Wall clock time and date at job start Wed Apr 15 2020 11:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47665 * 2 1 4 4 C 1.50696 * 109.47389 * 239.99783 * 2 1 3 5 5 H 1.08000 * 120.00430 * 240.00206 * 4 2 1 6 6 C 1.37882 * 120.00267 * 60.00062 * 4 2 1 7 7 N 1.31517 * 120.00285 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99610 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47114 * 269.99979 * 8 6 4 10 10 H 1.48498 * 109.47137 * 30.00376 * 8 6 4 11 11 H 1.48501 * 109.46940 * 150.00301 * 8 6 4 12 12 N 1.46903 * 109.47223 * 119.99510 * 2 1 3 13 13 C 1.46891 * 111.00091 * 275.00052 * 12 2 1 14 14 H 1.08995 * 109.40312 * 35.17517 * 13 12 2 15 15 C 1.53076 * 109.39959 * 154.99997 * 13 12 2 16 16 C 1.53347 * 108.42567 * 169.02922 * 15 13 12 17 17 C 1.52918 * 108.67392 * 292.46894 * 16 15 13 18 18 N 1.45757 * 110.48971 * 50.74993 * 17 16 15 19 19 C 1.46492 * 117.94426 * 160.92257 * 18 17 16 20 20 C 1.53000 * 109.46863 * 89.17720 * 19 18 17 21 21 C 1.52996 * 109.47523 * 65.15663 * 20 19 18 22 22 C 1.52999 * 109.47278 * 185.15975 * 20 19 18 23 23 C 1.53004 * 109.47251 * 305.15856 * 20 19 18 24 24 C 1.33352 * 124.10493 * 340.93037 * 18 17 16 25 25 O 1.21286 * 118.24282 * 182.22344 * 24 18 17 26 26 H 1.08998 * 109.47349 * 300.00575 * 1 2 3 27 27 H 1.09006 * 109.46909 * 60.00390 * 1 2 3 28 28 H 1.08996 * 109.47379 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99556 * 180.02562 * 7 6 4 30 30 H 1.00900 * 110.99657 * 151.04125 * 12 2 1 31 31 H 1.09003 * 109.66861 * 288.76245 * 15 13 12 32 32 H 1.08995 * 109.67436 * 49.25422 * 15 13 12 33 33 H 1.09006 * 109.60004 * 52.22441 * 16 15 13 34 34 H 1.08999 * 109.60532 * 172.70753 * 16 15 13 35 35 H 1.08998 * 109.29941 * 171.06892 * 17 16 15 36 36 H 1.09001 * 109.29852 * 290.44143 * 17 16 15 37 37 H 1.09005 * 109.46900 * 209.17113 * 19 18 17 38 38 H 1.08996 * 109.47846 * 329.17783 * 19 18 17 39 39 H 1.09003 * 109.46840 * 59.99778 * 21 20 19 40 40 H 1.09000 * 109.47437 * 180.02562 * 21 20 19 41 41 H 1.09007 * 109.47282 * 300.00652 * 21 20 19 42 42 H 1.09001 * 109.47637 * 59.99802 * 22 20 19 43 43 H 1.09000 * 109.47289 * 179.97438 * 22 20 19 44 44 H 1.09003 * 109.46749 * 300.00016 * 22 20 19 45 45 H 1.08997 * 109.47157 * 67.53987 * 23 20 19 46 46 H 1.09000 * 109.47144 * 187.54493 * 23 20 19 47 47 H 1.09001 * 109.46761 * 307.54175 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 2.1374 -0.8597 -3.5565 8 14 0.6259 1.2798 -2.6542 9 1 -0.8020 0.8744 -2.6994 10 1 0.8493 2.1773 -1.4924 11 1 0.9773 1.9952 -3.9072 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3468 14 1 1.2554 0.9305 2.2912 15 6 1.9768 -0.5815 3.6450 16 6 2.3184 0.3450 4.8183 17 6 3.7989 0.7178 4.7328 18 7 4.1266 1.2032 3.3980 19 6 5.3499 1.9926 3.2357 20 6 6.5252 1.0576 2.9433 21 6 6.3078 0.3720 1.5930 22 6 7.8227 1.8672 2.9013 23 6 6.6203 -0.0015 4.0435 24 6 3.3826 0.9737 2.3154 25 8 3.7770 1.3940 1.2483 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.9033 -0.5281 -4.4375 30 1 2.9173 -1.1205 1.0287 31 1 0.9614 -0.9605 3.7602 32 1 2.6787 -1.4150 3.6185 33 1 1.7100 1.2476 4.7605 34 1 2.1246 -0.1699 5.7593 35 1 4.0169 1.4970 5.4631 36 1 4.4050 -0.1603 4.9557 37 1 5.2252 2.6896 2.4069 38 1 5.5476 2.5490 4.1519 39 1 6.2400 1.1265 0.8092 40 1 7.1449 -0.2944 1.3849 41 1 5.3833 -0.2048 1.6229 42 1 7.9777 2.3556 3.8633 43 1 8.6601 1.2010 2.6934 44 1 7.7549 2.6217 2.1175 45 1 5.7558 -0.6629 3.9868 46 1 7.5323 -0.5833 3.9098 47 1 6.6406 0.4873 5.0175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585115966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:54 Heat of formation + Delta-G solvation = -60.488164 kcal Electronic energy + Delta-G solvation = -24547.792199 eV Core-core repulsion = 21343.335120 eV Total energy + Delta-G solvation = -3204.457079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90865 -38.70631 -37.47527 -36.93225 -34.72747 -33.30968 -31.34784 -28.84923 -28.21673 -28.01675 -27.47954 -27.08408 -24.21813 -23.17726 -21.79711 -20.22424 -19.50079 -18.78148 -17.82297 -17.45451 -17.05472 -16.88146 -15.92020 -15.53358 -15.28167 -15.09981 -15.04389 -14.72372 -14.42644 -14.21050 -14.15743 -14.02387 -13.61626 -13.22399 -13.07313 -12.91774 -12.83357 -12.72358 -12.54713 -12.35635 -12.21314 -12.17911 -12.03662 -11.83847 -11.75213 -11.58956 -11.48802 -11.44251 -11.05711 -10.81699 -10.74671 -9.51662 -9.17689 -8.32984 -6.34498 1.22878 1.31161 1.40930 1.70421 2.13698 2.28640 3.03365 3.36309 3.64542 3.82927 3.87246 3.94201 3.98702 4.06061 4.17129 4.37689 4.47207 4.57588 4.57993 4.63656 4.67242 4.70045 4.73801 4.76997 4.86148 4.88470 4.90752 4.95099 5.01627 5.03929 5.07395 5.14190 5.17755 5.23226 5.31343 5.37382 5.44251 5.51093 5.52592 5.63255 5.68594 5.92797 6.33973 6.50076 6.61806 6.74554 7.29298 7.32906 8.84229 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.005878 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.008089 B = 4762.263768 C = 5613.011309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.185 3.815 3 H 0.000 1.000 4 C -0.512 4.512 5 H 0.034 0.966 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.953 3.047 9 H -0.256 1.256 10 H -0.263 1.263 11 H -0.298 1.298 12 N -0.646 5.646 13 C 0.070 3.930 14 H 0.094 0.906 15 C -0.101 4.101 16 C -0.127 4.127 17 C 0.100 3.900 18 N -0.593 5.593 19 C 0.116 3.884 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.134 4.134 24 C 0.476 3.524 25 O -0.580 6.580 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.265 0.735 30 H 0.330 0.670 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.026 0.974 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 5.533 25.019 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.076 3.924 3 H 0.018 0.982 4 C -0.551 4.551 5 H 0.052 0.948 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.780 3.220 9 H -0.182 1.182 10 H -0.188 1.188 11 H -0.226 1.226 12 N -0.275 5.275 13 C -0.044 4.044 14 H 0.112 0.888 15 C -0.139 4.139 16 C -0.165 4.165 17 C -0.021 4.021 18 N -0.325 5.325 19 C -0.007 4.007 20 C -0.081 4.081 21 C -0.181 4.181 22 C -0.191 4.191 23 C -0.191 4.191 24 C 0.263 3.737 25 O -0.460 6.460 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.788 5.472 24.464 25.522 hybrid contribution 0.504 0.899 -1.679 1.970 sum 5.292 6.371 22.785 24.244 Atomic orbital electron populations 1.21988 0.96961 1.01270 0.98857 1.19403 0.92479 0.92764 0.87765 0.98240 1.21321 1.30760 1.12085 0.90920 0.94809 1.25748 0.97508 0.99814 0.95376 1.70040 1.47943 1.42485 0.98464 0.85795 0.79539 0.79939 0.76678 1.18199 1.18809 1.22622 1.60914 1.31630 1.30135 1.04843 1.21882 0.93171 0.94653 0.94667 0.88822 1.21624 1.03769 0.97873 0.90660 1.21920 0.94872 1.00219 0.99504 1.21937 0.97079 1.01198 0.81882 1.47494 1.23404 1.52896 1.08693 1.21674 0.83287 0.93182 1.02532 1.20938 0.95687 0.96527 0.94960 1.21742 0.99625 0.99452 0.97243 1.21771 0.95369 0.99477 1.02501 1.21942 1.01503 0.97769 0.97845 1.21722 0.87753 0.80388 0.83823 1.90787 1.72576 1.52029 1.30582 0.92319 0.95292 0.92445 0.92582 0.85298 0.89521 0.91468 0.90998 0.86319 0.88006 0.90018 0.93173 0.87328 0.95486 0.93347 0.95368 0.90153 0.92158 0.93849 0.93161 0.92626 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.88 71.98 0.64 -5.36 16 2 C 0.19 9.47 1.71 44.17 0.08 9.54 16 3 H 0.00 0.00 5.54 -2.38 -0.01 -0.02 16 4 C -0.51 -31.63 9.17 25.60 0.23 -31.39 16 5 H 0.03 2.29 7.86 -2.91 -0.02 2.27 16 6 C 0.01 0.79 5.45 84.66 0.46 1.25 16 7 N -0.95 -62.84 13.96 21.45 0.30 -62.55 16 8 Si 0.95 49.30 24.37 68.60 1.67 50.97 16 9 H -0.26 -12.22 6.87 99.48 0.68 -11.53 16 10 H -0.26 -13.33 6.53 99.48 0.65 -12.68 16 11 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 12 N -0.65 -27.66 5.95 -477.91 -2.84 -30.50 16 13 C 0.07 2.32 2.56 44.03 0.11 2.43 16 14 H 0.09 3.16 7.11 -2.39 -0.02 3.15 16 15 C -0.10 -2.24 5.64 30.74 0.17 -2.06 16 16 C -0.13 -1.75 6.02 30.68 0.18 -1.57 16 17 C 0.10 1.44 5.59 86.49 0.48 1.92 16 18 N -0.59 -14.48 2.38 -826.65 -1.97 -16.45 16 19 C 0.12 2.69 4.53 86.38 0.39 3.08 16 20 C -0.08 -1.81 0.85 -52.18 -0.04 -1.85 16 21 C -0.12 -4.06 7.12 71.98 0.51 -3.55 16 22 C -0.13 -2.46 8.47 71.98 0.61 -1.85 16 23 C -0.13 -2.29 7.02 71.98 0.51 -1.78 16 24 C 0.48 16.61 5.59 87.71 0.49 17.10 16 25 O -0.58 -26.80 12.05 -3.05 -0.04 -26.83 16 26 H 0.06 2.21 7.42 -2.39 -0.02 2.19 16 27 H 0.03 1.34 3.27 -2.38 -0.01 1.33 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.27 16.44 8.31 -92.71 -0.77 15.67 16 30 H 0.33 15.39 7.96 -89.69 -0.71 14.67 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.07 1.02 8.12 -2.38 -0.02 1.00 16 34 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.89 7.92 -2.39 -0.02 0.87 16 36 H 0.08 1.03 5.65 -2.39 -0.01 1.01 16 37 H 0.05 1.53 7.18 -2.38 -0.02 1.51 16 38 H 0.11 1.65 7.87 -2.39 -0.02 1.63 16 39 H 0.03 1.03 7.82 -2.39 -0.02 1.02 16 40 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.03 1.06 6.07 -2.38 -0.01 1.05 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.05 0.97 5.98 -2.39 -0.01 0.95 16 46 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 47 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 Total: -1.00 -79.08 343.29 2.10 -76.98 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.15 Total: 22.46 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 4.83 Total: -14.08 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -4.51 Total: -109.49 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.04 Total: -26.83 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.67 Total: 50.97 kcal Total: -79.08 2.10 -76.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.493 kcal (2) G-P(sol) polarization free energy of solvation -79.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds