Wall clock time and date at job start Wed Apr 15 2020 11:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47245 * 2 1 4 4 C 1.50705 * 109.47445 * 239.99503 * 2 1 3 5 5 H 1.07994 * 120.00463 * 244.37059 * 4 2 1 6 6 C 1.37878 * 119.99274 * 64.36949 * 4 2 1 7 7 N 1.31518 * 119.99588 * 196.06493 * 6 4 2 8 8 Si 1.86792 * 120.00509 * 16.06852 * 6 4 2 9 9 H 1.48503 * 109.47322 * 92.76195 * 8 6 4 10 10 H 1.48502 * 109.47329 * 212.76266 * 8 6 4 11 11 H 1.48503 * 109.47110 * 332.76557 * 8 6 4 12 12 N 1.46899 * 109.46835 * 119.99848 * 2 1 3 13 13 C 1.46898 * 111.00251 * 273.50715 * 12 2 1 14 14 H 1.08994 * 109.39942 * 33.79943 * 13 12 2 15 15 C 1.53076 * 109.39862 * 273.97889 * 13 12 2 16 16 C 1.53342 * 108.42355 * 190.96828 * 15 13 12 17 17 C 1.52926 * 108.67509 * 67.53286 * 16 15 13 18 18 N 1.45746 * 110.48422 * 309.24343 * 17 16 15 19 19 C 1.46500 * 117.94710 * 199.07466 * 18 17 16 20 20 C 1.52999 * 109.47232 * 90.00295 * 19 18 17 21 21 C 1.53002 * 109.47060 * 60.00329 * 20 19 18 22 22 C 1.52996 * 109.47394 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47010 * 300.00159 * 20 19 18 24 24 C 1.33354 * 124.10858 * 19.07782 * 18 17 16 25 25 O 1.21287 * 118.24883 * 177.77172 * 24 18 17 26 26 H 1.08994 * 109.47321 * 306.54595 * 1 2 3 27 27 H 1.09001 * 109.47152 * 66.54559 * 1 2 3 28 28 H 1.08999 * 109.47104 * 186.54000 * 1 2 3 29 29 H 0.97002 * 120.00123 * 179.97438 * 7 6 4 30 30 H 1.00899 * 111.00425 * 37.46075 * 12 2 1 31 31 H 1.09002 * 109.67383 * 310.70115 * 15 13 12 32 32 H 1.09003 * 109.67521 * 71.23367 * 15 13 12 33 33 H 1.09003 * 109.60616 * 187.28678 * 16 15 13 34 34 H 1.08994 * 109.60684 * 307.61062 * 16 15 13 35 35 H 1.08995 * 109.29966 * 69.55990 * 17 16 15 36 36 H 1.09003 * 109.30066 * 188.93504 * 17 16 15 37 37 H 1.09001 * 109.47402 * 210.00102 * 19 18 17 38 38 H 1.09005 * 109.46971 * 330.00106 * 19 18 17 39 39 H 1.08988 * 109.47260 * 59.99916 * 21 20 19 40 40 H 1.08997 * 109.46850 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.46914 * 299.99837 * 21 20 19 42 42 H 1.09005 * 109.46925 * 59.99740 * 22 20 19 43 43 H 1.08998 * 109.47657 * 179.97438 * 22 20 19 44 44 H 1.09000 * 109.47246 * 300.00621 * 22 20 19 45 45 H 1.08999 * 109.47276 * 59.99972 * 23 20 19 46 46 H 1.08999 * 109.47098 * 179.97438 * 23 20 19 47 47 H 1.09004 * 109.47292 * 299.99624 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5938 -1.6279 -1.1329 6 6 1.7752 -0.1892 -2.4807 7 7 1.9238 -0.9408 -3.5497 8 14 1.2158 1.5843 -2.6563 9 1 2.3976 2.4570 -2.8730 10 1 0.2953 1.7006 -3.8158 11 1 0.5097 2.0054 -1.4196 12 7 2.0196 -0.6925 1.1995 13 6 2.1159 0.2308 2.3380 14 1 1.3180 0.9705 2.2728 15 6 3.4715 0.9410 2.3033 16 6 3.6644 1.6824 3.6316 17 6 3.8150 0.6510 4.7506 18 7 2.7323 -0.3232 4.6955 19 6 2.4579 -1.1135 5.8981 20 6 1.4331 -0.3814 6.7667 21 6 0.1375 -0.1905 5.9755 22 6 1.1470 -1.2065 8.0230 23 6 1.9902 0.9850 7.1706 24 6 1.9758 -0.5403 3.6190 25 8 1.1293 -1.4069 3.6775 26 1 -0.3634 0.6119 0.8255 27 1 -0.3633 0.4090 -0.9428 28 1 -0.3633 -1.0210 0.1170 29 1 1.7425 -0.5742 -4.4293 30 1 1.4351 -1.4837 1.4241 31 1 4.2670 0.2072 2.1737 32 1 3.4914 1.6539 1.4789 33 1 4.5617 2.2990 3.5795 34 1 2.7978 2.3138 3.8272 35 1 4.7691 0.1360 4.6398 36 1 3.7933 1.1595 5.7146 37 1 2.0610 -2.0871 5.6104 38 1 3.3809 -1.2497 6.4618 39 1 -0.2593 -1.1639 5.6878 40 1 -0.5924 0.3315 6.5942 41 1 0.3416 0.3976 5.0807 42 1 2.0701 -1.3423 8.5865 43 1 0.4172 -0.6848 8.6420 44 1 0.7503 -2.1803 7.7356 45 1 2.1943 1.5731 6.2758 46 1 1.2599 1.5068 7.7890 47 1 2.9131 0.8490 7.7344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585115969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:02 Heat of formation + Delta-G solvation = -61.578196 kcal Electronic energy + Delta-G solvation = -24134.790128 eV Core-core repulsion = 20930.285782 eV Total energy + Delta-G solvation = -3204.504346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94147 -38.73029 -37.72282 -36.86400 -34.69825 -33.33592 -31.27764 -28.86051 -28.21016 -27.84496 -27.51053 -27.15548 -24.35477 -23.27066 -21.82029 -20.11655 -19.50616 -18.90806 -17.69335 -17.51728 -17.12464 -16.65399 -15.92490 -15.50125 -15.32832 -15.09334 -14.94025 -14.57223 -14.48877 -14.33707 -14.18449 -13.94822 -13.75898 -13.32872 -13.06303 -12.97461 -12.84042 -12.55587 -12.53140 -12.43296 -12.32810 -12.11233 -12.04029 -11.98669 -11.71773 -11.62121 -11.55398 -11.50142 -11.33609 -10.58330 -10.48780 -9.57358 -9.17649 -8.27940 -6.25600 1.34965 1.37561 1.47326 1.60562 2.04300 2.36554 3.04944 3.40639 3.57618 3.83045 3.85316 3.92514 3.99599 4.03177 4.15169 4.26834 4.44759 4.49041 4.58245 4.60093 4.62051 4.67812 4.72165 4.77372 4.80137 4.86371 4.92026 4.92675 4.98244 5.05960 5.07131 5.10594 5.13944 5.19569 5.31690 5.38087 5.38707 5.44592 5.51999 5.61532 5.67064 5.98606 6.44574 6.58068 6.66489 6.78266 7.19014 7.36807 8.89665 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029363 B = 0.004376 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.345054 B = 6397.510156 C = 6672.796527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.196 3.804 3 H 0.038 0.962 4 C -0.510 4.510 5 H 0.029 0.971 6 C 0.016 3.984 7 N -0.944 5.944 8 Si 0.933 3.067 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.233 1.233 12 N -0.670 5.670 13 C 0.071 3.929 14 H 0.063 0.937 15 C -0.110 4.110 16 C -0.127 4.127 17 C 0.101 3.899 18 N -0.590 5.590 19 C 0.114 3.886 20 C -0.080 4.080 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.142 4.142 24 C 0.520 3.480 25 O -0.583 6.583 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.335 0.665 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 8.987 25.766 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.086 3.914 3 H 0.056 0.944 4 C -0.549 4.549 5 H 0.048 0.952 6 C -0.182 4.182 7 N -0.584 5.584 8 Si 0.756 3.244 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.156 1.156 12 N -0.302 5.302 13 C -0.042 4.042 14 H 0.080 0.920 15 C -0.148 4.148 16 C -0.165 4.165 17 C -0.020 4.020 18 N -0.321 5.321 19 C -0.009 4.009 20 C -0.081 4.081 21 C -0.185 4.185 22 C -0.192 4.192 23 C -0.199 4.199 24 C 0.308 3.692 25 O -0.463 6.463 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.382 8.607 25.439 27.068 hybrid contribution -1.411 0.175 -0.974 1.723 sum 1.972 8.782 24.465 26.068 Atomic orbital electron populations 1.22702 0.99758 1.00197 1.00061 1.19387 0.89785 0.94142 0.88070 0.94384 1.21088 1.34343 1.09228 0.90201 0.95220 1.25767 0.95239 1.02021 0.95132 1.70130 1.51429 1.37659 0.99165 0.86082 0.78829 0.80516 0.78982 1.19603 1.21244 1.15600 1.60716 1.57475 1.09494 1.02557 1.21549 0.99865 0.94389 0.88434 0.91983 1.21691 0.94972 0.99235 0.98939 1.21897 1.04754 0.97553 0.92255 1.21904 0.88980 0.89810 1.01343 1.47269 1.33594 1.39567 1.11632 1.21722 0.99826 0.94428 0.84881 1.20916 0.94576 0.97198 0.95405 1.21776 0.97419 1.00502 0.98773 1.21771 1.02533 0.99080 0.95846 1.22006 1.01588 0.94878 1.01389 1.20108 0.80582 0.83133 0.85367 1.90655 1.36720 1.34942 1.83993 0.93676 0.93402 0.94144 0.92565 0.84530 0.91444 0.91542 0.86720 0.90845 0.90540 0.87053 0.92273 0.87766 0.94529 0.92521 0.95213 0.90741 0.91806 0.93584 0.92416 0.92332 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.56 8.44 71.98 0.61 -6.95 16 2 C 0.20 9.41 1.92 44.17 0.08 9.49 16 3 H 0.04 1.77 5.95 -2.39 -0.01 1.76 16 4 C -0.51 -30.10 9.27 25.60 0.24 -29.87 16 5 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 6 C 0.02 0.94 5.31 84.65 0.45 1.39 16 7 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 8 Si 0.93 43.62 25.77 68.60 1.77 45.39 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.23 -9.86 5.55 99.48 0.55 -9.31 16 12 N -0.67 -29.52 6.04 -477.90 -2.89 -32.41 16 13 C 0.07 2.43 2.52 44.03 0.11 2.54 16 14 H 0.06 2.16 7.28 -2.39 -0.02 2.14 16 15 C -0.11 -3.06 5.47 30.73 0.17 -2.89 16 16 C -0.13 -2.15 6.02 30.68 0.18 -1.97 16 17 C 0.10 1.56 5.52 86.50 0.48 2.03 16 18 N -0.59 -13.65 2.39 -826.64 -1.97 -15.62 16 19 C 0.11 2.30 4.52 86.38 0.39 2.69 16 20 C -0.08 -1.39 0.84 -52.18 -0.04 -1.43 16 21 C -0.13 -3.05 7.11 71.98 0.51 -2.54 16 22 C -0.13 -1.89 8.47 71.98 0.61 -1.28 16 23 C -0.14 -1.77 7.16 71.98 0.52 -1.26 16 24 C 0.52 16.90 5.49 87.71 0.48 17.38 16 25 O -0.58 -22.96 13.13 -3.05 -0.04 -23.00 16 26 H 0.04 1.77 7.63 -2.39 -0.02 1.75 16 27 H 0.05 2.17 5.04 -2.39 -0.01 2.16 16 28 H 0.04 1.86 8.00 -2.39 -0.02 1.84 16 29 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.34 15.77 7.12 -89.70 -0.64 15.13 16 31 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 32 H 0.07 1.95 7.71 -2.39 -0.02 1.94 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.11 1.07 5.41 -2.39 -0.01 1.06 16 37 H 0.06 1.56 7.13 -2.39 -0.02 1.55 16 38 H 0.10 1.45 8.02 -2.38 -0.02 1.43 16 39 H 0.04 1.05 7.59 -2.39 -0.02 1.04 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.03 0.82 6.17 -2.39 -0.01 0.81 16 42 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.78 5.81 -2.39 -0.01 0.77 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 Total: -1.00 -72.84 345.67 2.10 -70.74 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.14 Total: 27.16 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.79 Total: -12.66 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -4.56 Total: -107.64 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.77 Total: 45.39 kcal Total: -72.84 2.10 -70.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.165 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds