Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99810 * 2 1 4 4 C 1.50701 * 109.47551 * 66.04355 * 3 2 1 5 5 H 1.08006 * 119.99811 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00243 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99905 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99971 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47106 * 60.00171 * 8 6 4 10 10 H 1.48496 * 109.46729 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.46996 * 300.00266 * 8 6 4 12 12 C 1.46893 * 111.00474 * 236.04128 * 2 1 3 13 13 C 1.53000 * 109.47542 * 200.34224 * 12 2 1 14 14 H 1.08999 * 109.46884 * 301.19337 * 13 12 2 15 15 O 1.42906 * 109.46606 * 61.19059 * 13 12 2 16 16 C 1.52995 * 109.47144 * 181.18726 * 13 12 2 17 17 N 1.46900 * 109.47044 * 179.97438 * 16 13 12 18 18 C 1.46904 * 110.99994 * 175.65522 * 17 16 13 19 19 C 1.53003 * 109.47020 * 156.87443 * 18 17 16 20 20 C 1.52999 * 117.50015 * 8.74498 * 19 18 17 21 21 C 1.52994 * 117.49690 * 300.08585 * 19 18 17 22 22 C 1.53002 * 109.47034 * 276.87256 * 18 17 16 23 23 C 1.53003 * 117.49996 * 250.09555 * 22 18 17 24 24 C 1.52995 * 117.49870 * 181.43494 * 22 18 17 25 25 H 1.08995 * 109.47073 * 54.91232 * 1 2 3 26 26 H 1.09001 * 109.47118 * 174.90720 * 1 2 3 27 27 H 1.09003 * 109.47334 * 294.90826 * 1 2 3 28 28 H 1.09001 * 109.46960 * 186.04709 * 3 2 1 29 29 H 1.08997 * 109.46804 * 306.04315 * 3 2 1 30 30 H 0.97002 * 119.99983 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46746 * 320.34880 * 12 2 1 32 32 H 1.09008 * 109.46806 * 80.34250 * 12 2 1 33 33 H 0.96698 * 113.99706 * 60.00358 * 15 13 12 34 34 H 1.09002 * 109.47454 * 300.00544 * 16 13 12 35 35 H 1.09007 * 109.47120 * 60.00343 * 16 13 12 36 36 H 1.00903 * 110.99706 * 51.70410 * 17 16 13 37 37 H 1.08998 * 109.47362 * 36.87247 * 18 17 16 38 38 H 1.09005 * 115.54598 * 154.41870 * 19 18 17 39 39 H 1.09003 * 117.49906 * 0.02562 * 20 19 18 40 40 H 1.09000 * 117.49642 * 145.01516 * 20 19 18 41 41 H 1.09001 * 117.50020 * 214.97904 * 21 19 18 42 42 H 1.08996 * 117.50317 * 359.97438 * 21 19 18 43 43 H 1.09001 * 115.54901 * 35.76929 * 22 18 17 44 44 H 1.08997 * 117.49599 * 359.97438 * 23 22 18 45 45 H 1.09003 * 117.49941 * 145.02174 * 23 22 18 46 46 H 1.09001 * 117.50152 * 214.98133 * 24 22 18 47 47 H 1.08999 * 117.49824 * 359.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 1.2984 5 1 1.0745 1.5114 2.0488 6 6 2.0276 3.3493 1.5288 7 7 2.7127 4.0016 0.6153 8 14 1.5825 4.1871 3.1380 9 1 2.1732 3.4296 4.2704 10 1 2.1147 5.5734 3.1379 11 1 0.1052 4.2245 3.2844 12 6 1.9955 -0.7660 -1.1374 13 6 3.4410 -1.1771 -0.8502 14 1 4.0450 -0.2860 -0.6791 15 8 3.4778 -2.0080 0.3119 16 6 3.9990 -1.9495 -2.0472 17 7 5.3870 -2.3437 -1.7717 18 6 5.9231 -3.1764 -2.8567 19 6 7.4508 -3.0931 -2.8563 20 6 8.1194 -2.3837 -1.6770 21 6 8.0831 -1.7139 -3.0529 22 6 5.4915 -4.6291 -2.6454 23 6 6.5721 -5.6363 -2.2471 24 6 5.9807 -5.6658 -3.6587 25 1 -0.3633 0.5907 -0.8409 26 1 -0.3633 -1.0236 -0.0912 27 1 -0.3634 0.4328 0.9321 28 1 3.0797 1.3444 -0.1083 29 1 1.5610 1.9273 -0.8309 30 1 2.9873 4.9178 0.7772 31 1 1.3870 -1.6578 -1.2876 32 1 1.9648 -0.1496 -2.0360 33 1 2.9607 -2.8210 0.2306 34 1 3.3949 -2.8405 -2.2183 35 1 3.9708 -1.3157 -2.9337 36 1 5.4590 -2.8168 -0.8834 37 1 5.5399 -2.8189 -3.8124 38 1 7.9684 -3.9502 -3.2873 39 1 7.4709 -1.9767 -0.9012 40 1 9.0770 -2.7739 -1.3323 41 1 9.0169 -1.6635 -3.6128 42 1 7.4108 -0.8659 -3.1829 43 1 4.4953 -4.7671 -2.2252 44 1 7.5905 -5.2642 -2.1359 45 1 6.2867 -6.4373 -1.5651 46 1 5.3065 -6.4862 -3.9048 47 1 6.6096 -5.3129 -4.4760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584338156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = 7.529096 kcal Electronic energy + Delta-G solvation = -22804.279089 eV Core-core repulsion = 19602.771461 eV Total energy + Delta-G solvation = -3201.507629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.56583 -37.89753 -36.00401 -35.62747 -33.94800 -32.44477 -29.88086 -27.38299 -26.90438 -24.78763 -23.25996 -22.83481 -22.25583 -22.07664 -21.38260 -20.07741 -19.12382 -16.63315 -16.58342 -16.30340 -15.66560 -15.49108 -14.77633 -14.65871 -14.44798 -14.14802 -13.86083 -13.51184 -13.37480 -13.10592 -12.43600 -12.17907 -12.14257 -11.89236 -11.74017 -11.38009 -11.30410 -11.21997 -11.08520 -10.90432 -10.70939 -10.62857 -10.59195 -10.41434 -10.33374 -10.18146 -9.83753 -9.72032 -9.57894 -9.10192 -8.38318 -8.35880 -7.17073 -5.97164 -3.97750 3.37786 3.41391 3.44988 3.51300 3.84217 4.11071 4.47752 4.49271 4.59693 4.74682 4.76564 4.85146 4.97703 5.04610 5.09634 5.26592 5.36061 5.38768 5.41373 5.43798 5.50166 5.56259 5.66738 5.71818 5.75783 5.78524 5.85218 5.87277 5.91462 6.05669 6.08192 6.10102 6.24420 6.37136 6.39900 6.57157 6.73049 7.04583 7.32344 7.35463 7.45757 7.84340 8.08464 8.14946 8.25163 8.60202 9.09072 9.65924 11.13919 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.003452 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.581312 B = 8109.735582 C = 8844.346297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.110 0.890 15 O -0.541 6.541 16 C 0.029 3.971 17 N -0.671 5.671 18 C 0.147 3.853 19 C -0.156 4.156 20 C -0.165 4.165 21 C -0.171 4.171 22 C -0.181 4.181 23 C -0.177 4.177 24 C -0.179 4.179 25 H 0.011 0.989 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.032 0.968 29 H -0.012 1.012 30 H 0.261 0.739 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.358 0.642 34 H 0.028 0.972 35 H 0.077 0.923 36 H 0.352 0.648 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -18.132 -9.414 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.128 0.872 15 O -0.343 6.343 16 C -0.101 4.101 17 N -0.303 5.303 18 C 0.037 3.963 19 C -0.175 4.175 20 C -0.202 4.202 21 C -0.208 4.208 22 C -0.201 4.201 23 C -0.213 4.213 24 C -0.216 4.216 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.203 0.797 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.172 0.828 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.627 -17.076 -9.028 20.767 hybrid contribution -1.373 -0.352 -0.148 1.426 sum 6.254 -17.428 -9.176 20.665 Atomic orbital electron populations 1.22191 0.88938 0.98477 1.01132 1.62037 1.06428 1.17891 1.39163 1.19776 0.95523 0.81377 0.96480 1.21115 1.34706 0.96825 1.01700 0.91992 1.24980 0.95338 0.97371 0.96944 1.69947 1.38445 1.11469 1.34100 0.86563 0.78592 0.78306 0.83962 1.20117 1.21393 1.20379 1.22670 0.95989 0.97974 0.93718 1.21982 0.95284 0.93591 0.83559 0.87190 1.86701 1.73239 1.35420 1.38955 1.22702 0.88778 0.98692 0.99918 1.60538 1.19240 1.45203 1.05282 1.20554 0.92618 0.87835 0.95287 1.22339 0.94036 0.95990 1.05093 1.22908 1.01216 1.03594 0.92512 1.22852 1.01815 0.96001 1.00133 1.23131 0.98983 0.93142 1.04878 1.23093 0.99048 1.01461 0.97727 1.22907 1.04113 1.01443 0.93187 0.97068 0.94032 0.90965 0.95038 0.99417 0.92930 0.92437 0.94953 0.79723 0.95353 0.90481 0.82796 0.90163 0.88010 0.87049 0.90017 0.89793 0.88361 0.88130 0.87903 0.89274 0.89163 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.31 60.06 0.56 1.37 16 2 N -0.53 -11.57 4.57 -244.37 -1.12 -12.68 16 3 C 0.19 5.13 4.54 -4.97 -0.02 5.11 16 4 C -0.50 -14.55 8.58 -34.44 -0.30 -14.85 16 5 H 0.06 1.77 7.10 -52.48 -0.37 1.40 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.03 0.46 4.66 -3.83 -0.02 0.44 16 13 C 0.12 1.86 3.31 -26.73 -0.09 1.77 16 14 H 0.11 2.19 6.79 -51.93 -0.35 1.83 16 15 O -0.54 -8.78 12.49 -35.23 -0.44 -9.22 16 16 C 0.03 0.36 5.20 -3.83 -0.02 0.34 16 17 N -0.67 -7.95 4.65 -106.72 -0.50 -8.45 16 18 C 0.15 1.49 2.73 -67.71 -0.18 1.31 16 19 C -0.16 -1.52 4.37 -90.62 -0.40 -1.92 16 20 C -0.17 -1.77 9.85 -26.70 -0.26 -2.03 16 21 C -0.17 -1.82 10.17 -26.70 -0.27 -2.09 16 22 C -0.18 -1.63 5.56 -90.62 -0.50 -2.14 16 23 C -0.18 -1.45 9.59 -26.69 -0.26 -1.71 16 24 C -0.18 -1.41 9.84 -26.70 -0.26 -1.67 16 25 H 0.01 0.21 8.08 -51.93 -0.42 -0.20 16 26 H 0.04 0.68 7.85 -51.93 -0.41 0.27 16 27 H 0.07 1.51 7.01 -51.93 -0.36 1.15 16 28 H 0.03 0.89 6.65 -51.93 -0.35 0.55 16 29 H -0.01 -0.34 8.07 -51.93 -0.42 -0.76 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.06 0.85 7.74 -51.93 -0.40 0.45 16 32 H 0.03 0.57 7.99 -51.92 -0.41 0.16 16 33 H 0.36 4.41 9.04 45.56 0.41 4.82 16 34 H 0.03 0.31 7.40 -51.93 -0.38 -0.07 16 35 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.35 4.33 7.49 -39.29 -0.29 4.03 16 37 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 38 H 0.10 0.90 5.95 -51.93 -0.31 0.59 16 39 H 0.11 1.39 6.76 -51.93 -0.35 1.04 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.10 0.95 7.54 -51.93 -0.39 0.56 16 44 H 0.10 0.84 5.92 -51.93 -0.31 0.54 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.71 7.83 -51.93 -0.41 0.30 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -30.67 369.27 -10.50 -41.17 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.61 Total: 7.55 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.12 Total: -14.57 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.88 Total: -47.61 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.44 Total: -9.22 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.67 -10.50 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584338156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.701 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds