 16 6 4.0193 -8.1106 0.0022 17 35 5.2471 -9.5486 0.0032 18 6 3.5691 -7.5844 1.1996 19 6 2.6709 -6.5339 1.1985 20 1 -0.4850 0.8400 -0.0004 21 1 0.3534 -2.3906 -0.0002 22 1 0.6175 -4.9205 -0.8903 23 1 0.6168 -4.9208 0.8897 24 1 2.3153 -6.1293 -2.1317 25 1 3.9216 -7.9954 -2.1311 26 1 3.9187 -7.9949 2.1354 27 1 2.3190 -6.1233 2.1333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005768478.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -20.547179 kcal Electronic energy + Delta-G solvation = -13859.750793 eV Core-core repulsion = 11242.256124 eV Total energy + Delta-G solvation = -2617.494669 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.41225 -37.86040 -34.07632 -32.96401 -31.29801 -30.90208 -30.31147 -27.00547 -24.54503 -22.67238 -21.34546 -19.24109 -17.93928 -16.39580 -15.93776 -15.43847 -15.00043 -14.54421 -13.93627 -13.72170 -13.32166 -13.12024 -12.86414 -12.35316 -11.65572 -11.60867 -11.12353 -11.00669 -10.91319 -10.65740 -10.41921 -10.26301 -10.24886 -9.55609 -8.84751 -8.62988 -8.25126 -8.01732 -6.45839 -3.86905 1.26673 1.49312 1.68771 3.15159 3.24379 3.30305 3.76401 3.84938 4.16580 4.88792 4.92599 5.02208 5.17234 5.20510 5.48305 5.51954 5.76697 5.83647 5.98776 6.13816 6.24623 6.32413 6.43486 6.78178 6.98951 7.51551 8.00867 8.55516 9.13144 9.48883 9.99942 10.71600 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.053700 B = 0.003365 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.294146 B = 8319.515221 C = 8536.146093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.588 6.588 12 C -0.103 4.103 13 C -0.023 4.023 14 C -0.102 4.102 15 C -0.091 4.091 16 C -0.099 4.099 17 Br -0.068 7.068 18 C -0.091 4.091 19 C -0.102 4.102 20 H 0.272 0.728 21 H 0.393 0.607 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -17.707 0.011 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.228 3.772 11 O -0.473 6.473 12 C -0.143 4.143 13 C -0.024 4.024 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.178 4.178 17 Br 0.017 6.983 18 C -0.111 4.111 19 C -0.121 4.121 20 H 0.082 0.918 21 H 0.227 0.773 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.579 -18.069 0.019 18.640 hybrid contribution -0.463 1.265 -0.013 1.347 sum 4.116 -16.804 0.006 17.301 Atomic orbital electron populations 1.69607 1.05933 1.28245 1.50352 1.25275 0.95649 0.99764 0.97205 0.85856 0.79258 0.80749 0.78436 1.20365 1.20869 1.19398 1.19714 0.93393 0.82221 1.47720 0.87912 1.41885 1.09246 1.04569 1.63991 1.19686 0.88239 0.84489 0.84818 1.90555 1.13778 1.87186 1.55769 1.20670 0.97215 0.92305 1.04133 1.19585 0.95749 0.93936 0.93097 1.21013 0.97237 0.95704 0.98187 1.20991 0.97031 0.96541 0.96478 1.21627 1.01288 0.98372 0.96509 1.96632 1.58772 1.43533 1.99345 1.20988 0.97065 0.96509 0.96489 1.21013 0.97259 0.95664 0.98185 0.91806 0.77338 0.89102 0.89107 0.85308 0.85389 0.85390 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.14 13.05 55.50 0.72 -23.42 15 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 15 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 15 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 15 9 N -0.56 -13.93 5.29 -10.97 -0.06 -13.99 15 10 C 0.44 10.16 7.78 -10.98 -0.09 10.07 15 11 O -0.59 -15.80 15.61 5.55 0.09 -15.71 15 12 C -0.10 -1.72 5.83 -29.03 -0.17 -1.89 15 13 C -0.02 -0.37 4.37 -104.62 -0.46 -0.83 15 14 C -0.10 -1.55 9.70 -39.59 -0.38 -1.93 15 15 C -0.09 -1.26 9.79 -39.55 -0.39 -1.65 15 16 C -0.10 -1.38 6.22 -39.52 -0.25 -1.62 15 17 Br -0.07 -0.81 33.70 -68.01 -2.29 -3.10 15 18 C -0.09 -1.26 9.79 -39.56 -0.39 -1.65 15 19 C -0.10 -1.55 9.70 -39.59 -0.38 -1.93 15 20 H 0.27 6.90 8.31 -40.82 -0.34 6.57 15 21 H 0.39 9.25 7.90 -40.82 -0.32 8.93 15 22 H 0.09 1.31 8.08 -51.93 -0.42 0.89 15 23 H 0.09 1.31 8.08 -51.93 -0.42 0.89 15 24 H 0.13 1.76 8.06 -52.48 -0.42 1.33 15 25 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 26 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 27 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 LS Contribution 268.65 15.07 4.05 4.05 Total: -1.00 -30.56 268.65 -7.62 -38.18 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.36 Total: 7.51 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.74 Total: -9.36 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.67 Total: -37.40 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -2.29 Total: -3.10 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.56 -7.62 -38.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005768478.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.628 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds