Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47172 * 2 1 4 4 C 1.50701 * 109.46991 * 120.00441 * 2 1 3 5 5 H 1.07998 * 120.00515 * 120.00042 * 4 2 1 6 6 C 1.37878 * 119.99703 * 299.99447 * 4 2 1 7 7 N 1.31508 * 120.00105 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99847 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47112 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46662 * 120.00547 * 8 6 4 11 11 H 1.48499 * 109.47461 * 240.00377 * 8 6 4 12 12 N 1.46907 * 109.47111 * 240.00042 * 2 1 3 13 13 C 1.46904 * 110.99607 * 152.97624 * 12 2 1 14 14 H 1.08997 * 109.40268 * 31.45398 * 13 12 2 15 15 C 1.53068 * 109.39772 * 151.19808 * 13 12 2 16 16 C 1.53368 * 108.41376 * 169.03197 * 15 13 12 17 17 C 1.52923 * 108.66222 * 292.44870 * 16 15 13 18 18 N 1.45751 * 110.48876 * 50.75909 * 17 16 15 19 19 C 1.46496 * 117.94728 * 160.92486 * 18 17 16 20 20 C 1.52998 * 109.47419 * 270.02470 * 19 18 17 21 21 C 1.52997 * 109.47413 * 59.99422 * 20 19 18 22 22 C 1.52996 * 109.47494 * 180.02562 * 20 19 18 23 23 C 1.53004 * 109.46580 * 299.99801 * 20 19 18 24 24 C 1.33349 * 124.10945 * 340.94923 * 18 17 16 25 25 O 1.21278 * 118.24934 * 182.20225 * 24 18 17 26 26 H 1.09004 * 109.46799 * 178.78138 * 1 2 3 27 27 H 1.08991 * 109.46999 * 298.78119 * 1 2 3 28 28 H 1.08995 * 109.46462 * 58.78243 * 1 2 3 29 29 H 0.97001 * 119.99912 * 179.97438 * 7 6 4 30 30 H 1.00902 * 110.99869 * 276.92705 * 12 2 1 31 31 H 1.08993 * 109.67253 * 288.75832 * 15 13 12 32 32 H 1.09003 * 109.67311 * 49.29313 * 15 13 12 33 33 H 1.08996 * 109.60353 * 172.69870 * 16 15 13 34 34 H 1.09004 * 109.61512 * 52.20457 * 16 15 13 35 35 H 1.09003 * 109.29819 * 290.44598 * 17 16 15 36 36 H 1.08999 * 109.13015 * 170.96436 * 17 16 15 37 37 H 1.09008 * 109.47019 * 30.01807 * 19 18 17 38 38 H 1.08998 * 109.47172 * 150.01600 * 19 18 17 39 39 H 1.09003 * 109.46778 * 60.00283 * 21 20 19 40 40 H 1.08998 * 109.47446 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47120 * 300.00270 * 21 20 19 42 42 H 1.08999 * 109.47257 * 59.99602 * 22 20 19 43 43 H 1.08999 * 109.47639 * 179.97438 * 22 20 19 44 44 H 1.09003 * 109.46774 * 299.99764 * 22 20 19 45 45 H 1.08997 * 109.47482 * 60.00019 * 23 20 19 46 46 H 1.09007 * 109.47085 * 180.02562 * 23 20 19 47 47 H 1.08999 * 109.47257 * 299.99838 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.1462 -2.2872 3.6037 10 1 3.1465 -0.1875 4.8165 11 1 1.1660 -1.5869 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 3.3470 -0.1973 -1.5882 14 1 3.8950 0.1077 -0.6967 15 6 4.1174 -1.3124 -2.2996 16 6 5.3739 -0.7042 -2.9347 17 6 4.9464 0.2310 -4.0666 18 7 3.9304 1.1659 -3.5996 19 6 3.7082 2.3851 -4.3809 20 6 4.6253 3.4958 -3.8650 21 6 6.0847 3.0587 -4.0056 22 6 4.3928 4.7692 -4.6805 23 6 4.3148 3.7703 -2.3921 24 6 3.1907 0.9814 -2.5055 25 8 2.3463 1.8095 -2.2371 26 1 -0.3633 -1.0275 -0.0219 27 1 -0.3633 0.4947 0.9006 28 1 -0.3632 0.5326 -0.8789 29 1 0.7083 1.1608 3.4844 30 1 2.0331 -1.6918 -1.0600 31 1 4.4043 -2.0778 -1.5787 32 1 3.4912 -1.7541 -3.0749 33 1 6.0028 -1.4993 -3.3351 34 1 5.9272 -0.1403 -2.1836 35 1 4.5420 -0.3596 -4.8886 36 1 5.8152 0.7884 -4.4167 37 1 3.9295 2.1895 -5.4303 38 1 2.6685 2.6964 -4.2807 39 1 6.3059 2.8631 -5.0549 40 1 6.7380 3.8498 -3.6376 41 1 6.2500 2.1517 -3.4243 42 1 3.3530 5.0804 -4.5799 43 1 5.0458 5.5606 -4.3127 44 1 4.6136 4.5739 -5.7299 45 1 4.4801 2.8632 -1.8107 46 1 4.9678 4.5619 -2.0246 47 1 3.2751 4.0816 -2.2919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -45.050195 kcal Electronic energy + Delta-G solvation = -24361.981336 eV Core-core repulsion = 21158.193698 eV Total energy + Delta-G solvation = -3203.787638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47749 -37.28965 -36.04552 -35.28206 -32.97657 -31.46364 -29.36035 -27.49701 -27.12375 -26.40679 -26.33676 -24.97206 -22.83742 -22.09943 -19.89934 -19.00386 -18.13049 -16.67824 -16.19955 -15.91469 -15.73448 -14.82120 -14.49537 -14.27554 -14.02484 -13.91110 -13.25457 -13.21873 -13.10844 -12.99630 -12.35880 -12.20644 -12.11398 -11.72406 -11.60819 -11.51818 -11.28386 -11.22332 -11.03499 -10.96103 -10.85880 -10.80285 -10.60109 -10.56895 -10.53585 -10.20075 -9.98047 -9.67444 -8.97046 -8.95887 -8.30104 -8.26680 -7.26627 -5.92931 -4.06039 3.28498 3.31887 3.35972 3.36800 3.38974 4.43263 4.78519 4.80910 4.83769 4.90007 4.97304 5.01576 5.20665 5.32344 5.43460 5.47333 5.49854 5.56003 5.59584 5.71758 5.77365 5.81381 5.84324 5.95441 5.98267 6.03272 6.04972 6.11235 6.12907 6.24171 6.30940 6.43165 6.48090 6.68964 6.83068 7.08162 7.34483 7.42550 7.62655 7.80370 7.92113 8.14786 8.25566 8.38787 8.72237 8.87482 9.08000 9.61157 11.08150 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.005027 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.417842 B = 5568.920798 C = 5947.454762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.212 3.788 3 H 0.046 0.954 4 C -0.547 4.547 5 H 0.052 0.948 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.673 5.673 13 C 0.083 3.917 14 H 0.078 0.922 15 C -0.126 4.126 16 C -0.133 4.133 17 C 0.111 3.889 18 N -0.610 5.610 19 C 0.120 3.880 20 C -0.084 4.084 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.132 4.132 24 C 0.526 3.474 25 O -0.521 6.521 26 H 0.019 0.981 27 H 0.080 0.920 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.333 0.667 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.209 1.235 -15.288 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.063 0.937 4 C -0.587 4.587 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.304 5.304 13 C -0.031 4.031 14 H 0.096 0.904 15 C -0.164 4.164 16 C -0.171 4.171 17 C -0.012 4.012 18 N -0.345 5.345 19 C -0.003 4.003 20 C -0.085 4.085 21 C -0.200 4.200 22 C -0.195 4.195 23 C -0.189 4.189 24 C 0.313 3.687 25 O -0.394 6.394 26 H 0.038 0.962 27 H 0.098 0.902 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.296 2.186 -15.396 18.650 hybrid contribution 0.994 -0.936 1.646 2.138 sum 11.290 1.250 -13.750 17.835 Atomic orbital electron populations 1.21617 0.97883 0.98294 1.00106 1.19232 0.92467 0.94621 0.83254 0.93650 1.21921 1.31940 1.12683 0.92121 0.92954 1.24931 0.94915 0.94843 0.98850 1.69923 1.36222 1.22663 1.23197 0.86626 0.78670 0.79666 0.83503 1.19967 1.21099 1.20969 1.60673 1.20274 1.08794 1.40702 1.21197 0.93009 0.92512 0.96336 0.90420 1.21896 0.95987 0.98096 1.00434 1.21849 0.98233 0.98970 0.98060 1.21480 0.91404 0.91509 0.96832 1.47352 1.38726 1.21649 1.26792 1.21468 1.00772 0.84322 0.93753 1.20944 0.95429 0.95229 0.96915 1.22015 0.95532 1.01526 1.00974 1.21797 1.01935 0.96688 0.99115 1.21831 1.01918 1.01057 0.94083 1.20371 0.80007 0.87826 0.80449 1.90678 1.33224 1.44212 1.71330 0.96177 0.90184 0.96687 0.93001 0.84892 0.90949 0.90850 0.90208 0.91117 0.92469 0.90642 0.91464 0.89573 0.93059 0.93008 0.92009 0.92409 0.92666 0.92945 0.92774 0.93849 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.31 37.16 0.35 -2.86 16 2 C 0.21 5.59 2.08 -68.86 -0.14 5.45 16 3 H 0.05 1.37 6.84 -51.93 -0.36 1.01 16 4 C -0.55 -15.08 8.38 -34.44 -0.29 -15.37 16 5 H 0.05 1.40 7.71 -52.49 -0.40 1.00 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 7 N -0.88 -25.97 11.31 55.43 0.63 -25.34 16 8 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.67 -14.81 5.93 -102.39 -0.61 -15.41 16 13 C 0.08 1.57 2.56 -69.08 -0.18 1.40 16 14 H 0.08 1.66 7.67 -51.93 -0.40 1.26 16 15 C -0.13 -1.74 5.25 -26.51 -0.14 -1.88 16 16 C -0.13 -1.42 6.02 -26.58 -0.16 -1.58 16 17 C 0.11 1.18 5.53 -4.49 -0.02 1.15 16 18 N -0.61 -8.70 2.39 -174.96 -0.42 -9.12 16 19 C 0.12 1.56 4.52 -4.04 -0.02 1.54 16 20 C -0.08 -1.01 0.84 -154.51 -0.13 -1.14 16 21 C -0.14 -1.45 7.17 37.16 0.27 -1.18 16 22 C -0.14 -1.40 8.47 37.16 0.31 -1.08 16 23 C -0.13 -2.00 7.11 37.16 0.26 -1.74 16 24 C 0.53 9.90 5.51 -11.87 -0.07 9.84 16 25 O -0.52 -11.93 12.69 5.56 0.07 -11.86 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 2.30 6.04 -51.93 -0.31 1.98 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.33 6.93 7.94 -39.29 -0.31 6.62 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.66 5.40 -51.93 -0.28 0.38 16 37 H 0.07 0.70 8.02 -51.92 -0.42 0.29 16 38 H 0.09 1.34 7.13 -51.93 -0.37 0.97 16 39 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.66 5.81 -51.93 -0.30 0.36 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.95 6.17 -51.93 -0.32 0.63 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.13 7.59 -51.93 -0.39 0.74 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -31.46 351.59 -8.59 -40.05 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.49 Total: 5.67 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -0.05 Total: -5.66 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.40 Total: -49.88 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.46 -8.59 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.995 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds