Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00267 * 2 1 4 4 H 1.48493 * 109.47294 * 239.99944 * 3 2 1 5 5 H 1.48503 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47132 * 119.99948 * 3 2 1 7 7 C 1.37878 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00010 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99748 * 179.97438 * 10 9 7 12 12 O 1.21558 * 120.00487 * 0.02562 * 11 10 9 13 13 C 1.47804 * 119.99850 * 179.97438 * 11 10 9 14 14 C 1.39607 * 120.13442 * 0.31906 * 13 11 10 15 15 C 1.37904 * 119.86225 * 180.25469 * 14 13 11 16 16 C 1.38487 * 120.13363 * 359.44841 * 15 14 13 17 17 Br 1.89097 * 119.86130 * 180.27846 * 16 15 14 18 18 C 1.38476 * 120.27188 * 0.25944 * 16 15 14 19 19 C 1.37906 * 120.13374 * 0.02562 * 18 16 15 20 20 H 0.97002 * 119.99705 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46834 * 59.99476 * 9 7 2 22 22 H 1.09007 * 109.46580 * 300.00062 * 9 7 2 23 23 H 0.96996 * 120.00029 * 359.97438 * 10 9 7 24 24 H 1.07998 * 120.06709 * 359.97438 * 14 13 11 25 25 H 1.08002 * 119.93538 * 179.73250 * 15 14 13 26 26 H 1.07992 * 119.92962 * 180.02562 * 18 16 15 27 27 H 1.08004 * 120.06628 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5585 -5.1055 0.0011 13 6 2.7140 -6.0068 0.0005 14 6 4.0872 -5.7550 0.0061 15 6 4.9783 -6.8074 0.0002 16 6 4.5135 -8.1120 0.0003 17 35 5.7423 -9.5492 0.0002 18 6 3.1527 -8.3682 0.0008 19 6 2.2517 -7.3242 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8904 23 1 3.1565 -3.4355 0.0002 24 1 4.4508 -4.7381 0.0105 25 1 6.0409 -6.6139 0.0002 26 1 2.7963 -9.3876 0.0013 27 1 1.1905 -7.5252 0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019911158.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -37.801915 kcal Electronic energy + Delta-G solvation = -13724.827050 eV Core-core repulsion = 11106.584159 eV Total energy + Delta-G solvation = -2618.242891 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.20415 -39.35687 -36.27173 -34.52143 -33.45410 -32.17194 -30.76521 -29.07815 -25.41516 -24.06486 -23.46207 -21.46466 -19.64507 -18.11047 -17.30999 -16.84570 -16.42523 -16.24693 -15.84932 -15.58410 -14.76583 -14.45446 -14.40702 -13.98893 -13.84357 -12.96271 -12.85049 -12.68628 -12.35519 -12.24149 -11.89543 -11.53097 -11.32391 -11.00642 -10.80928 -10.16098 -10.04306 -9.72336 -8.29641 -6.46690 -0.45495 0.21569 0.49589 1.44043 1.48026 1.56196 1.72861 2.26182 2.47869 2.69391 3.05450 3.65817 3.74321 3.83659 4.18203 4.25171 4.48918 4.86594 4.96578 5.04098 5.09239 5.20513 5.25914 5.40971 5.58058 5.65725 5.81569 6.61830 6.78272 7.19612 7.35078 8.82231 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.044743 B = 0.003319 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.641468 B = 8434.175778 C = 9044.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.535 3.465 12 O -0.596 6.596 13 C -0.128 4.128 14 C -0.077 4.077 15 C -0.091 4.091 16 C -0.075 4.075 17 Br -0.032 7.032 18 C -0.094 4.094 19 C -0.067 4.067 20 H 0.269 0.731 21 H -0.008 1.008 22 H -0.008 1.008 23 H 0.409 0.591 24 H 0.154 0.846 25 H 0.166 0.834 26 H 0.161 0.839 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.322 -18.942 0.006 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.346 5.346 11 C 0.323 3.677 12 O -0.479 6.479 13 C -0.131 4.131 14 C -0.097 4.097 15 C -0.111 4.111 16 C -0.155 4.155 17 Br 0.054 6.946 18 C -0.113 4.113 19 C -0.087 4.087 20 H 0.078 0.922 21 H 0.010 0.990 22 H 0.010 0.990 23 H 0.246 0.754 24 H 0.171 0.829 25 H 0.184 0.816 26 H 0.178 0.822 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.797 -19.482 0.007 25.082 hybrid contribution -0.320 1.342 -0.001 1.380 sum 15.476 -18.140 0.005 23.845 Atomic orbital electron populations 1.70130 1.08264 1.28685 1.49701 1.26075 0.95802 1.03932 0.93791 0.85191 0.77899 0.76505 0.79534 1.18599 1.21164 1.18607 1.21565 0.94370 0.90377 1.53255 0.89616 1.18637 0.88647 0.84018 0.94493 1.46139 1.11482 1.05274 1.71735 1.18940 0.88236 0.83969 0.76506 1.90708 1.18547 1.85561 1.53048 1.20112 0.94052 0.93419 1.05519 1.21570 0.90727 1.01088 0.96279 1.21340 1.01659 0.89758 0.98327 1.22233 0.94144 0.93749 1.05398 1.96755 1.57713 1.42709 1.97471 1.21265 0.90705 1.00482 0.98857 1.21345 1.01094 0.90666 0.95611 0.92209 0.99046 0.99033 0.75415 0.82859 0.81611 0.82171 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.32 15 2 C 0.00 0.21 5.46 84.66 0.46 0.67 15 3 Si 0.99 41.66 29.54 68.60 2.03 43.69 15 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 15 5 H -0.29 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 7 C -0.56 -29.93 9.28 25.60 0.24 -29.70 15 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 15 9 C 0.26 14.47 5.43 85.64 0.46 14.94 15 10 N -0.70 -29.69 5.50 -469.74 -2.58 -32.28 15 11 C 0.54 22.31 7.77 86.77 0.67 22.99 15 12 O -0.60 -30.17 16.35 -3.90 -0.06 -30.23 15 13 C -0.13 -3.88 5.87 -20.08 -0.12 -4.00 15 14 C -0.08 -1.77 9.54 22.52 0.21 -1.55 15 15 C -0.09 -1.69 9.77 22.25 0.22 -1.47 15 16 C -0.08 -1.43 6.23 22.39 0.14 -1.29 15 17 Br -0.03 -0.51 33.69 -20.37 -0.69 -1.19 15 18 C -0.09 -1.91 9.77 22.25 0.22 -1.69 15 19 C -0.07 -1.80 9.59 22.52 0.22 -1.59 15 20 H 0.27 15.07 8.31 -92.71 -0.77 14.29 15 21 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 22 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 15 23 H 0.41 14.10 6.35 -92.71 -0.59 13.51 15 24 H 0.15 2.97 6.40 -2.91 -0.02 2.95 15 25 H 0.17 2.12 8.06 -2.91 -0.02 2.10 15 26 H 0.16 2.45 8.06 -2.91 -0.02 2.43 15 27 H 0.14 3.82 7.65 -2.91 -0.02 3.80 15 Total: -1.00 -69.05 267.10 2.32 -66.74 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.61 Total: 11.28 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 2.73 Total: -2.69 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -2.30 Total: -87.60 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.06 Total: -30.23 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.19 kcal Total: -69.05 2.32 -66.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019911158.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.936 kcal (2) G-P(sol) polarization free energy of solvation -69.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds