Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38263 * 119.99690 * 2 1 4 4 C 1.38220 * 120.01598 * 179.72464 * 3 2 1 5 5 C 1.38236 * 120.01219 * 0.54873 * 4 3 2 6 6 C 1.50704 * 120.00627 * 179.75038 * 5 4 3 7 7 N 1.46497 * 109.46974 * 259.72305 * 6 5 4 8 8 C 1.46498 * 120.00118 * 269.99785 * 7 6 5 9 9 C 1.36943 * 119.99925 * 89.99737 * 7 6 5 10 10 H 1.07997 * 120.00083 * 22.33137 * 9 7 6 11 11 C 1.38809 * 119.99950 * 202.32074 * 9 7 6 12 12 N 1.31623 * 119.99861 * 14.35346 * 11 9 7 13 13 Si 1.86798 * 120.00206 * 194.34543 * 11 9 7 14 14 H 1.48507 * 109.47064 * 90.00544 * 13 11 9 15 15 H 1.48497 * 109.47452 * 210.00266 * 13 11 9 16 16 H 1.48500 * 109.47247 * 330.00786 * 13 11 9 17 17 C 1.38307 * 119.98936 * 359.47151 * 5 4 3 18 18 Br 1.89106 * 120.00774 * 180.27533 * 17 5 4 19 19 C 1.38197 * 119.99035 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47839 * 269.98101 * 1 2 3 21 21 H 1.09000 * 109.47044 * 29.97967 * 1 2 3 22 22 H 1.09003 * 109.47581 * 149.97599 * 1 2 3 23 23 H 1.07996 * 119.98815 * 359.97438 * 3 2 1 24 24 H 1.07999 * 119.99346 * 180.29670 * 4 3 2 25 25 H 1.08997 * 109.47306 * 139.71879 * 6 5 4 26 26 H 1.09007 * 109.46720 * 19.72080 * 6 5 4 27 27 H 1.09002 * 109.47084 * 89.77263 * 8 7 6 28 28 H 1.09005 * 109.47324 * 209.77037 * 8 7 6 29 29 H 1.09003 * 109.46991 * 329.76575 * 8 7 6 30 30 H 0.97004 * 119.99770 * 179.97438 * 12 11 9 31 31 H 1.07997 * 120.00906 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1979 0.0058 5 6 4.2723 0.0012 0.0000 6 6 5.7793 0.0019 0.0006 7 7 6.2682 -0.2375 -1.3594 8 6 6.5133 -1.6067 -1.8194 9 6 6.4962 0.8186 -2.2009 10 1 6.6709 1.8041 -1.7954 11 6 6.5031 0.6222 -3.5750 12 7 6.0197 -0.4917 -4.0830 13 14 7.1981 1.9388 -4.7032 14 1 8.6484 1.6970 -4.9116 15 1 6.4956 1.8916 -6.0107 16 1 7.0029 3.2745 -4.0843 17 6 3.5812 -1.1969 -0.0004 18 35 4.5272 -2.8343 -0.0003 19 6 2.1978 -1.1969 -0.0005 20 1 -0.3635 -0.0003 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6580 2.1326 -0.0004 24 1 4.1200 2.1334 0.0106 25 1 6.1428 -0.7852 0.6612 26 1 6.1420 0.9678 0.3524 27 1 5.6041 -2.0076 -2.2675 28 1 7.3127 -1.6035 -2.5604 29 1 6.8054 -2.2277 -0.9725 30 1 6.0241 -0.6287 -5.0433 31 1 1.6578 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095982647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = 49.105045 kcal Electronic energy + Delta-G solvation = -14942.491526 eV Core-core repulsion = 12463.850298 eV Total energy + Delta-G solvation = -2478.641227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00496 -35.64680 -32.93913 -31.53740 -30.84385 -28.78472 -27.78201 -25.82026 -24.40070 -22.04630 -21.38948 -19.91057 -16.67907 -15.70781 -15.18936 -14.74082 -14.50605 -13.84119 -13.40191 -13.21862 -12.99402 -12.80189 -12.17692 -11.84137 -11.64828 -11.29831 -10.99458 -10.81828 -10.78069 -10.53198 -10.29570 -10.07368 -10.00796 -9.86001 -9.07216 -8.48712 -8.23600 -7.90007 -6.73447 -5.72942 -3.14858 1.67893 1.83182 2.29157 3.38442 3.44446 3.45790 4.11403 4.52203 5.13756 5.22818 5.39006 5.47070 5.55960 5.72022 5.75276 5.81637 5.94066 6.01888 6.16345 6.37442 6.48307 6.62422 6.75120 6.90873 6.96054 7.13555 7.38953 7.47261 7.78781 7.88687 8.39971 9.23496 9.86119 10.36358 11.31725 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.008395 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.110179 B = 3334.520172 C = 4278.579024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.109 4.109 3 C -0.108 4.108 4 C -0.102 4.102 5 C -0.055 4.055 6 C 0.172 3.828 7 N -0.582 5.582 8 C 0.160 3.840 9 C -0.255 4.255 10 H 0.070 0.930 11 C 0.004 3.996 12 N -0.898 5.898 13 Si 0.904 3.096 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.279 1.279 17 C -0.075 4.075 18 Br -0.059 7.059 19 C -0.095 4.095 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.004 0.996 30 H 0.253 0.747 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 -2.395 10.017 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.061 4.061 6 C 0.044 3.956 7 N -0.302 5.302 8 C 0.015 3.985 9 C -0.385 4.385 10 H 0.087 0.913 11 C -0.195 4.195 12 N -0.541 5.541 13 Si 0.734 3.266 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.205 1.205 17 C -0.156 4.156 18 Br 0.027 6.973 19 C -0.115 4.115 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.135 0.865 24 H 0.142 0.858 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.003 -3.097 9.799 12.436 hybrid contribution -0.079 1.053 -0.997 1.452 sum -7.082 -2.044 8.802 11.480 Atomic orbital electron populations 1.20682 0.91434 1.02415 1.01658 1.19655 0.95603 0.92809 1.02974 1.21023 0.94403 0.97087 1.00162 1.20951 0.93572 0.97560 1.00133 1.21132 1.00150 0.90981 0.93883 1.20138 0.86200 0.99946 0.89285 1.44120 1.72383 1.03907 1.09801 1.21103 0.99814 0.83071 0.94502 1.19254 1.41976 0.90033 0.87205 0.91268 1.25050 0.99962 0.97413 0.97103 1.70109 1.46965 1.25825 1.11228 0.86263 0.78742 0.81263 0.80318 1.21417 1.21795 1.20467 1.21528 0.93923 0.91453 1.08650 1.96567 1.76212 1.27006 1.97532 1.20804 0.92121 0.97848 1.00765 0.91747 0.91840 0.91922 0.86484 0.85849 0.92548 0.92632 0.94978 0.93778 0.97739 0.93707 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 36.00 0.36 -0.88 16 2 C -0.11 -1.71 5.88 -104.63 -0.62 -2.33 16 3 C -0.11 -1.76 9.70 -39.58 -0.38 -2.14 16 4 C -0.10 -1.88 9.67 -39.59 -0.38 -2.27 16 5 C -0.06 -1.12 5.47 -104.60 -0.57 -1.69 16 6 C 0.17 3.65 5.39 -5.19 -0.03 3.62 16 7 N -0.58 -14.80 2.91 -182.50 -0.53 -15.33 16 8 C 0.16 4.02 7.19 59.85 0.43 4.45 16 9 C -0.25 -7.01 9.66 -15.06 -0.15 -7.16 16 10 H 0.07 1.85 7.86 -52.49 -0.41 1.43 16 11 C 0.00 0.11 5.03 -17.43 -0.09 0.02 16 12 N -0.90 -26.50 10.78 55.49 0.60 -25.90 16 13 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.08 -1.46 6.22 -39.52 -0.25 -1.70 16 18 Br -0.06 -1.07 27.77 -68.01 -1.89 -2.96 16 19 C -0.10 -1.64 9.44 -39.56 -0.37 -2.01 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 22 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 23 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 24 H 0.12 2.13 8.03 -52.49 -0.42 1.71 16 25 H 0.06 1.12 6.90 -51.93 -0.36 0.76 16 26 H 0.06 1.12 7.89 -51.92 -0.41 0.71 16 27 H 0.03 0.86 6.71 -51.93 -0.35 0.51 16 28 H 0.04 1.21 6.97 -51.93 -0.36 0.84 16 29 H 0.00 0.09 6.55 -51.93 -0.34 -0.25 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 275.67 15.07 4.15 4.15 Total: -1.00 -30.14 275.67 -8.63 -38.77 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -3.90 Total: -3.61 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.04 Total: -12.08 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.07 Total: -41.23 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -1.89 Total: -2.96 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.14 -8.63 -38.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095982647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.875 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds