Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99810 * 2 1 4 4 C 1.50701 * 109.47551 * 66.04355 * 3 2 1 5 5 H 1.08006 * 119.99811 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00243 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99905 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99971 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47106 * 60.00171 * 8 6 4 10 10 H 1.48496 * 109.46729 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.46996 * 300.00266 * 8 6 4 12 12 C 1.46893 * 111.00474 * 236.04128 * 2 1 3 13 13 C 1.53000 * 109.47542 * 200.34224 * 12 2 1 14 14 H 1.08999 * 109.46884 * 301.19337 * 13 12 2 15 15 O 1.42906 * 109.46606 * 61.19059 * 13 12 2 16 16 C 1.52995 * 109.47144 * 181.18726 * 13 12 2 17 17 N 1.46900 * 109.47044 * 179.97438 * 16 13 12 18 18 C 1.46904 * 110.99994 * 175.65522 * 17 16 13 19 19 C 1.53003 * 109.47020 * 156.87443 * 18 17 16 20 20 C 1.52999 * 117.50015 * 8.74498 * 19 18 17 21 21 C 1.52994 * 117.49690 * 300.08585 * 19 18 17 22 22 C 1.53002 * 109.47034 * 276.87256 * 18 17 16 23 23 C 1.53003 * 117.49996 * 250.09555 * 22 18 17 24 24 C 1.52995 * 117.49870 * 181.43494 * 22 18 17 25 25 H 1.08995 * 109.47073 * 54.91232 * 1 2 3 26 26 H 1.09001 * 109.47118 * 174.90720 * 1 2 3 27 27 H 1.09003 * 109.47334 * 294.90826 * 1 2 3 28 28 H 1.09001 * 109.46960 * 186.04709 * 3 2 1 29 29 H 1.08997 * 109.46804 * 306.04315 * 3 2 1 30 30 H 0.97002 * 119.99983 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46746 * 320.34880 * 12 2 1 32 32 H 1.09008 * 109.46806 * 80.34250 * 12 2 1 33 33 H 0.96698 * 113.99706 * 60.00358 * 15 13 12 34 34 H 1.09002 * 109.47454 * 300.00544 * 16 13 12 35 35 H 1.09007 * 109.47120 * 60.00343 * 16 13 12 36 36 H 1.00903 * 110.99706 * 51.70410 * 17 16 13 37 37 H 1.08998 * 109.47362 * 36.87247 * 18 17 16 38 38 H 1.09005 * 115.54598 * 154.41870 * 19 18 17 39 39 H 1.09003 * 117.49906 * 0.02562 * 20 19 18 40 40 H 1.09000 * 117.49642 * 145.01516 * 20 19 18 41 41 H 1.09001 * 117.50020 * 214.97904 * 21 19 18 42 42 H 1.08996 * 117.50317 * 359.97438 * 21 19 18 43 43 H 1.09001 * 115.54901 * 35.76929 * 22 18 17 44 44 H 1.08997 * 117.49599 * 359.97438 * 23 22 18 45 45 H 1.09003 * 117.49941 * 145.02174 * 23 22 18 46 46 H 1.09001 * 117.50152 * 214.98133 * 24 22 18 47 47 H 1.08999 * 117.49824 * 359.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 1.2984 5 1 1.0745 1.5114 2.0488 6 6 2.0276 3.3493 1.5288 7 7 2.7127 4.0016 0.6153 8 14 1.5825 4.1871 3.1380 9 1 2.1732 3.4296 4.2704 10 1 2.1147 5.5734 3.1379 11 1 0.1052 4.2245 3.2844 12 6 1.9955 -0.7660 -1.1374 13 6 3.4410 -1.1771 -0.8502 14 1 4.0450 -0.2860 -0.6791 15 8 3.4778 -2.0080 0.3119 16 6 3.9990 -1.9495 -2.0472 17 7 5.3870 -2.3437 -1.7717 18 6 5.9231 -3.1764 -2.8567 19 6 7.4508 -3.0931 -2.8563 20 6 8.1194 -2.3837 -1.6770 21 6 8.0831 -1.7139 -3.0529 22 6 5.4915 -4.6291 -2.6454 23 6 6.5721 -5.6363 -2.2471 24 6 5.9807 -5.6658 -3.6587 25 1 -0.3633 0.5907 -0.8409 26 1 -0.3633 -1.0236 -0.0912 27 1 -0.3634 0.4328 0.9321 28 1 3.0797 1.3444 -0.1083 29 1 1.5610 1.9273 -0.8309 30 1 2.9873 4.9178 0.7772 31 1 1.3870 -1.6578 -1.2876 32 1 1.9648 -0.1496 -2.0360 33 1 2.9607 -2.8210 0.2306 34 1 3.3949 -2.8405 -2.2183 35 1 3.9708 -1.3157 -2.9337 36 1 5.4590 -2.8168 -0.8834 37 1 5.5399 -2.8189 -3.8124 38 1 7.9684 -3.9502 -3.2873 39 1 7.4709 -1.9767 -0.9012 40 1 9.0770 -2.7739 -1.3323 41 1 9.0169 -1.6635 -3.6128 42 1 7.4108 -0.8659 -3.1829 43 1 4.4953 -4.7671 -2.2252 44 1 7.5905 -5.2642 -2.1359 45 1 6.2867 -6.4373 -1.5651 46 1 5.3065 -6.4862 -3.9048 47 1 6.6096 -5.3129 -4.4760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584338156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -14.087062 kcal Electronic energy + Delta-G solvation = -22805.216436 eV Core-core repulsion = 19602.771461 eV Total energy + Delta-G solvation = -3202.444976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42062 -39.24951 -37.21472 -36.73402 -34.98019 -34.60720 -31.19105 -29.36498 -28.08217 -26.23081 -24.89903 -23.59897 -23.07669 -22.84647 -22.61824 -21.75121 -19.95845 -18.61370 -17.63504 -17.33710 -17.03199 -16.61115 -16.50027 -15.91890 -15.60251 -15.50633 -15.08981 -14.84624 -14.62286 -14.25674 -13.96856 -13.73985 -13.26885 -13.11079 -13.00287 -12.86498 -12.57872 -12.50773 -12.37472 -12.33159 -12.21010 -12.11482 -11.97651 -11.53823 -11.34691 -11.30566 -11.16729 -10.97983 -10.72961 -10.62650 -10.60084 -9.26647 -8.95600 -8.20037 -6.29926 1.39784 1.43949 1.51627 2.40534 2.77041 3.03996 3.08136 3.12978 3.48104 3.68900 3.81294 3.82463 4.00862 4.06158 4.14750 4.17510 4.25604 4.27686 4.35049 4.43081 4.55792 4.58531 4.63964 4.71688 4.77492 4.79965 4.83587 4.84641 4.92859 5.07033 5.07236 5.11585 5.14276 5.25342 5.29838 5.30650 5.33703 5.38139 5.50256 5.64770 6.06034 6.14397 6.34409 6.50362 6.64941 6.85778 7.04152 7.39525 8.91045 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.003452 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.581312 B = 8109.735582 C = 8844.346297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.026 3.974 13 C 0.127 3.873 14 H 0.061 0.939 15 O -0.557 6.557 16 C 0.045 3.955 17 N -0.682 5.682 18 C 0.149 3.851 19 C -0.142 4.142 20 C -0.171 4.171 21 C -0.179 4.179 22 C -0.189 4.189 23 C -0.176 4.176 24 C -0.170 4.170 25 H 0.006 0.994 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.002 0.998 29 H -0.042 1.042 30 H 0.264 0.736 31 H 0.096 0.904 32 H 0.026 0.974 33 H 0.378 0.622 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.349 0.651 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 -20.235 -9.373 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.265 5.265 3 C 0.085 3.915 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.103 4.103 13 C 0.067 3.933 14 H 0.079 0.921 15 O -0.362 6.362 16 C -0.085 4.085 17 N -0.314 5.314 18 C 0.039 3.961 19 C -0.161 4.161 20 C -0.208 4.208 21 C -0.216 4.216 22 C -0.209 4.209 23 C -0.212 4.212 24 C -0.208 4.208 25 H 0.025 0.975 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.020 0.980 29 H -0.025 1.025 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.044 0.956 33 H 0.226 0.774 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.170 0.830 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.191 -19.215 -8.999 22.403 hybrid contribution -1.234 0.248 -0.186 1.272 sum 5.957 -18.967 -9.185 21.900 Atomic orbital electron populations 1.22218 0.87464 1.00879 1.00010 1.61931 1.07865 1.15090 1.41659 1.19370 0.93623 0.83873 0.94661 1.21457 1.34860 0.97502 1.02482 0.92088 1.25933 0.95008 0.98096 1.00752 1.70082 1.39358 1.11880 1.36258 0.85438 0.78892 0.77158 0.79154 1.19480 1.20717 1.19038 1.22799 0.97157 0.98503 0.91802 1.21663 0.93955 0.92681 0.84994 0.92081 1.86653 1.73919 1.36470 1.39198 1.22453 0.89467 0.98957 0.97618 1.60497 1.18937 1.46156 1.05765 1.20538 0.92729 0.88520 0.94282 1.22391 0.93864 0.95860 1.03941 1.22857 1.01646 1.04160 0.92131 1.22849 1.02286 0.95976 1.00464 1.23005 0.99214 0.92382 1.06267 1.23134 0.98742 1.01134 0.98224 1.22979 1.03857 1.00888 0.93036 0.97506 0.89802 0.92752 0.98006 1.02452 0.92714 0.88548 0.95599 0.77449 0.92811 0.90943 0.83046 0.90642 0.86301 0.89217 0.88656 0.88305 0.90468 0.88252 0.87887 0.88764 0.88267 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.31 127.69 1.19 2.82 16 2 N -0.54 -23.72 4.57 -927.06 -4.23 -27.96 16 3 C 0.21 11.69 4.54 85.56 0.39 12.08 16 4 C -0.52 -30.99 8.58 25.60 0.22 -30.77 16 5 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 6 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 7 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 8 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 C 0.03 0.90 4.66 86.30 0.40 1.30 16 13 C 0.13 4.14 3.31 30.59 0.10 4.25 16 14 H 0.06 2.61 6.79 -2.39 -0.02 2.59 16 15 O -0.56 -17.80 12.49 -148.98 -1.86 -19.66 16 16 C 0.05 1.09 5.20 86.30 0.45 1.54 16 17 N -0.68 -16.07 4.65 -491.55 -2.28 -18.35 16 18 C 0.15 2.86 2.73 44.92 0.12 2.98 16 19 C -0.14 -2.60 4.37 -10.80 -0.05 -2.65 16 20 C -0.17 -3.60 9.85 30.62 0.30 -3.30 16 21 C -0.18 -3.76 10.17 30.62 0.31 -3.45 16 22 C -0.19 -3.00 5.56 -10.79 -0.06 -3.06 16 23 C -0.18 -2.47 9.59 30.62 0.29 -2.18 16 24 C -0.17 -2.22 9.84 30.62 0.30 -1.92 16 25 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 26 H 0.08 2.49 7.85 -2.39 -0.02 2.47 16 27 H 0.05 2.25 7.01 -2.39 -0.02 2.24 16 28 H 0.00 0.11 6.65 -2.39 -0.02 0.10 16 29 H -0.04 -2.53 8.07 -2.39 -0.02 -2.54 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.10 2.54 7.74 -2.39 -0.02 2.53 16 32 H 0.03 0.92 7.99 -2.38 -0.02 0.90 16 33 H 0.38 8.52 9.04 -74.06 -0.67 7.85 16 34 H 0.05 1.05 7.40 -2.39 -0.02 1.03 16 35 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.35 8.52 7.49 -89.69 -0.67 7.85 16 37 H 0.08 1.53 7.88 -2.39 -0.02 1.52 16 38 H 0.12 1.81 5.95 -2.38 -0.01 1.79 16 39 H 0.09 2.31 6.76 -2.39 -0.02 2.30 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.10 1.63 7.54 -2.39 -0.02 1.61 16 44 H 0.10 1.45 5.92 -2.39 -0.01 1.44 16 45 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.10 1.21 7.83 -2.39 -0.02 1.19 16 Total: -1.00 -68.28 369.27 -2.02 -70.30 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.39 Total: 27.69 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.43 Total: -21.91 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -6.23 Total: -104.18 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.86 Total: -19.66 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -68.28 -2.02 -70.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584338156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.212 kcal (2) G-P(sol) polarization free energy of solvation -68.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds