Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47172 * 2 1 4 4 C 1.50701 * 109.46991 * 120.00441 * 2 1 3 5 5 H 1.07998 * 120.00515 * 120.00042 * 4 2 1 6 6 C 1.37878 * 119.99703 * 299.99447 * 4 2 1 7 7 N 1.31508 * 120.00105 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99847 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47112 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46662 * 120.00547 * 8 6 4 11 11 H 1.48499 * 109.47461 * 240.00377 * 8 6 4 12 12 N 1.46907 * 109.47111 * 240.00042 * 2 1 3 13 13 C 1.46904 * 110.99607 * 152.97624 * 12 2 1 14 14 H 1.08997 * 109.40268 * 31.45398 * 13 12 2 15 15 C 1.53068 * 109.39772 * 151.19808 * 13 12 2 16 16 C 1.53368 * 108.41376 * 169.03197 * 15 13 12 17 17 C 1.52923 * 108.66222 * 292.44870 * 16 15 13 18 18 N 1.45751 * 110.48876 * 50.75909 * 17 16 15 19 19 C 1.46496 * 117.94728 * 160.92486 * 18 17 16 20 20 C 1.52998 * 109.47419 * 270.02470 * 19 18 17 21 21 C 1.52997 * 109.47413 * 59.99422 * 20 19 18 22 22 C 1.52996 * 109.47494 * 180.02562 * 20 19 18 23 23 C 1.53004 * 109.46580 * 299.99801 * 20 19 18 24 24 C 1.33349 * 124.10945 * 340.94923 * 18 17 16 25 25 O 1.21278 * 118.24934 * 182.20225 * 24 18 17 26 26 H 1.09004 * 109.46799 * 178.78138 * 1 2 3 27 27 H 1.08991 * 109.46999 * 298.78119 * 1 2 3 28 28 H 1.08995 * 109.46462 * 58.78243 * 1 2 3 29 29 H 0.97001 * 119.99912 * 179.97438 * 7 6 4 30 30 H 1.00902 * 110.99869 * 276.92705 * 12 2 1 31 31 H 1.08993 * 109.67253 * 288.75832 * 15 13 12 32 32 H 1.09003 * 109.67311 * 49.29313 * 15 13 12 33 33 H 1.08996 * 109.60353 * 172.69870 * 16 15 13 34 34 H 1.09004 * 109.61512 * 52.20457 * 16 15 13 35 35 H 1.09003 * 109.29819 * 290.44598 * 17 16 15 36 36 H 1.08999 * 109.13015 * 170.96436 * 17 16 15 37 37 H 1.09008 * 109.47019 * 30.01807 * 19 18 17 38 38 H 1.08998 * 109.47172 * 150.01600 * 19 18 17 39 39 H 1.09003 * 109.46778 * 60.00283 * 21 20 19 40 40 H 1.08998 * 109.47446 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47120 * 300.00270 * 21 20 19 42 42 H 1.08999 * 109.47257 * 59.99602 * 22 20 19 43 43 H 1.08999 * 109.47639 * 179.97438 * 22 20 19 44 44 H 1.09003 * 109.46774 * 299.99764 * 22 20 19 45 45 H 1.08997 * 109.47482 * 60.00019 * 23 20 19 46 46 H 1.09007 * 109.47085 * 180.02562 * 23 20 19 47 47 H 1.08999 * 109.47257 * 299.99838 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.1462 -2.2872 3.6037 10 1 3.1465 -0.1875 4.8165 11 1 1.1660 -1.5869 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 3.3470 -0.1973 -1.5882 14 1 3.8950 0.1077 -0.6967 15 6 4.1174 -1.3124 -2.2996 16 6 5.3739 -0.7042 -2.9347 17 6 4.9464 0.2310 -4.0666 18 7 3.9304 1.1659 -3.5996 19 6 3.7082 2.3851 -4.3809 20 6 4.6253 3.4958 -3.8650 21 6 6.0847 3.0587 -4.0056 22 6 4.3928 4.7692 -4.6805 23 6 4.3148 3.7703 -2.3921 24 6 3.1907 0.9814 -2.5055 25 8 2.3463 1.8095 -2.2371 26 1 -0.3633 -1.0275 -0.0219 27 1 -0.3633 0.4947 0.9006 28 1 -0.3632 0.5326 -0.8789 29 1 0.7083 1.1608 3.4844 30 1 2.0331 -1.6918 -1.0600 31 1 4.4043 -2.0778 -1.5787 32 1 3.4912 -1.7541 -3.0749 33 1 6.0028 -1.4993 -3.3351 34 1 5.9272 -0.1403 -2.1836 35 1 4.5420 -0.3596 -4.8886 36 1 5.8152 0.7884 -4.4167 37 1 3.9295 2.1895 -5.4303 38 1 2.6685 2.6964 -4.2807 39 1 6.3059 2.8631 -5.0549 40 1 6.7380 3.8498 -3.6376 41 1 6.2500 2.1517 -3.4243 42 1 3.3530 5.0804 -4.5799 43 1 5.0458 5.5606 -4.3127 44 1 4.6136 4.5739 -5.7299 45 1 4.4801 2.8632 -1.8107 46 1 4.9678 4.5619 -2.0246 47 1 3.2751 4.0816 -2.2919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585115968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = -65.839254 kcal Electronic energy + Delta-G solvation = -24362.882817 eV Core-core repulsion = 21158.193698 eV Total energy + Delta-G solvation = -3204.689119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76081 -38.58060 -37.48652 -36.81599 -34.70025 -33.05548 -30.97603 -28.62877 -28.21125 -27.74113 -27.45103 -27.18128 -24.15528 -23.30370 -21.92674 -20.05158 -19.31380 -18.66460 -17.40532 -17.34295 -17.10488 -16.71675 -15.97356 -15.43497 -15.26478 -15.18045 -14.80848 -14.45590 -14.31659 -14.17096 -14.06802 -13.46094 -13.36721 -13.18439 -12.99798 -12.89753 -12.78735 -12.68364 -12.52853 -12.33454 -12.26765 -12.15039 -12.14612 -11.97378 -11.73257 -11.60188 -11.54647 -11.37190 -11.12567 -10.60762 -10.36772 -9.44205 -9.12841 -8.07604 -6.31148 1.37479 1.38266 1.50015 1.86790 2.16965 2.38916 3.13699 3.57863 3.75631 3.85351 3.90140 3.92287 3.99984 4.03997 4.24454 4.45090 4.50979 4.61454 4.64971 4.69465 4.76157 4.79918 4.87206 4.88481 4.92094 4.94520 5.04875 5.06746 5.08407 5.08983 5.14298 5.18828 5.26143 5.32064 5.34917 5.44302 5.47469 5.53303 5.64062 5.75427 6.03524 6.11362 6.29188 6.60242 6.82118 7.00204 7.41160 7.48046 8.91976 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.005027 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.417842 B = 5568.920798 C = 5947.454762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.223 3.777 3 H -0.004 1.004 4 C -0.557 4.557 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.673 5.673 13 C 0.080 3.920 14 H 0.043 0.957 15 C -0.117 4.117 16 C -0.126 4.126 17 C 0.102 3.898 18 N -0.599 5.599 19 C 0.117 3.883 20 C -0.080 4.080 21 C -0.139 4.139 22 C -0.133 4.133 23 C -0.125 4.125 24 C 0.521 3.479 25 O -0.577 6.577 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.010 0.990 29 H 0.261 0.739 30 H 0.340 0.660 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.022 0.978 46 H 0.053 0.947 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.136 -0.504 -17.473 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 H 0.014 0.986 4 C -0.596 4.596 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.304 5.304 13 C -0.034 4.034 14 H 0.061 0.939 15 C -0.155 4.155 16 C -0.164 4.164 17 C -0.020 4.020 18 N -0.332 5.332 19 C -0.006 4.006 20 C -0.081 4.081 21 C -0.195 4.195 22 C -0.191 4.191 23 C -0.183 4.183 24 C 0.308 3.692 25 O -0.456 6.456 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 13.272 0.418 -17.635 22.076 hybrid contribution 0.094 -0.342 2.274 2.301 sum 13.366 0.076 -15.362 20.363 Atomic orbital electron populations 1.21466 0.98338 0.98389 0.98613 1.18857 0.92096 0.92483 0.85078 0.98550 1.22184 1.31905 1.12829 0.92698 0.92208 1.25830 0.95039 0.95537 1.02286 1.70086 1.37428 1.24224 1.23976 0.85479 0.78185 0.78648 0.79132 1.18542 1.20954 1.20470 1.60489 1.22728 1.08870 1.38330 1.21262 0.91522 0.94740 0.95885 0.93924 1.21869 0.96929 0.96252 1.00447 1.21883 0.96833 0.99944 0.97789 1.21882 0.91398 0.91403 0.97271 1.47360 1.38170 1.22579 1.25067 1.21620 0.99276 0.84119 0.95543 1.20928 0.96888 0.95961 0.94305 1.21979 0.93376 1.01350 1.02844 1.21765 1.01277 0.95724 1.00338 1.21757 0.99879 0.99716 0.96914 1.20352 0.80133 0.87098 0.81585 1.90661 1.36059 1.45846 1.73010 0.95081 0.92645 0.97086 0.92958 0.84100 0.90331 0.89880 0.86054 0.92001 0.90048 0.87600 0.87431 0.93046 0.90015 0.92519 0.92650 0.93901 0.91921 0.90219 0.95836 0.92770 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.12 9.31 71.98 0.67 -5.45 16 2 C 0.22 12.47 2.08 44.17 0.09 12.56 16 3 H 0.00 -0.23 6.84 -2.39 -0.02 -0.25 16 4 C -0.56 -31.56 8.38 25.60 0.21 -31.34 16 5 H 0.06 3.22 7.71 -2.91 -0.02 3.20 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -56.27 11.31 21.45 0.24 -56.03 16 8 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 9 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.67 -30.69 5.93 -477.86 -2.84 -33.52 16 13 C 0.08 3.11 2.56 44.03 0.11 3.23 16 14 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 15 C -0.12 -3.03 5.25 30.74 0.16 -2.87 16 16 C -0.13 -2.28 6.02 30.69 0.18 -2.09 16 17 C 0.10 1.76 5.53 86.49 0.48 2.24 16 18 N -0.60 -16.51 2.39 -826.65 -1.97 -18.48 16 19 C 0.12 2.92 4.52 86.38 0.39 3.31 16 20 C -0.08 -1.82 0.84 -52.18 -0.04 -1.87 16 21 C -0.14 -2.33 7.17 71.98 0.52 -1.81 16 22 C -0.13 -2.47 8.47 71.98 0.61 -1.86 16 23 C -0.13 -4.05 7.11 71.98 0.51 -3.54 16 24 C 0.52 20.45 5.51 87.72 0.48 20.93 16 25 O -0.58 -28.71 12.69 -3.02 -0.04 -28.75 16 26 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.05 3.35 6.04 -2.39 -0.01 3.34 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.34 14.30 7.94 -89.69 -0.71 13.59 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.02 8.13 -2.39 -0.02 2.00 16 33 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.26 8.12 -2.38 -0.02 1.24 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.29 5.40 -2.39 -0.01 1.27 16 37 H 0.11 1.83 8.02 -2.38 -0.02 1.81 16 38 H 0.05 1.66 7.13 -2.39 -0.02 1.64 16 39 H 0.08 0.92 8.07 -2.39 -0.02 0.91 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 1.01 5.81 -2.39 -0.01 0.99 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.02 0.87 6.17 -2.39 -0.01 0.86 16 46 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.03 1.11 7.59 -2.39 -0.02 1.09 16 Total: -1.00 -75.26 351.59 2.47 -72.79 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.22 Total: 24.87 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.83 Total: -7.40 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -4.57 Total: -108.04 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.04 Total: -28.75 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -75.26 2.47 -72.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.952 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds