Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00267 * 2 1 4 4 H 1.48493 * 109.47294 * 239.99944 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47132 * 119.99948 * 3 2 1 7 7 C 1.37878 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00010 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99748 * 179.97438 * 10 9 7 12 12 O 1.21558 * 120.00487 * 0.02562 * 11 10 9 13 13 C 1.47804 * 119.99850 * 179.97438 * 11 10 9 14 14 C 1.39607 * 120.13442 * 0.31906 * 13 11 10 15 15 C 1.37904 * 119.86225 * 180.25469 * 14 13 11 16 16 C 1.38487 * 120.13363 * 359.44841 * 15 14 13 17 17 Br 1.89097 * 119.86130 * 180.27846 * 16 15 14 18 18 C 1.38476 * 120.27188 * 0.25944 * 16 15 14 19 19 C 1.37906 * 120.13374 * 0.02562 * 18 16 15 20 20 H 0.97002 * 119.99705 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46834 * 59.99476 * 9 7 2 22 22 H 1.09007 * 109.46580 * 300.00062 * 9 7 2 23 23 H 0.96996 * 120.00029 * 359.97438 * 10 9 7 24 24 H 1.07998 * 120.06709 * 359.97438 * 14 13 11 25 25 H 1.08002 * 119.93538 * 179.73250 * 15 14 13 26 26 H 1.07992 * 119.92962 * 180.02562 * 18 16 15 27 27 H 1.08004 * 120.06628 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5585 -5.1055 0.0011 13 6 2.7140 -6.0068 0.0005 14 6 4.0872 -5.7550 0.0061 15 6 4.9783 -6.8074 0.0002 16 6 4.5135 -8.1120 0.0003 17 35 5.7423 -9.5492 0.0002 18 6 3.1527 -8.3682 0.0008 19 6 2.2517 -7.3242 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8904 23 1 3.1565 -3.4355 0.0002 24 1 4.4508 -4.7381 0.0105 25 1 6.0409 -6.6139 0.0002 26 1 2.7963 -9.3876 0.0013 27 1 1.1905 -7.5252 0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019911158.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -17.807372 kcal Electronic energy + Delta-G solvation = -13723.960021 eV Core-core repulsion = 11106.584159 eV Total energy + Delta-G solvation = -2617.375862 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87546 -37.99641 -34.37156 -32.76919 -32.22872 -31.15642 -29.64934 -27.21375 -23.78420 -22.92408 -22.02138 -19.90203 -18.17725 -16.36457 -15.84062 -15.50940 -14.90459 -14.65394 -14.54887 -14.09258 -13.73807 -13.25079 -12.91334 -12.03046 -11.92571 -11.83054 -11.39623 -11.04431 -10.99102 -10.87535 -10.51670 -10.36655 -9.47916 -9.31305 -9.21916 -8.87109 -8.78061 -7.98235 -6.21024 -4.28665 0.62720 1.15978 1.37551 3.02597 3.22768 3.27741 3.29027 3.89437 3.96540 4.31552 4.58994 4.70899 5.05646 5.15163 5.17334 5.31186 5.43961 5.77497 5.99317 6.03184 6.26917 6.57558 7.22393 7.29221 7.44110 7.58768 7.90550 8.49027 8.68892 8.94282 9.37708 10.89023 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.044743 B = 0.003319 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.641468 B = 8434.175778 C = 9044.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.702 5.702 11 C 0.536 3.464 12 O -0.548 6.548 13 C -0.103 4.103 14 C -0.084 4.084 15 C -0.098 4.098 16 C -0.078 4.078 17 Br -0.055 7.055 18 C -0.100 4.100 19 C -0.061 4.061 20 H 0.267 0.733 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.391 0.609 24 H 0.139 0.861 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.035 -18.386 0.005 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.350 5.350 11 C 0.321 3.679 12 O -0.428 6.428 13 C -0.107 4.107 14 C -0.103 4.103 15 C -0.118 4.118 16 C -0.158 4.158 17 Br 0.031 6.969 18 C -0.120 4.120 19 C -0.080 4.080 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.225 0.775 24 H 0.157 0.843 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.454 -18.892 0.006 22.627 hybrid contribution 0.658 1.348 -0.001 1.500 sum 13.111 -17.544 0.005 21.902 Atomic orbital electron populations 1.69961 1.06109 1.27521 1.48532 1.24951 0.94943 0.99486 0.94589 0.86452 0.79414 0.82209 0.78714 1.20032 1.21020 1.20034 1.21159 0.93227 0.90362 1.53709 0.91902 1.19190 0.88249 0.81713 0.98047 1.46454 1.11370 1.05954 1.71177 1.18197 0.87951 0.83301 0.78466 1.90746 1.16062 1.84841 1.51107 1.20504 0.93857 0.94879 1.01438 1.21439 0.92044 0.99636 0.97229 1.21042 1.00539 0.90448 0.99778 1.21964 0.93786 0.92796 1.07212 1.96709 1.58749 1.43834 1.97654 1.21081 0.90831 1.00125 0.99929 1.21336 1.00869 0.90628 0.95203 0.92309 0.95187 0.95175 0.77534 0.84334 0.84530 0.84547 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.93 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.55 -14.53 9.28 -34.44 -0.32 -14.85 15 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 15 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 15 10 N -0.70 -14.56 5.50 -62.44 -0.34 -14.90 15 11 C 0.54 10.76 7.77 -12.35 -0.10 10.66 15 12 O -0.55 -13.05 16.35 5.32 0.09 -12.96 15 13 C -0.10 -1.58 5.87 -104.96 -0.62 -2.20 15 14 C -0.08 -1.05 9.54 -39.19 -0.37 -1.42 15 15 C -0.10 -1.07 9.77 -39.61 -0.39 -1.46 15 16 C -0.08 -0.86 6.23 -39.40 -0.25 -1.11 15 17 Br -0.05 -0.53 33.69 -68.01 -2.29 -2.82 15 18 C -0.10 -1.13 9.77 -39.62 -0.39 -1.51 15 19 C -0.06 -0.82 9.59 -39.19 -0.38 -1.20 15 20 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.03 0.87 8.14 -51.92 -0.42 0.44 15 23 H 0.39 6.83 6.35 -40.82 -0.26 6.57 15 24 H 0.14 1.52 6.40 -52.49 -0.34 1.18 15 25 H 0.14 1.19 8.06 -52.49 -0.42 0.77 15 26 H 0.14 1.23 8.06 -52.49 -0.42 0.81 15 27 H 0.15 1.97 7.65 -52.48 -0.40 1.57 15 LS Contribution 267.10 15.07 4.03 4.03 Total: -1.00 -30.68 267.10 -7.96 -38.63 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -2.22 Total: 2.46 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.93 Total: -5.00 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.39 Total: -39.83 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.68 -7.96 -38.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019911158.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.823 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds