Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 110.99872 * 2 1 4 4 C 1.50697 * 109.47223 * 293.95166 * 3 2 1 5 5 H 1.07996 * 119.99977 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99917 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00377 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47101 * 59.99686 * 8 6 4 10 10 H 1.48496 * 109.47259 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46856 * 299.99746 * 8 6 4 12 12 C 1.46902 * 110.99690 * 123.95035 * 2 1 3 13 13 C 1.53007 * 109.46973 * 164.01152 * 12 2 1 14 14 H 1.08997 * 109.46861 * 58.50904 * 13 12 2 15 15 O 1.42899 * 109.46807 * 298.51451 * 13 12 2 16 16 C 1.52996 * 109.47294 * 178.51208 * 13 12 2 17 17 N 1.46902 * 109.47147 * 185.00177 * 16 13 12 18 18 C 1.46897 * 111.00021 * 180.02562 * 17 16 13 19 19 H 1.09005 * 109.35709 * 325.27706 * 18 17 16 20 20 C 1.52875 * 109.36090 * 84.99689 * 18 17 16 21 21 C 1.53296 * 108.58424 * 174.59326 * 20 18 17 22 22 C 1.52878 * 108.59028 * 285.55571 * 21 20 18 23 23 C 1.52079 * 110.50991 * 54.88792 * 22 21 20 24 24 H 1.08996 * 114.63435 * 193.14950 * 23 22 21 25 25 C 1.52305 * 119.83604 * 49.55630 * 23 22 21 26 26 C 1.52067 * 120.02257 * 338.30284 * 23 22 21 27 27 H 1.08996 * 117.25392 * 215.56392 * 26 23 22 28 28 H 1.09004 * 109.47375 * 301.52707 * 1 2 3 29 29 H 1.09002 * 109.47472 * 61.53306 * 1 2 3 30 30 H 1.09004 * 109.47529 * 181.53030 * 1 2 3 31 31 H 1.09007 * 109.47397 * 53.95767 * 3 2 1 32 32 H 1.09003 * 109.46845 * 173.95030 * 3 2 1 33 33 H 0.96993 * 120.00959 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47289 * 44.01681 * 12 2 1 35 35 H 1.08996 * 109.47657 * 284.00995 * 12 2 1 36 36 H 0.96699 * 114.00251 * 299.99428 * 15 13 12 37 37 H 1.08997 * 109.46959 * 64.99812 * 16 13 12 38 38 H 1.09000 * 109.47210 * 305.00019 * 16 13 12 39 39 H 1.00895 * 111.00006 * 56.04125 * 17 16 13 40 40 H 1.09002 * 109.61975 * 54.86304 * 20 18 17 41 41 H 1.09006 * 109.76745 * 294.41046 * 20 18 17 42 42 H 1.09000 * 109.62009 * 165.83044 * 21 20 18 43 43 H 1.09001 * 109.61668 * 45.28754 * 21 20 18 44 44 H 1.08995 * 109.26877 * 294.62895 * 22 21 20 45 45 H 1.08998 * 109.27078 * 175.15673 * 22 21 20 46 46 H 1.08995 * 117.54051 * 357.54607 * 25 23 22 47 47 H 1.09003 * 117.53891 * 142.80078 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5289 7 7 2.7127 4.0016 -0.6154 8 14 1.5827 4.1869 -3.1381 9 1 0.1053 4.2243 -3.2847 10 1 2.1149 5.5732 -3.1381 11 1 2.1735 3.4293 -4.2704 12 6 1.9953 -0.7659 1.1377 13 6 3.4727 -1.0839 0.8985 14 1 4.0281 -0.1549 0.7699 15 8 3.6033 -1.8838 -0.2784 16 6 4.0306 -1.8495 2.1000 17 7 5.4753 -2.0501 1.9248 18 6 6.0465 -2.7842 3.0618 19 1 5.5265 -2.4965 3.9756 20 6 5.8755 -4.2860 2.8330 21 6 6.5951 -5.0369 3.9592 22 6 8.1019 -4.9544 3.7147 23 6 8.5405 -3.5050 3.5751 24 1 9.5473 -3.3711 3.1795 25 6 8.1079 -2.4789 4.6142 26 6 7.5279 -2.4372 3.1919 27 1 7.8758 -1.6260 2.5524 28 1 -0.3634 0.5374 0.8760 29 1 -0.3634 0.4898 -0.9034 30 1 -0.3634 -1.0273 0.0274 31 1 1.5610 1.9274 0.8310 32 1 3.0796 1.3444 0.1083 33 1 2.9873 4.9176 -0.7772 34 1 1.4356 -1.6956 1.2399 35 1 1.8933 -0.1781 2.0499 36 1 3.1333 -2.7277 -0.2346 37 1 3.5358 -2.8177 2.1754 38 1 3.8510 -1.2777 3.0104 39 1 5.9487 -1.1697 1.7878 40 1 6.3110 -4.5618 1.8726 41 1 4.8159 -4.5418 2.8413 42 1 6.2814 -6.0808 3.9618 43 1 6.3541 -4.5772 4.9177 44 1 8.3480 -5.4943 2.8004 45 1 8.6279 -5.4102 4.5536 46 1 7.4525 -2.8191 5.4159 47 1 8.8259 -1.7060 4.8886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584405777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -31.540820 kcal Electronic energy + Delta-G solvation = -22660.277692 eV Core-core repulsion = 19457.075864 eV Total energy + Delta-G solvation = -3203.201828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.96208 -37.98060 -35.77532 -34.65006 -33.06152 -32.44710 -30.41751 -28.43625 -27.24799 -25.72548 -24.01062 -23.23361 -22.57385 -21.44338 -21.11450 -19.96780 -18.64561 -16.66050 -16.47512 -16.10666 -15.53538 -15.00348 -14.70527 -14.60300 -14.34589 -14.28225 -14.03955 -13.55104 -13.46247 -13.11277 -12.78481 -12.46967 -12.29190 -11.95002 -11.80408 -11.56276 -11.36477 -11.28563 -11.14241 -11.08266 -10.89825 -10.68408 -10.61123 -10.45213 -10.30852 -10.08807 -9.93882 -9.70744 -9.41447 -9.09006 -8.38449 -8.32056 -7.16667 -5.98489 -3.98726 3.37311 3.40718 3.44649 3.52474 3.94775 4.37173 4.46787 4.54168 4.73538 4.78531 4.87857 4.98552 5.00281 5.09209 5.16756 5.23432 5.34783 5.36639 5.41401 5.48186 5.53894 5.58229 5.65007 5.74755 5.75901 5.80050 5.85284 5.88784 5.95704 6.03231 6.07924 6.11821 6.12708 6.25090 6.36377 6.55346 6.74336 7.07580 7.31615 7.34287 7.41756 7.84150 8.12461 8.21998 8.31915 8.60096 9.08168 9.64927 11.12705 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003104 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.830982 B = 9018.605556 C = 9628.480116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.100 0.900 15 O -0.530 6.530 16 C 0.029 3.971 17 N -0.674 5.674 18 C 0.120 3.880 19 H 0.042 0.958 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.088 4.088 23 C -0.134 4.134 24 H 0.097 0.903 25 C -0.188 4.188 26 C -0.146 4.146 27 H 0.107 0.893 28 H 0.009 0.991 29 H 0.073 0.927 30 H 0.042 0.958 31 H -0.013 1.013 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.360 0.640 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.344 0.656 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -17.051 11.686 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.118 0.882 15 O -0.333 6.333 16 C -0.101 4.101 17 N -0.305 5.305 18 C 0.011 3.989 19 H 0.060 0.940 20 C -0.144 4.144 21 C -0.161 4.161 22 C -0.125 4.125 23 C -0.152 4.152 24 H 0.116 0.884 25 C -0.225 4.225 26 C -0.164 4.164 27 H 0.125 0.875 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.005 0.995 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.205 0.795 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.164 0.836 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.410 -17.123 10.701 21.873 hybrid contribution -0.790 1.375 0.981 1.865 sum 7.620 -15.748 11.682 21.036 Atomic orbital electron populations 1.22196 0.88914 0.98861 1.00883 1.62037 1.06451 1.17808 1.39171 1.19769 0.95486 0.81484 0.96485 1.21119 1.34585 0.96803 1.01693 0.91936 1.24981 0.95347 0.97366 0.96970 1.69938 1.38574 1.11472 1.34143 0.86557 0.78616 0.78272 0.83950 1.20355 1.21413 1.20081 1.22686 0.96060 0.98141 0.93513 1.21864 0.94420 0.94012 0.83872 0.88198 1.86690 1.75425 1.33054 1.38107 1.22759 0.89118 1.00250 0.97996 1.60434 1.02985 1.26052 1.41068 1.20989 0.91402 0.94635 0.91904 0.93993 1.21561 1.00064 0.93694 0.99082 1.21618 0.95185 1.00352 0.98931 1.20842 0.95888 0.93974 1.01779 1.21799 0.98592 0.91824 1.03033 0.88445 1.23168 1.04327 1.02356 0.92630 1.22404 0.94079 1.01710 0.98211 0.87483 0.97235 0.90802 0.93878 0.99498 0.95081 0.92952 0.92158 0.95389 0.79528 0.91067 0.94810 0.83620 0.90658 0.92208 0.91646 0.92171 0.91314 0.91780 0.88884 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 60.06 0.56 1.35 16 2 N -0.53 -11.67 4.60 -244.37 -1.12 -12.80 16 3 C 0.19 5.12 4.57 -4.98 -0.02 5.10 16 4 C -0.50 -14.52 8.54 -34.44 -0.29 -14.81 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.03 0.46 4.63 -3.82 -0.02 0.44 16 13 C 0.12 1.98 3.17 -26.73 -0.08 1.89 16 14 H 0.10 1.97 6.55 -51.93 -0.34 1.63 16 15 O -0.53 -9.40 13.18 -35.23 -0.46 -9.87 16 16 C 0.03 0.38 5.12 -3.82 -0.02 0.36 16 17 N -0.67 -8.57 6.25 -106.95 -0.67 -9.24 16 18 C 0.12 1.30 2.44 -67.93 -0.17 1.13 16 19 H 0.04 0.47 7.70 -51.93 -0.40 0.07 16 20 C -0.11 -1.05 5.38 -26.64 -0.14 -1.19 16 21 C -0.12 -1.00 5.70 -26.64 -0.15 -1.15 16 22 C -0.09 -0.69 5.93 -27.26 -0.16 -0.85 16 23 C -0.13 -1.18 6.00 -91.92 -0.55 -1.73 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 25 C -0.19 -1.64 9.66 -26.75 -0.26 -1.90 16 26 C -0.15 -1.46 5.69 -90.91 -0.52 -1.98 16 27 H 0.11 1.13 7.65 -51.93 -0.40 0.73 16 28 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 29 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 30 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 31 H -0.01 -0.36 8.11 -51.92 -0.42 -0.78 16 32 H 0.03 0.88 6.38 -51.93 -0.33 0.55 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 35 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 36 H 0.36 4.99 9.05 45.56 0.41 5.41 16 37 H 0.07 0.85 7.55 -51.93 -0.39 0.45 16 38 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 39 H 0.34 4.54 8.04 -39.29 -0.32 4.22 16 40 H 0.07 0.83 8.04 -51.93 -0.42 0.42 16 41 H 0.06 0.59 7.61 -51.93 -0.39 0.20 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.49 7.11 -51.93 -0.37 0.12 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.79 7.26 -51.93 -0.38 0.41 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -31.36 363.92 -10.79 -42.15 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.81 Total: 5.47 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.93 Total: -11.86 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -1.06 Total: -48.48 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.46 Total: -9.87 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.36 -10.79 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584405777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.605 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds