Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 110.99872 * 2 1 4 4 C 1.50697 * 109.47223 * 293.95166 * 3 2 1 5 5 H 1.07996 * 119.99977 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99917 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00377 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47101 * 59.99686 * 8 6 4 10 10 H 1.48496 * 109.47259 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46856 * 299.99746 * 8 6 4 12 12 C 1.46902 * 110.99690 * 123.95035 * 2 1 3 13 13 C 1.53007 * 109.46973 * 164.01152 * 12 2 1 14 14 H 1.08997 * 109.46861 * 58.50904 * 13 12 2 15 15 O 1.42899 * 109.46807 * 298.51451 * 13 12 2 16 16 C 1.52996 * 109.47294 * 178.51208 * 13 12 2 17 17 N 1.46902 * 109.47147 * 185.00177 * 16 13 12 18 18 C 1.46897 * 111.00021 * 180.02562 * 17 16 13 19 19 H 1.09005 * 109.35709 * 325.27706 * 18 17 16 20 20 C 1.52875 * 109.36090 * 84.99689 * 18 17 16 21 21 C 1.53296 * 108.58424 * 174.59326 * 20 18 17 22 22 C 1.52878 * 108.59028 * 285.55571 * 21 20 18 23 23 C 1.52079 * 110.50991 * 54.88792 * 22 21 20 24 24 H 1.08996 * 114.63435 * 193.14950 * 23 22 21 25 25 C 1.52305 * 119.83604 * 49.55630 * 23 22 21 26 26 C 1.52067 * 120.02257 * 338.30284 * 23 22 21 27 27 H 1.08996 * 117.25392 * 215.56392 * 26 23 22 28 28 H 1.09004 * 109.47375 * 301.52707 * 1 2 3 29 29 H 1.09002 * 109.47472 * 61.53306 * 1 2 3 30 30 H 1.09004 * 109.47529 * 181.53030 * 1 2 3 31 31 H 1.09007 * 109.47397 * 53.95767 * 3 2 1 32 32 H 1.09003 * 109.46845 * 173.95030 * 3 2 1 33 33 H 0.96993 * 120.00959 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47289 * 44.01681 * 12 2 1 35 35 H 1.08996 * 109.47657 * 284.00995 * 12 2 1 36 36 H 0.96699 * 114.00251 * 299.99428 * 15 13 12 37 37 H 1.08997 * 109.46959 * 64.99812 * 16 13 12 38 38 H 1.09000 * 109.47210 * 305.00019 * 16 13 12 39 39 H 1.00895 * 111.00006 * 56.04125 * 17 16 13 40 40 H 1.09002 * 109.61975 * 54.86304 * 20 18 17 41 41 H 1.09006 * 109.76745 * 294.41046 * 20 18 17 42 42 H 1.09000 * 109.62009 * 165.83044 * 21 20 18 43 43 H 1.09001 * 109.61668 * 45.28754 * 21 20 18 44 44 H 1.08995 * 109.26877 * 294.62895 * 22 21 20 45 45 H 1.08998 * 109.27078 * 175.15673 * 22 21 20 46 46 H 1.08995 * 117.54051 * 357.54607 * 25 23 22 47 47 H 1.09003 * 117.53891 * 142.80078 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5289 7 7 2.7127 4.0016 -0.6154 8 14 1.5827 4.1869 -3.1381 9 1 0.1053 4.2243 -3.2847 10 1 2.1149 5.5732 -3.1381 11 1 2.1735 3.4293 -4.2704 12 6 1.9953 -0.7659 1.1377 13 6 3.4727 -1.0839 0.8985 14 1 4.0281 -0.1549 0.7699 15 8 3.6033 -1.8838 -0.2784 16 6 4.0306 -1.8495 2.1000 17 7 5.4753 -2.0501 1.9248 18 6 6.0465 -2.7842 3.0618 19 1 5.5265 -2.4965 3.9756 20 6 5.8755 -4.2860 2.8330 21 6 6.5951 -5.0369 3.9592 22 6 8.1019 -4.9544 3.7147 23 6 8.5405 -3.5050 3.5751 24 1 9.5473 -3.3711 3.1795 25 6 8.1079 -2.4789 4.6142 26 6 7.5279 -2.4372 3.1919 27 1 7.8758 -1.6260 2.5524 28 1 -0.3634 0.5374 0.8760 29 1 -0.3634 0.4898 -0.9034 30 1 -0.3634 -1.0273 0.0274 31 1 1.5610 1.9274 0.8310 32 1 3.0796 1.3444 0.1083 33 1 2.9873 4.9176 -0.7772 34 1 1.4356 -1.6956 1.2399 35 1 1.8933 -0.1781 2.0499 36 1 3.1333 -2.7277 -0.2346 37 1 3.5358 -2.8177 2.1754 38 1 3.8510 -1.2777 3.0104 39 1 5.9487 -1.1697 1.7878 40 1 6.3110 -4.5618 1.8726 41 1 4.8159 -4.5418 2.8413 42 1 6.2814 -6.0808 3.9618 43 1 6.3541 -4.5772 4.9177 44 1 8.3480 -5.4943 2.8004 45 1 8.6279 -5.4102 4.5536 46 1 7.4525 -2.8191 5.4159 47 1 8.8259 -1.7060 4.8886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584405777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -54.771860 kcal Electronic energy + Delta-G solvation = -22661.285065 eV Core-core repulsion = 19457.075864 eV Total energy + Delta-G solvation = -3204.209201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73773 -39.39504 -37.28422 -35.80251 -34.60539 -33.76948 -31.59133 -29.70759 -29.12139 -26.97293 -25.52203 -24.33143 -23.64447 -22.55646 -22.04863 -21.59398 -19.37582 -18.60886 -17.62986 -17.26274 -16.87673 -16.60892 -16.19519 -15.78859 -15.55287 -15.31687 -15.08078 -15.02106 -14.66812 -14.17223 -14.08221 -13.92023 -13.36807 -13.31189 -13.10657 -12.90699 -12.76404 -12.59659 -12.52124 -12.34148 -12.32017 -12.16037 -11.97270 -11.84730 -11.50535 -11.33070 -11.18817 -10.82216 -10.78245 -10.60159 -10.50038 -9.31718 -8.95335 -8.20674 -6.30063 1.39578 1.43687 1.51262 2.40239 2.79746 2.91702 3.11826 3.40592 3.62179 3.75463 3.84246 3.94616 4.03723 4.11992 4.20296 4.26232 4.33208 4.38702 4.43871 4.44806 4.49080 4.57802 4.59728 4.68011 4.73561 4.77147 4.86549 4.90073 5.06574 5.07375 5.10961 5.14818 5.18352 5.24493 5.29542 5.30498 5.32126 5.40929 5.49939 5.64554 6.05681 6.13421 6.33527 6.37415 6.65025 6.85450 7.14059 7.39187 8.90401 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003104 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.830982 B = 9018.605556 C = 9628.480116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.027 3.973 13 C 0.127 3.873 14 H 0.058 0.942 15 O -0.552 6.552 16 C 0.044 3.956 17 N -0.683 5.683 18 C 0.123 3.877 19 H 0.041 0.959 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.088 4.088 23 C -0.130 4.130 24 H 0.101 0.899 25 C -0.180 4.180 26 C -0.165 4.165 27 H 0.095 0.905 28 H 0.007 0.993 29 H 0.054 0.946 30 H 0.083 0.917 31 H -0.042 1.042 32 H 0.004 0.996 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.025 0.975 36 H 0.378 0.622 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.337 0.663 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -18.825 11.942 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.195 1.195 12 C -0.103 4.103 13 C 0.067 3.933 14 H 0.076 0.924 15 O -0.357 6.357 16 C -0.086 4.086 17 N -0.314 5.314 18 C 0.014 3.986 19 H 0.059 0.941 20 C -0.141 4.141 21 C -0.157 4.157 22 C -0.125 4.125 23 C -0.149 4.149 24 H 0.119 0.881 25 C -0.217 4.217 26 C -0.183 4.183 27 H 0.113 0.887 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.102 0.898 31 H -0.025 1.025 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.043 0.957 36 H 0.225 0.775 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.156 0.844 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.988 -18.935 10.969 23.295 hybrid contribution -0.648 1.879 0.923 2.192 sum 7.340 -17.056 11.892 22.050 Atomic orbital electron populations 1.22221 0.87445 1.01164 0.99855 1.61939 1.07904 1.15132 1.41663 1.19379 0.93754 0.83863 0.94654 1.21454 1.34771 0.97488 1.02489 0.92127 1.25920 0.95035 0.98078 1.00732 1.70068 1.39424 1.11880 1.36230 0.85447 0.78900 0.77155 0.79196 1.19054 1.20700 1.19516 1.22804 0.96906 0.98820 0.91727 1.21645 0.93558 0.93009 0.85123 0.92377 1.86641 1.76024 1.34239 1.38825 1.22560 0.89448 1.00600 0.96001 1.60483 1.02797 1.25813 1.42353 1.21017 0.91683 0.94964 0.90937 0.94139 1.21535 1.00330 0.93060 0.99192 1.21601 0.95078 1.00840 0.98133 1.20877 0.95881 0.93243 1.02482 1.21911 0.98285 0.92254 1.02403 0.88083 1.23208 1.04113 1.02425 0.91999 1.22374 0.94078 1.02528 0.99357 0.88664 0.97395 0.92695 0.89817 1.02467 0.97775 0.92718 0.88395 0.95666 0.77472 0.88959 0.94560 0.84444 0.91998 0.92046 0.90301 0.91920 0.91198 0.90304 0.88358 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.32 127.69 1.19 2.79 16 2 N -0.54 -23.91 4.60 -927.04 -4.27 -28.18 16 3 C 0.21 11.57 4.57 85.56 0.39 11.96 16 4 C -0.52 -30.87 8.54 25.60 0.22 -30.66 16 5 H 0.06 3.52 7.10 -2.91 -0.02 3.49 16 6 C 0.00 0.01 5.46 84.66 0.46 0.47 16 7 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 8 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.03 0.91 4.63 86.31 0.40 1.31 16 13 C 0.13 4.27 3.17 30.60 0.10 4.36 16 14 H 0.06 2.45 6.55 -2.39 -0.02 2.43 16 15 O -0.55 -19.36 13.18 -148.98 -1.96 -21.33 16 16 C 0.04 1.11 5.12 86.30 0.44 1.55 16 17 N -0.68 -17.41 6.25 -492.29 -3.08 -20.49 16 18 C 0.12 2.57 2.44 44.78 0.11 2.68 16 19 H 0.04 0.86 7.70 -2.38 -0.02 0.84 16 20 C -0.10 -1.89 5.38 30.65 0.16 -1.72 16 21 C -0.12 -1.66 5.70 30.65 0.17 -1.49 16 22 C -0.09 -1.19 5.93 30.25 0.18 -1.01 16 23 C -0.13 -2.11 6.00 -11.64 -0.07 -2.18 16 24 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 25 C -0.18 -2.94 9.66 30.58 0.30 -2.64 16 26 C -0.16 -3.25 5.69 -10.98 -0.06 -3.32 16 27 H 0.10 2.08 7.65 -2.39 -0.02 2.06 16 28 H 0.01 0.29 8.13 -2.38 -0.02 0.27 16 29 H 0.05 2.30 6.90 -2.39 -0.02 2.28 16 30 H 0.08 2.53 7.97 -2.39 -0.02 2.51 16 31 H -0.04 -2.52 8.11 -2.38 -0.02 -2.54 16 32 H 0.00 0.25 6.38 -2.39 -0.02 0.24 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.10 2.64 7.88 -2.39 -0.02 2.62 16 35 H 0.03 0.89 8.05 -2.39 -0.02 0.87 16 36 H 0.38 9.84 9.05 -74.06 -0.67 9.17 16 37 H 0.09 1.97 7.55 -2.39 -0.02 1.95 16 38 H 0.04 0.91 8.05 -2.39 -0.02 0.89 16 39 H 0.34 9.31 8.04 -89.70 -0.72 8.59 16 40 H 0.06 1.30 8.04 -2.39 -0.02 1.29 16 41 H 0.06 1.09 7.61 -2.38 -0.02 1.07 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.86 7.11 -2.39 -0.02 0.85 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 1.50 7.26 -2.39 -0.02 1.48 16 47 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -68.76 363.92 -3.45 -72.21 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.45 Total: 25.49 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 3.99 Total: -17.89 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -7.06 Total: -106.15 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.96 Total: -21.33 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.76 -3.45 -72.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584405777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.435 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds