Wall clock time and date at job start Wed Apr 15 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47245 * 2 1 4 4 C 1.50705 * 109.47445 * 239.99503 * 2 1 3 5 5 H 1.07994 * 120.00463 * 244.37059 * 4 2 1 6 6 C 1.37878 * 119.99274 * 64.36949 * 4 2 1 7 7 N 1.31518 * 119.99588 * 196.06493 * 6 4 2 8 8 Si 1.86792 * 120.00509 * 16.06852 * 6 4 2 9 9 H 1.48503 * 109.47322 * 92.76195 * 8 6 4 10 10 H 1.48502 * 109.47329 * 212.76266 * 8 6 4 11 11 H 1.48503 * 109.47110 * 332.76557 * 8 6 4 12 12 N 1.46899 * 109.46835 * 119.99848 * 2 1 3 13 13 C 1.46898 * 111.00251 * 273.50715 * 12 2 1 14 14 H 1.08994 * 109.39942 * 33.79943 * 13 12 2 15 15 C 1.53076 * 109.39862 * 273.97889 * 13 12 2 16 16 C 1.53342 * 108.42355 * 190.96828 * 15 13 12 17 17 C 1.52926 * 108.67509 * 67.53286 * 16 15 13 18 18 N 1.45746 * 110.48422 * 309.24343 * 17 16 15 19 19 C 1.46500 * 117.94710 * 199.07466 * 18 17 16 20 20 C 1.52999 * 109.47232 * 90.00295 * 19 18 17 21 21 C 1.53002 * 109.47060 * 60.00329 * 20 19 18 22 22 C 1.52996 * 109.47394 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47010 * 300.00159 * 20 19 18 24 24 C 1.33354 * 124.10858 * 19.07782 * 18 17 16 25 25 O 1.21287 * 118.24883 * 177.77172 * 24 18 17 26 26 H 1.08994 * 109.47321 * 306.54595 * 1 2 3 27 27 H 1.09001 * 109.47152 * 66.54559 * 1 2 3 28 28 H 1.08999 * 109.47104 * 186.54000 * 1 2 3 29 29 H 0.97002 * 120.00123 * 179.97438 * 7 6 4 30 30 H 1.00899 * 111.00425 * 37.46075 * 12 2 1 31 31 H 1.09002 * 109.67383 * 310.70115 * 15 13 12 32 32 H 1.09003 * 109.67521 * 71.23367 * 15 13 12 33 33 H 1.09003 * 109.60616 * 187.28678 * 16 15 13 34 34 H 1.08994 * 109.60684 * 307.61062 * 16 15 13 35 35 H 1.08995 * 109.29966 * 69.55990 * 17 16 15 36 36 H 1.09003 * 109.30066 * 188.93504 * 17 16 15 37 37 H 1.09001 * 109.47402 * 210.00102 * 19 18 17 38 38 H 1.09005 * 109.46971 * 330.00106 * 19 18 17 39 39 H 1.08988 * 109.47260 * 59.99916 * 21 20 19 40 40 H 1.08997 * 109.46850 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.46914 * 299.99837 * 21 20 19 42 42 H 1.09005 * 109.46925 * 59.99740 * 22 20 19 43 43 H 1.08998 * 109.47657 * 179.97438 * 22 20 19 44 44 H 1.09000 * 109.47246 * 300.00621 * 22 20 19 45 45 H 1.08999 * 109.47276 * 59.99972 * 23 20 19 46 46 H 1.08999 * 109.47098 * 179.97438 * 23 20 19 47 47 H 1.09004 * 109.47292 * 299.99624 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5938 -1.6279 -1.1329 6 6 1.7752 -0.1892 -2.4807 7 7 1.9238 -0.9408 -3.5497 8 14 1.2158 1.5843 -2.6563 9 1 2.3976 2.4570 -2.8730 10 1 0.2953 1.7006 -3.8158 11 1 0.5097 2.0054 -1.4196 12 7 2.0196 -0.6925 1.1995 13 6 2.1159 0.2308 2.3380 14 1 1.3180 0.9705 2.2728 15 6 3.4715 0.9410 2.3033 16 6 3.6644 1.6824 3.6316 17 6 3.8150 0.6510 4.7506 18 7 2.7323 -0.3232 4.6955 19 6 2.4579 -1.1135 5.8981 20 6 1.4331 -0.3814 6.7667 21 6 0.1375 -0.1905 5.9755 22 6 1.1470 -1.2065 8.0230 23 6 1.9902 0.9850 7.1706 24 6 1.9758 -0.5403 3.6190 25 8 1.1293 -1.4069 3.6775 26 1 -0.3634 0.6119 0.8255 27 1 -0.3633 0.4090 -0.9428 28 1 -0.3633 -1.0210 0.1170 29 1 1.7425 -0.5742 -4.4293 30 1 1.4351 -1.4837 1.4241 31 1 4.2670 0.2072 2.1737 32 1 3.4914 1.6539 1.4789 33 1 4.5617 2.2990 3.5795 34 1 2.7978 2.3138 3.8272 35 1 4.7691 0.1360 4.6398 36 1 3.7933 1.1595 5.7146 37 1 2.0610 -2.0871 5.6104 38 1 3.3809 -1.2497 6.4618 39 1 -0.2593 -1.1639 5.6878 40 1 -0.5924 0.3315 6.5942 41 1 0.3416 0.3976 5.0807 42 1 2.0701 -1.3423 8.5865 43 1 0.4172 -0.6848 8.6420 44 1 0.7503 -2.1803 7.7356 45 1 2.1943 1.5731 6.2758 46 1 1.2599 1.5068 7.7890 47 1 2.9131 0.8490 7.7344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:03 Heat of formation + Delta-G solvation = -40.155487 kcal Electronic energy + Delta-G solvation = -24133.861169 eV Core-core repulsion = 20930.285782 eV Total energy + Delta-G solvation = -3203.575388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81636 -37.59487 -36.39337 -35.59074 -32.99191 -31.75176 -29.80118 -27.80929 -27.38526 -26.75990 -26.60170 -25.06368 -23.09170 -22.19743 -19.97967 -19.20597 -18.40759 -17.12565 -16.43690 -16.26531 -15.90914 -15.00212 -14.58069 -14.38151 -14.21448 -14.03020 -13.60750 -13.40328 -13.27264 -13.05867 -12.53478 -12.45006 -12.41589 -12.24363 -12.02556 -11.76565 -11.70663 -11.49831 -11.29178 -11.14040 -10.97745 -10.95545 -10.83455 -10.76427 -10.67630 -10.45140 -10.17031 -9.56642 -9.30315 -9.21842 -8.57385 -8.34325 -7.47255 -6.04151 -3.95842 2.86678 3.07073 3.29036 3.38383 3.39868 4.45319 4.57372 4.62163 4.70557 4.76880 4.79223 4.82832 5.08718 5.20042 5.25492 5.27257 5.36226 5.40639 5.44220 5.55139 5.60310 5.62533 5.70799 5.78187 5.81492 5.83365 5.89192 5.90815 5.92181 6.06086 6.20358 6.24267 6.32686 6.38327 6.43767 6.52356 6.57563 6.66469 6.85348 7.24654 7.55186 7.75031 7.91915 8.36198 8.38641 8.71753 9.11710 9.62045 11.09379 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029363 B = 0.004376 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.345054 B = 6397.510156 C = 6672.796527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.188 3.812 3 H 0.029 0.971 4 C -0.501 4.501 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.862 3.138 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.258 1.258 12 N -0.657 5.657 13 C 0.074 3.926 14 H 0.065 0.935 15 C -0.112 4.112 16 C -0.137 4.137 17 C 0.108 3.892 18 N -0.600 5.600 19 C 0.117 3.883 20 C -0.084 4.084 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.145 4.145 24 C 0.523 3.477 25 O -0.545 6.545 26 H 0.018 0.982 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.262 0.738 30 H 0.346 0.654 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 5.958 22.755 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.079 3.921 3 H 0.047 0.953 4 C -0.539 4.539 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.689 3.311 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.183 1.183 12 N -0.291 5.291 13 C -0.039 4.039 14 H 0.082 0.918 15 C -0.150 4.150 16 C -0.175 4.175 17 C -0.015 4.015 18 N -0.333 5.333 19 C -0.006 4.006 20 C -0.085 4.085 21 C -0.189 4.189 22 C -0.196 4.196 23 C -0.202 4.202 24 C 0.312 3.688 25 O -0.422 6.422 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.167 0.833 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.570 5.555 22.373 23.195 hybrid contribution -1.220 1.238 -0.077 1.740 sum 1.350 6.793 22.295 23.346 Atomic orbital electron populations 1.22819 1.00847 1.00209 0.99393 1.19610 0.89163 0.94427 0.88879 0.95312 1.20866 1.34793 1.10507 0.87713 0.90201 1.24871 0.95042 0.97164 0.95825 1.69980 1.49540 1.35239 0.98400 0.87223 0.78810 0.86998 0.78069 1.20661 1.21418 1.18290 1.60829 1.57913 1.08873 1.01462 1.21426 0.98225 0.95082 0.89171 0.91757 1.21705 0.97333 0.99667 0.96307 1.21906 1.02951 0.97601 0.95030 1.21583 0.89717 0.90277 0.99904 1.47218 1.34134 1.39519 1.12383 1.21561 0.98065 0.95739 0.85223 1.20939 0.96352 0.95763 0.95458 1.21832 0.95590 1.02411 0.99075 1.21798 1.01350 0.99942 0.96484 1.22033 1.00460 0.96505 1.01225 1.20314 0.80258 0.83497 0.84772 1.90667 1.34865 1.33284 1.83364 0.96269 0.92876 0.93147 0.92782 0.83331 0.90125 0.90631 0.89840 0.91466 0.91840 0.90391 0.89395 0.90954 0.91748 0.93665 0.93079 0.92742 0.92564 0.92379 0.91999 0.92894 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.44 37.16 0.31 -3.62 16 2 C 0.19 4.48 1.92 -68.86 -0.13 4.35 16 3 H 0.03 0.69 5.95 -51.93 -0.31 0.38 16 4 C -0.50 -14.22 9.27 -34.44 -0.32 -14.54 16 5 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 6 C 0.07 2.10 5.31 -17.82 -0.09 2.00 16 7 N -0.89 -27.42 13.96 55.43 0.77 -26.65 16 8 Si 0.86 21.17 25.77 -169.99 -4.38 16.79 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.26 -5.98 5.55 56.52 0.31 -5.67 16 12 N -0.66 -14.06 6.04 -102.40 -0.62 -14.68 16 13 C 0.07 1.29 2.52 -69.08 -0.17 1.12 16 14 H 0.06 1.15 7.28 -51.93 -0.38 0.77 16 15 C -0.11 -1.63 5.47 -26.52 -0.14 -1.78 16 16 C -0.14 -1.40 6.02 -26.59 -0.16 -1.56 16 17 C 0.11 1.04 5.52 -4.49 -0.02 1.02 16 18 N -0.60 -7.49 2.39 -174.96 -0.42 -7.90 16 19 C 0.12 1.29 4.52 -4.04 -0.02 1.27 16 20 C -0.08 -0.83 0.84 -154.51 -0.13 -0.96 16 21 C -0.13 -1.61 7.11 37.16 0.26 -1.35 16 22 C -0.14 -1.14 8.47 37.16 0.31 -0.82 16 23 C -0.15 -1.21 7.16 37.16 0.27 -0.95 16 24 C 0.52 8.51 5.49 -11.87 -0.07 8.44 16 25 O -0.54 -10.34 13.13 5.55 0.07 -10.27 16 26 H 0.02 0.38 7.63 -51.93 -0.40 -0.02 16 27 H 0.05 1.24 5.04 -51.93 -0.26 0.98 16 28 H 0.05 1.14 8.00 -51.93 -0.42 0.72 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.35 7.73 7.12 -39.29 -0.28 7.45 16 31 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.59 5.41 -51.93 -0.28 0.31 16 37 H 0.09 1.16 7.13 -51.93 -0.37 0.79 16 38 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 39 H 0.06 0.90 7.59 -51.94 -0.39 0.50 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.72 6.17 -51.93 -0.32 0.40 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.55 5.81 -51.93 -0.30 0.25 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.38 8.07 -51.93 -0.42 -0.04 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -31.38 345.67 -7.86 -39.24 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.39 Total: 5.63 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.10 Total: -7.37 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.26 Total: -49.23 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.38 Total: 16.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.38 -7.86 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.919 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds