Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47665 * 2 1 4 4 C 1.50696 * 109.47389 * 239.99783 * 2 1 3 5 5 H 1.08000 * 120.00430 * 240.00206 * 4 2 1 6 6 C 1.37882 * 120.00267 * 60.00062 * 4 2 1 7 7 N 1.31517 * 120.00285 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99610 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47114 * 269.99979 * 8 6 4 10 10 H 1.48498 * 109.47137 * 30.00376 * 8 6 4 11 11 H 1.48501 * 109.46940 * 150.00301 * 8 6 4 12 12 N 1.46903 * 109.47223 * 119.99510 * 2 1 3 13 13 C 1.46891 * 111.00091 * 275.00052 * 12 2 1 14 14 H 1.08995 * 109.40312 * 35.17517 * 13 12 2 15 15 C 1.53076 * 109.39959 * 154.99997 * 13 12 2 16 16 C 1.53347 * 108.42567 * 169.02922 * 15 13 12 17 17 C 1.52918 * 108.67392 * 292.46894 * 16 15 13 18 18 N 1.45757 * 110.48971 * 50.74993 * 17 16 15 19 19 C 1.46492 * 117.94426 * 160.92257 * 18 17 16 20 20 C 1.53000 * 109.46863 * 89.17720 * 19 18 17 21 21 C 1.52996 * 109.47523 * 65.15663 * 20 19 18 22 22 C 1.52999 * 109.47278 * 185.15975 * 20 19 18 23 23 C 1.53004 * 109.47251 * 305.15856 * 20 19 18 24 24 C 1.33352 * 124.10493 * 340.93037 * 18 17 16 25 25 O 1.21286 * 118.24282 * 182.22344 * 24 18 17 26 26 H 1.08998 * 109.47349 * 300.00575 * 1 2 3 27 27 H 1.09006 * 109.46909 * 60.00390 * 1 2 3 28 28 H 1.08996 * 109.47379 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99556 * 180.02562 * 7 6 4 30 30 H 1.00900 * 110.99657 * 151.04125 * 12 2 1 31 31 H 1.09003 * 109.66861 * 288.76245 * 15 13 12 32 32 H 1.08995 * 109.67436 * 49.25422 * 15 13 12 33 33 H 1.09006 * 109.60004 * 52.22441 * 16 15 13 34 34 H 1.08999 * 109.60532 * 172.70753 * 16 15 13 35 35 H 1.08998 * 109.29941 * 171.06892 * 17 16 15 36 36 H 1.09001 * 109.29852 * 290.44143 * 17 16 15 37 37 H 1.09005 * 109.46900 * 209.17113 * 19 18 17 38 38 H 1.08996 * 109.47846 * 329.17783 * 19 18 17 39 39 H 1.09003 * 109.46840 * 59.99778 * 21 20 19 40 40 H 1.09000 * 109.47437 * 180.02562 * 21 20 19 41 41 H 1.09007 * 109.47282 * 300.00652 * 21 20 19 42 42 H 1.09001 * 109.47637 * 59.99802 * 22 20 19 43 43 H 1.09000 * 109.47289 * 179.97438 * 22 20 19 44 44 H 1.09003 * 109.46749 * 300.00016 * 22 20 19 45 45 H 1.08997 * 109.47157 * 67.53987 * 23 20 19 46 46 H 1.09000 * 109.47144 * 187.54493 * 23 20 19 47 47 H 1.09001 * 109.46761 * 307.54175 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 2.1374 -0.8597 -3.5565 8 14 0.6259 1.2798 -2.6542 9 1 -0.8020 0.8744 -2.6994 10 1 0.8493 2.1773 -1.4924 11 1 0.9773 1.9952 -3.9072 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3468 14 1 1.2554 0.9305 2.2912 15 6 1.9768 -0.5815 3.6450 16 6 2.3184 0.3450 4.8183 17 6 3.7989 0.7178 4.7328 18 7 4.1266 1.2032 3.3980 19 6 5.3499 1.9926 3.2357 20 6 6.5252 1.0576 2.9433 21 6 6.3078 0.3720 1.5930 22 6 7.8227 1.8672 2.9013 23 6 6.6203 -0.0015 4.0435 24 6 3.3826 0.9737 2.3154 25 8 3.7770 1.3940 1.2483 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.9033 -0.5281 -4.4375 30 1 2.9173 -1.1205 1.0287 31 1 0.9614 -0.9605 3.7602 32 1 2.6787 -1.4150 3.6185 33 1 1.7100 1.2476 4.7605 34 1 2.1246 -0.1699 5.7593 35 1 4.0169 1.4970 5.4631 36 1 4.4050 -0.1603 4.9557 37 1 5.2252 2.6896 2.4069 38 1 5.5476 2.5490 4.1519 39 1 6.2400 1.1265 0.8092 40 1 7.1449 -0.2944 1.3849 41 1 5.3833 -0.2048 1.6229 42 1 7.9777 2.3556 3.8633 43 1 8.6601 1.2010 2.6934 44 1 7.7549 2.6217 2.1175 45 1 5.7558 -0.6629 3.9868 46 1 7.5323 -0.5833 3.9098 47 1 6.6406 0.4873 5.0175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = -36.601624 kcal Electronic energy + Delta-G solvation = -24546.756401 eV Core-core repulsion = 21343.335120 eV Total energy + Delta-G solvation = -3203.421281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71094 -37.47275 -36.18972 -35.48559 -32.98138 -31.64805 -29.84082 -27.70441 -27.15665 -26.84990 -26.47174 -24.95736 -22.98642 -22.12764 -19.87219 -19.16056 -18.35801 -16.86099 -16.41492 -16.20343 -15.83921 -15.17703 -14.55577 -14.39736 -13.98104 -13.90885 -13.49672 -13.24588 -13.11417 -13.00492 -12.87602 -12.44720 -12.17270 -12.08059 -11.84890 -11.65934 -11.49580 -11.37718 -11.21844 -11.05149 -10.96131 -10.79021 -10.67465 -10.60534 -10.52439 -10.39556 -10.00542 -9.43816 -9.38628 -8.91766 -8.49419 -8.43734 -7.48454 -5.97683 -3.95001 3.02747 3.20132 3.35046 3.46089 3.49813 4.50633 4.65612 4.69546 4.74579 4.82832 4.93675 4.94179 5.04559 5.19057 5.36410 5.40277 5.42005 5.52839 5.54904 5.58279 5.69769 5.74895 5.77465 5.79962 5.84481 5.93597 6.00060 6.09184 6.10174 6.18421 6.29893 6.30715 6.41394 6.44662 6.60495 6.67351 6.73423 6.77406 6.94112 7.52702 7.62216 7.72257 7.95038 8.29370 8.58187 8.69268 9.05824 9.65256 11.15787 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.005878 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.008089 B = 4762.263768 C = 5613.011309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.177 3.823 3 H 0.024 0.976 4 C -0.507 4.507 5 H 0.075 0.925 6 C 0.071 3.929 7 N -0.902 5.902 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.268 1.268 11 H -0.299 1.299 12 N -0.649 5.649 13 C 0.075 3.925 14 H 0.098 0.902 15 C -0.109 4.109 16 C -0.136 4.136 17 C 0.111 3.889 18 N -0.604 5.604 19 C 0.118 3.882 20 C -0.084 4.084 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.140 4.140 24 C 0.481 3.519 25 O -0.521 6.521 26 H 0.023 0.977 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.262 0.738 30 H 0.342 0.658 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 4.398 20.692 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.068 3.932 3 H 0.042 0.958 4 C -0.546 4.546 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.541 5.541 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.193 1.193 11 H -0.227 1.227 12 N -0.279 5.279 13 C -0.039 4.039 14 H 0.116 0.884 15 C -0.147 4.147 16 C -0.174 4.174 17 C -0.012 4.012 18 N -0.339 5.339 19 C -0.005 4.005 20 C -0.085 4.085 21 C -0.187 4.187 22 C -0.196 4.196 23 C -0.197 4.197 24 C 0.267 3.733 25 O -0.395 6.395 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.346 4.348 20.049 21.200 hybrid contribution 0.211 1.317 -0.395 1.391 sum 5.558 5.665 19.654 21.196 Atomic orbital electron populations 1.22120 0.99076 1.00861 0.97617 1.19662 0.91002 0.94601 0.87906 0.95849 1.21000 1.31705 1.13255 0.88595 0.90682 1.24877 0.95855 0.96541 0.95753 1.69896 1.46004 1.40409 0.97810 0.86814 0.80327 0.83955 0.76821 1.20742 1.19272 1.22671 1.60906 1.32430 1.29416 1.05188 1.21693 0.93348 0.94573 0.94321 0.88408 1.21649 1.03161 0.97899 0.92027 1.21905 0.95242 1.00627 0.99672 1.21530 0.96449 0.99468 0.83751 1.47481 1.24089 1.54220 1.08134 1.21566 0.83588 0.93477 1.01894 1.20955 0.94840 0.95983 0.96742 1.21817 1.01024 1.00474 0.95376 1.21806 0.96498 0.99885 1.01362 1.21991 1.01722 0.98514 0.97443 1.21732 0.87321 0.80701 0.83557 1.90802 1.71134 1.49485 1.28125 0.95819 0.94431 0.92436 0.92790 0.83887 0.90352 0.91186 0.91266 0.90026 0.91473 0.91492 0.89779 0.91423 0.91960 0.93811 0.92423 0.93014 0.92543 0.92497 0.92155 0.92994 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.88 37.16 0.33 -2.87 16 2 C 0.18 4.39 1.71 -68.87 -0.12 4.28 16 3 H 0.02 0.64 5.54 -51.93 -0.29 0.36 16 4 C -0.51 -14.87 9.17 -34.44 -0.32 -15.18 16 5 H 0.08 2.37 7.86 -52.49 -0.41 1.96 16 6 C 0.07 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -28.65 13.96 55.43 0.77 -27.88 16 8 Si 0.89 23.39 24.37 -169.99 -4.14 19.25 16 9 H -0.28 -7.08 6.87 56.52 0.39 -6.69 16 10 H -0.27 -6.93 6.53 56.52 0.37 -6.56 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 N -0.65 -13.48 5.95 -102.41 -0.61 -14.09 16 13 C 0.07 1.26 2.56 -69.08 -0.18 1.08 16 14 H 0.10 1.70 7.11 -51.93 -0.37 1.33 16 15 C -0.11 -1.34 5.64 -26.51 -0.15 -1.49 16 16 C -0.14 -1.25 6.02 -26.59 -0.16 -1.41 16 17 C 0.11 1.05 5.59 -4.48 -0.03 1.02 16 18 N -0.60 -7.90 2.38 -174.97 -0.42 -8.31 16 19 C 0.12 1.46 4.53 -4.05 -0.02 1.44 16 20 C -0.08 -1.00 0.85 -154.51 -0.13 -1.13 16 21 C -0.13 -2.01 7.12 37.16 0.26 -1.74 16 22 C -0.14 -1.39 8.47 37.16 0.31 -1.08 16 23 C -0.14 -1.41 7.02 37.16 0.26 -1.15 16 24 C 0.48 8.27 5.59 -11.87 -0.07 8.20 16 25 O -0.52 -11.32 12.05 5.55 0.07 -11.25 16 26 H 0.02 0.46 7.42 -51.93 -0.39 0.08 16 27 H 0.04 0.90 3.27 -51.93 -0.17 0.73 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.34 7.48 7.96 -39.29 -0.31 7.16 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 36 H 0.07 0.59 5.65 -51.93 -0.29 0.29 16 37 H 0.08 1.25 7.18 -51.93 -0.37 0.88 16 38 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 39 H 0.06 1.10 7.82 -51.93 -0.41 0.69 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.03 6.07 -51.92 -0.32 0.71 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.66 5.98 -51.93 -0.31 0.35 16 46 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 47 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -33.06 343.29 -7.53 -40.59 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.28 Total: 4.50 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.09 Total: -7.98 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.25 Total: -50.28 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.25 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.14 Total: 19.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.06 -7.53 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.985 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds